BAC Information

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BAC

Clone NameB6Ng01-243O19
Chromosome3 (Build37)
Map Location 41,480,800 - 41,481,920
singlet/doubletsinglet
Overlap geneSclt1
Upstream geneIntu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243O19.bB6Ng01-243O19.g
ACCGA053184GA053185
length1,1111,203
definitionB6Ng01-243O19.b B6Ng01-243O19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaactgcttagtctcaggactttgcagagttatgagtctctgc
agtaatcgccaccttctggaataggcagcttttctgaccaaggctgagag
cagcttaaatctgttggtatgttcagtcttagaggatttctgtgcataac
agattataatcatagatttgattttcagatataaatacaatgtgaattca
tagactgtgagtatttactcgtttataggttattaatgacaattttcaag
ctcttcaatgcaacactgaagacctggatagaacaacaatattctagatt
aaatgtttgaagtaagatagcaatttaagacaaagctatagaatatattt
aaaaaggtatctcagatcctcaaacataataaagttatttctaaaaaaaa
aaatgaaggaaaattagctatattttctcaagaactttttcccttgtgta
actacttttttattcaacttcattgttcttttattttctgctttaaaatg
gaaaggaaatttgattctgaaactaagaatggttatgcagccttggggaa
aggtaaaggcagtaaaaacttccttcatatatgaaaaagatggcttactg
tttccaaaattattcaatatgtgctttagattctctaccttatgttttta
ttagctgaagttactttttagacagggtctgttatgcatccaagcctggc
cttgaactcatgagctctggtttctcactgtctcctgtacacctcttccc
aaaagggatgcgcgtctggtttcctgaagcagcatctcttttcctctacc
aaccaacaatcccagggtatcatcagacagcacctgaagcttagggcagt
cacttccccacctgcctgaggcgctcatcgacacagtcacaaaaggccat
catttatcatttgagaagtgtatataactatttctgggtttggaagatat
tacctggagtaactggtcactcatgtataattcagaattgactcattcta
ctcctctgatatgagagcttgatttactgtctcacatagctatgaacctt
ttgaatatccccattagacccactctcctcgtatctactgtgtgaactgc
ttcttattttt
gaattccatcacctgttggtcgtgttttcctgcaattctttaagagattt
atgtgcttcctctttaaggtcttccacctatttagcagggttctcctgta
tttctttaagtgagttattaaagtccttcttgatgtcctctatcatcatc
atgagatgtgcttttaaatctaggtctagcttttcgggtgtgttggggtg
ccctggactgggcaaggtgggagtgctgggttctgatgatggtgagtggt
cttgttttctgttattaagattattacgtttaccttttgccatcttaaac
tctggagttagttgttatagttgtctcaggtttgagattgttcctctcgt
gattctattacactctatcagcagacctgggagaccagctctctcctctg
agtttcagtggtcagagctctctcttcaggcaagctctcctctcacaggg
aaggtgcctagatatctggcattcgggcctgcctcctggccgaagatgta
ggcccaaaacaggacctttcccagaagctgtgttgcttcggcctgtcaca
gaagctgttagcttctgtagtccacactctcacctgtgcacactactctc
agcagagtcccagaaccaagatcccctgtcttgtttttaaaagtcaattt
tttaaagtgtgatgagcacattcaactatttcttgtcccatggggttata
aggaattctagttttatgtttgataacaaattctttacaaaatgaagtaa
aaattttgctagaataggatggcccattatctgtcttaatacatttaggc
aatcccatggcattaaaggcttgtaggcaatgatcaattatattttagga
ggcttttacagtattcagagaagcaaaaagaaatcttgaacaagtattca
atacaaacatgtatatattttaatttttctaaattacgtaataatgagtt
aatatccattttgcccaaattatgatttaggcataagacctccttgaatt
aacctccttaaatgtggcactgggagaagaatgtaatacattttaggaca
ttgtttacatcatttttgcctgcttcttagtgatcttgtgtgagcttaag
gtattgcctagaagattaatttttcatgaatcacattggccaaagcaacg
gaatctgaagtaagacttttttcctatattaaagagctctctgtctctga
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41480800_41481920
seq2: B6Ng01-243O19.b_43_1153

seq1  GAATTCCCAACTGCTTAGTCTCAGGACTTTGCAGAGTTATGAGTCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACTGCTTAGTCTCAGGACTTTGCAGAGTTATGAGTCTCTGC  50

seq1  AGTAATCGCCACCTTCTGGAATAGGCAGCTTTTCTGACCAAGGCTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCGCCACCTTCTGGAATAGGCAGCTTTTCTGACCAAGGCTGAGAG  100

