BAC Information

Click to search

BAC

Clone NameB6Ng01-243N03
Chromosome3 (Build37)
Map Location 89,531,464 - 89,669,911
singlet/doubletdoublet
Overlap geneAdar, Chrnb2, Ube2q1, LOC668087, She
Upstream geneRit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078
Downstream geneIl6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243N03.bB6Ng01-243N03.g
ACCGA053105GA053106
length1,0681,089
definitionB6Ng01-243N03.b B6Ng01-243N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,668,891 - 89,669,911)(89,531,464 - 89,532,550)
sequence
gaattcagagatctgcctgcctctgtaaacatagctgggtgggaccttgt
cctgagagtaccatctcccaccactcttggacctaaatttgctctgaccc
aggctgaccttgaactcaagaatctgcctgcatttgtatctgcctgtctt
tgcgtctctctggcaagccggctcacagtgcagccgcctctgctccttca
catctgtgaagctccttatacaattcatactgcattttatatttttgcat
agctgagaaattatacatttctgaacatgtctttagagttcttgtcctga
agatcccagtgtttagcattttgctgagacattagtcacaccttcctatc
ctggactcacggtgtctctgattatcatgaaatcattaacgttaacaggg
aggacattccttggaggaacatgaaaatatgttcattattatacaaacaa
gccttactcccacagcagccgtcaactctcgtggaggcccacgcctgctg
gccctgttccaggggcaggaaccatgtcgttttgtctctatcaaggccat
gccacagctggtggcaagaagtgtgcaaaggcccccaactcagatgaagc
tggggttgggtggcacccactgcccttcacttggacccctgttcccgaag
cacagctgttcttctccaccccaaggcaggtgctgtttccttagtatgag
ctctggtcccatagctgttggtgaccttgatgcccctttctgcagccgtg
tgctctccaaccctgaaccactctctccagcaaggatccctgtgtcctca
tttggtttgctaaactgaggctggcagccggccaactgggagtctgatcc
cccgggcaaaggcatagcactttcaggggtgactttgaagaggtctgagc
accaggggaggtcacagagaggaaggacagaatcggttccttaaattttt
ctcccctttggtttttctgagatacgtttctctgtgtggccctggctatc
tagacctgctctgtagatcacagctggccttgactcagagatctgtctgc
ctctgctcagagtgctgg
gaattctgtttccaagaaaataaagactagaggagttaggaaaggcagag
cccctgcagggaaggctatggaactatgtagtcagccagcaggggctctg
aaaggccctgtagtgttgctggcccctccccaacccaggttcctcctcaa
tctctgctctaggacagtaagagacagcatcatggtaccattaaattctg
ttaggaagatggaataaaaactactcaattaagaacagggagaaacaggc
agagcacgaagatctcttgagtttgaggccagcttggtctacagagtggg
ttctaggacagcccatgctacacagagaaactgtcttcaaaaaaaaaaaa
aaagaaaccaaaacaacaacaacaaaaaacaaggagaaaaagtaaattcc
atatattggctattttatgaattgtccatctggcaaattggctgttagtg
aaatccacctgttttccaagaaatgctgcagcactcagggcccagtctgt
tgttgctgaccccatacaacacttactccacaagctaaagatggggccat
tgtcttgcaggagctaggactgagcagagctcaggctgggactgggggag
aagaggaaggaaaaacagtggatgagaatcccttaccttgagtcctaact
cagaggggcccagatgtgggccaatagctgagtctctactggccagagcc
accccagcagctgaccaagtactactcacaggactgagcttgcataggac
aaacagcttgagtaccagacaggatttaatacatagagccatagggttta
gagagttattttgtgggctgcccatgaagctaaatgtgcgtgatgtgcac
tcggaatggtctatacaggactgttagctgttgttctgacagttgttttg
gcattgtcgttaatattataactttattatgtaaccactaacctttactg
ggcatacacgtcttttcctttcatttactggaggactctgactcagtaat
aaaaggatgtccctttctctgagacctcttttttggggggtagggggaca
ggctaccgaaacagtctggctttcctagttaatttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89668891_89669911
seq2: B6Ng01-243N03.b_102_1115 (reverse)

seq1  CCAGCACTCTGGAGGCAGAGGCAGACAGATCTCTGAGTTCAAGGCCAGCT  50
      |||||||||||   ||||||||||||||||||||||| ||||||||||||
seq2  CCAGCACTCTG--AGCAGAGGCAGACAGATCTCTGAG-TCAAGGCCAGCT  47

seq1  GTGATCTACAGAGCAGGTTCTAGGATAGCCAGGGCCACACAGAGAAACCG  100
      ||||||||||||||||| |||| |||||||||||||||||||||||| ||
seq2  GTGATCTACAGAGCAGG-TCTA-GATAGCCAGGGCCACACAGAGAAA-CG  94