seq1  CAGCTTAAATCTGTTGGTATGTTCAGTCTTAGAGGATTTCTGTGCATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAATCTGTTGGTATGTTCAGTCTTAGAGGATTTCTGTGCATAAC  150

seq1  AGATTATAATCATAGATTTGATTTTCAGATATAAATACAATGTGAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAATCATAGATTTGATTTTCAGATATAAATACAATGTGAATTCA  200

seq1  TAGACTGTGAGTATTTACTCGTTTATAGGTTATTAATGACAATTTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGAGTATTTACTCGTTTATAGGTTATTAATGACAATTTTCAAG  250

seq1  CTCTTCAATGCAACACTGAAGACCTGGATAGAACAACAATATTCTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAATGCAACACTGAAGACCTGGATAGAACAACAATATTCTAGATT  300

seq1  AAATGTTTGAAGTAAGATAGCAATTTAAGACAAAGCTATAGAATATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGAAGTAAGATAGCAATTTAAGACAAAGCTATAGAATATATTT  350

seq1  AAAAAGGTATCTCAGATCCTCAAACATAATAAAGTTATTTCTAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTATCTCAGATCCTCAAACATAATAAAGTTATTTCTAAAAAAAA  400

seq1  AAATGAAGGAAAATTAGCTATATTTTCTCAAGAACTTTTTCCCTTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGAAAATTAGCTATATTTTCTCAAGAACTTTTTCCCTTGTGTA  450

seq1  ACTACTTTTTTATTCAACTTCATTGTTCTTTTATTTTCTGCTTTAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTTTATTCAACTTCATTGTTCTTTTATTTTCTGCTTTAAAATG  500

seq1  GAAAGGAAATTTGATTCTGAAACTAAGAATGGTTATGCAGCCTTGGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAATTTGATTCTGAAACTAAGAATGGTTATGCAGCCTTGGGGAA  550

seq1  AGGTAAAGGCAGTAAAAACTTCCTTCATATATGAAAAAGATGGCTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGGCAGTAAAAACTTCCTTCATATATGAAAAAGATGGCTTACTG  600

seq1  TTTCCAAAATTATTCAATATGTGCTTTAGATTCTCTACCTTATGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAATTATTCAATATGTGCTTTAGATTCTCTACCTTATGTTTTTA  650

seq1  TTAGCTGAAGTTACTTTTTAGACAGGGTCTGTTATGCATCCAAGCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAAGTTACTTTTTAGACAGGGTCTGTTATGCATCCAAGCCTGGC  700

seq1  CTTGAACTCATGAGCTCTGGTTTCTCACTGTCTCCTGTACACCTCTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCATGAGCTCTGGTTTCTCACTGTCTCCTGTACACCTCTTCCC  750

seq1  AAAAGGGATGCGCGTCTGGTTTCCTGAAGCAGCATCTCTTTTCCTCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATGCGCGTCTGGTTTCCTGAAGCAGCATCTCTTTTCCTCTACC  800

seq1  AACCAACAATCCCAGGGTATCATCAGACAGCACCTGAAGCTTAGGGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAATCCCAGGGTATCATCAGACAGCACCTGAAGCTTAGGGCAGT  850

seq1  CACTTCCCCACCTGCCTGAGGCGCTCATCGACACAGTCACAAAAGGCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCCACCTGCCTGAGGCGCTCATCGACACAGTCACAAAAGGCCAT  900

seq1  CATTTATCATTTGAGAAGTGTATATAACTATTTCT-GGTTTGGAAGATAT  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTTATCATTTGAGAAGTGTATATAACTATTTCTGGGTTTGGAAGATAT  950

seq1  TACCTGGAGTAACTGGCCACTCATGTATAATTCAGAATTGACTCATTCTT  999
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  TACCTGGAGTAACTGGTCACTCATGTATAATTCAGAATTGACTCATTC-T  999

seq1  ACTCCTCTTGATATGAGAGCTTTGATTTACTGTCTTCACATAGGCTATGA  1049
      ||||||| |||||||||||| ||||||||||||| ||||||| |||||||
seq2  ACTCCTC-TGATATGAGAGC-TTGATTTACTGTC-TCACATA-GCTATGA  1045

seq1  ACCTTTTTGATATCCCCAATAAGACCCACTCTTCCTTCGTTATCTACCTG  1099
      |||||||  |||||||| || |||||||||||  | ||| |||||| |||
seq2  ACCTTTTGAATATCCCC-ATTAGACCCACTCT--CCTCG-TATCTA-CTG  1090

seq1  TGTGAAACTGCTTCCTATTTTT  1121
      |||| ||||||||| |||||||
seq2  TGTG-AACTGCTTCTTATTTTT  1111