seq1  TATCTCAGAAAAACCAAAGGGGAGAAAAATTTAAGGAACCGATTTCTGTC  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATCTCAGAAAAACCAAAGGGGAGAAAAATTTAAGGAACCGA-TTCTGTC  143

seq1  CTTCCTCTCTGTGACCTCCCCTGGTGCTCAGACCTCTTCAAAGTCACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTGTGACCTCCCCTGGTGCTCAGACCTCTTCAAAGTCACCCC  193

seq1  TGAAAGTGCTATGCCTTTGCCCGGGGGATCAGACTCCCAGTTGGCCGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCTATGCCTTTGCCCGGGGGATCAGACTCCCAGTTGGCCGGCT  243

seq1  GCCAGCCTCAGTTTAGCAAACCAAATGAGGACACAGGGATCCTTGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCAGTTTAGCAAACCAAATGAGGACACAGGGATCCTTGCTGGA  293

seq1  GAGAGTGGTTCAGGGTTGGAGAGCACACGGCTGCAGAAAGGGGCATCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGTTCAGGGTTGGAGAGCACACGGCTGCAGAAAGGGGCATCAAG  343

seq1  GTCACCAACAGCTATGGGACCAGAGCTCATACTAAGGAAACAGCACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAACAGCTATGGGACCAGAGCTCATACTAAGGAAACAGCACCTGC  393

seq1  CTTGGGGTGGAGAAGAACAGCTGTGCTTCGGGAACAGGGGTCCAAGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTGGAGAAGAACAGCTGTGCTTCGGGAACAGGGGTCCAAGTGAA  443

seq1  GGGCAGTGGGTGCCACCCAACCCCAGCTTCATCTGAGTTGGGGGCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGGTGCCACCCAACCCCAGCTTCATCTGAGTTGGGGGCCTTTG  493

seq1  CACACTTCTTGCCACCAGCTGTGGCATGGCCTTGATAGAGACAAAACGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTTGCCACCAGCTGTGGCATGGCCTTGATAGAGACAAAACGAC  543

seq1  ATGGTTCCTGCCCCTGGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCTGCCCCTGGAACAGGGCCAGCAGGCGTGGGCCTCCACGAGAG  593

seq1  TTGACGGCTGCTGTGGGAGTAAGGCTTGTTTGTATAATAATGAACATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGGCTGCTGTGGGAGTAAGGCTTGTTTGTATAATAATGAACATATT  643

seq1  TTCATGTTCCTCCAAGGAATGTCCTCCCTGTTAACGTTAATGATTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCCTCCAAGGAATGTCCTCCCTGTTAACGTTAATGATTTCATG  693

seq1  ATAATCAGAGACACCGTGAGTCCAGGATAGGAAGGTGTGACTAATGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGAGACACCGTGAGTCCAGGATAGGAAGGTGTGACTAATGTCTC  743

seq1  AGCAAAATGCTAAACACTGGGATCTTCAGGACAAGAACTCTAAAGACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGCTAAACACTGGGATCTTCAGGACAAGAACTCTAAAGACATG  793

seq1  TTCAGAAATGTATAATTTCTCAGCTATGCAAAAATATAAAATGCAGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGTATAATTTCTCAGCTATGCAAAAATATAAAATGCAGTATG  843

seq1  AATTGTATAAGGAGCTTCACAGATGTGAAGGAGCAGAGGCGGCTGCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATAAGGAGCTTCACAGATGTGAAGGAGCAGAGGCGGCTGCACTG  893

seq1  TGAGCCGGCTTGCCAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGGCTTGCCAGAGAGACGCAAAGACAGGCAGATACAAATGCAGGC  943

seq1  AGATTCTTGAGTTCAAGGTCAGCCTGGGTCAGAGCAAATTTAGGTCCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGAGTTCAAGGTCAGCCTGGGTCAGAGCAAATTTAGGTCCAAG  993

seq1  AGTGGTGGGAGATGGTACTCT  1021
      |||||||||||||||||||||
seq2  AGTGGTGGGAGATGGTACTCT  1014

seq1: chr3_89531464_89532550
seq2: B6Ng01-243N03.g_68_1156

seq1  GAATTCTGTTTCCAAGAAAATAAAGACTAGAGGAGTTAGGAAAGGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTCCAAGAAAATAAAGACTAGAGGAGTTAGGAAAGGCAGAG  50

seq1  CCCCTGCAGGGAAGGCTATGGAACTATGTAGTCAGCCAGCAGGGGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGGGAAGGCTATGGAACTATGTAGTCAGCCAGCAGGGGCTCTG  100

seq1  AAAGGCCCTGTAGTGTTGCTGGCCCCTCCCCAACCCAGGTTCCTCCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCTGTAGTGTTGCTGGCCCCTCCCCAACCCAGGTTCCTCCTCAA  150

seq1  TCTCTGCTCTAGGACAGTAAGAGACAGCATCATGGTACCATTAAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCTAGGACAGTAAGAGACAGCATCATGGTACCATTAAATTCTG  200

seq1  TTAGGAAGATGGAATAAAAACTACTCAATTAAGAACAGGGAGAAACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGATGGAATAAAAACTACTCAATTAAGAACAGGGAGAAACAGGC  250

seq1  AGAGCACGAAGATCTCTTGAGTTTGAGGCCAGCTTGGTCTACAGAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACGAAGATCTCTTGAGTTTGAGGCCAGCTTGGTCTACAGAGTGGG  300

seq1  TTCTAGGACAGCCCATGCTACACAGAGAAACTGTCTTCAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACAGCCCATGCTACACAGAGAAACTGTCTTCAAAAAAAAAAAA  350

seq1  AAAGAAACCAAAACAACAACAACAAAAAACAAGGAGAAAAAGTAAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAAAACAACAACAACAAAAAACAAGGAGAAAAAGTAAATTCC  400

seq1  ATATATTGGCTATTTTATGAATTGTCCATCTGGCAAATTGGCTGTTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGGCTATTTTATGAATTGTCCATCTGGCAAATTGGCTGTTAGTG  450

seq1  AAATCCACCTGTTTTCCAAGAAATGCTGCAGCACTCAGGGCCCAGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCTGTTTTCCAAGAAATGCTGCAGCACTCAGGGCCCAGTCTGT  500

seq1  TGTTGCTGACCCCATACAACACTTACTCCACAAGCTAAAGATGGGGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGACCCCATACAACACTTACTCCACAAGCTAAAGATGGGGCCAT  550

seq1  TGTCTTGCAGGAGCTAGGACTGAGCAGAGCTCAGGCTGGGACTGGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCAGGAGCTAGGACTGAGCAGAGCTCAGGCTGGGACTGGGGGAG  600

seq1  AAGAGGAAGGAAAAACAGTGGATGAGAATCCCTTACCTTGAGTCCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGAAAAACAGTGGATGAGAATCCCTTACCTTGAGTCCTAACT  650

seq1  CAGAGGGGCCCAGATGTGGGCCAATAGCTGAGTCTCTACTGGCCAGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGCCCAGATGTGGGCCAATAGCTGAGTCTCTACTGGCCAGAGCC  700

seq1  ACCCCAGCAGCTGACCAAGTACTACTCACAGGACTGAGCTTGCATAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCAGCTGACCAAGTACTACTCACAGGACTGAGCTTGCATAGGAC  750

seq1  AAACAGCTTGAGTACCAGACAGGATTTAATACATAGAGCCATAGGGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTGAGTACCAGACAGGATTTAATACATAGAGCCATAGGGTTTA  800

seq1  GAGAGTTATTTTGTGGGCTGCCCATGAAGCTAAATGTGCGTGATGTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTATTTTGTGGGCTGCCCATGAAGCTAAATGTGCGTGATGTGCAC  850

seq1  TCGGAATGGTCTATACAGGACTGTTAGCTGTTGTTCTGACAGTTGTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAATGGTCTATACAGGACTGTTAGCTGTTGTTCTGACAGTTGTTTTG  900

seq1  GCATTGTCGTTAATATTATAACTTTATTATGTAACCACTAACC-TTACT-  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GCATTGTCGTTAATATTATAACTTTATTATGTAACCACTAACCTTTACTG  950

seq1  GGCATACACGTCTTTTCCTTTCATTTACTGGAGAACTCTGACTCAGTAAT  998
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCATACACGTCTTTTCCTTTCATTTACTGGAGGACTCTGACTCAGTAAT  1000

seq1  AAAAGGATGTCCCTTCTTCTGGAGACCTCTTTTTTGGGGGGAAGGGGGAC  1048
      |||||||||||||||  ||| |||||||||||||||||||| ||||||||
seq2  AAAAGGATGTCCCTTTCTCT-GAGACCTCTTTTTTGGGGGGTAGGGGGAC  1049

seq1  A-GCTACCCAAAACAGTTCTTGCTTT-CTAG-TAATTTCAAA  1087
      | |||| || |||||| ||| ||||| |||| ||||||||||
seq2  AGGCTA-CCGAAACAG-TCTGGCTTTCCTAGTTAATTTCAAA  1089