BAC Information

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BAC

Clone NameB6Ng01-244F10
Chromosome3 (Build37)
Map Location 81,132,974 - 81,269,866
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F10.bB6Ng01-244F10.g
ACCGA053498GA053499
length1,134764
definitionB6Ng01-244F10.b B6Ng01-244F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,268,732 - 81,269,866)(81,132,974 - 81,133,724)
sequence
gaattctgactcagtgtcggagctctggatgatctggaacagctgcccag
attccatgtaattctaatgtcaggtaaaaatagaggctgacattcacaga
attgtctttgtgttgtttgaactgtaatttttgccaagtattccaaaaca
acacaggccagccacattaggcttgcctgctatcccagcacttgcgagct
agaggcaggaggtcaggagttcaagcacctcctcctctagaaagtgtttt
caaggccagcctatcgtacatgcgttctggtctcaaaacagaacaagtag
agcgacaactgtgaaattgatgcatttccattacttggtcatgtgctaaa
gaagtgtctgcactttcaaatcactttgacatcaatcattttggcatcaa
aaatgaaagtaaggatacattgttatatatgcttgctgtcttgattttca
aagtaccacgcttctcaactgtactttgtattatagaagctgaggcttgg
aagggttagtttcattttgtttcagtaatagtgttagtcaagcacatata
ttttaatttctcctaacaagaaaagtcaaccacctccgaattcaaacaat
ttatcattgattttgacatttatacccatagatgaaagtacatagtagat
ttattcatagcataaatgtttattaaaaacccagttctgtgatagataat
gacagaaatgggagacataagatttctctttaaaaagagggtttcaaatt
cccactgcaccgaggaaagcatggcgtgtatgtgtgattgcgtgcatgca
cagcattagagaatgattgagctcaaatgacttcatcttcaatcattttt
catgaacataagtctttcacaatatttgttcctttcaagtgagttaagaa
cttcctgaaaactgtttttccataatatattctcctttcccctaaaattc
taggggaaataacactttagaataatccaagttgactcatatgtatagta
cctctatgatacaaacattactgtgattaaagcagccttgcaacttaata
ggcatttccatgaatgaccccggcagaagagctagttacctcaattacgt
aactggaccagtaatgatattttccacaagagtt
gaattcattacctttacaaacccaaacaggttttgagtgtatttaaggta
actctaattttttctaaatactgtaataataaatgaaaaactttagcagg
ggtttaagagtgatggctgaggaggtgtgaggaaaactgtacaccggcat
cttgttgttgattattgacttatttgaatagtgacgagggtctacattta
ctgagaatgagttcgcttataatttcacttatgacttcggttaggatttt
tcaggttactactaggagtaacctaatttttacgctactgtttatggatc
ataattctatgtttaattatttgctgctgtatttctcaatgcttatgaaa
aagatatttttacccaaaacagctagaaaaatgctggctctgttgcaaat
ggtattataagaaagctgggaagggtcaaatggggaggatattttggaac
acacattcttgttagagactctcttgctagaggtcatcaaaactggggac
actgaaaaaactagggttgaatccagaggctcccactgaacagggtcaca
agaaagacaggagagtcaaagaggatgagatatatgtcaatcagactagt
tccaagaagagttctggagaattctcatgtgcatttcttttctctttcta
cttctccttctctctccccctctcgctttctccctccctcttgccctctc
tctctccctcctcctctctctctctctctctctctctctctctctaaccc
tctctaagagggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81268732_81269866
seq2: B6Ng01-244F10.b_45_1178 (reverse)

seq1  AACTCTTGTGGAAAATATCATTACTTGTCCAATAAGGAAACTGAGTAAAT  50
      ||||||||||||||||||||||||| ||||| | | | || ||||  || 
seq2  AACTCTTGTGGAAAATATCATTACTGGTCCAGTTACGTAATTGAGGTAAC  50

seq1  TAACTC-TCT--CCGGGTTATTCATTGAAATGCCTATTAAGTTGCAAAGG  97
      || ||| |||  | |||| |||||| ||||||||||||||||||| ||||
seq2  TAGCTCTTCTGCCGGGGTCATTCATGGAAATGCCTATTAAGTTGC-AAGG  99

seq1  CTGCTTTTAAATCACAGTTAATGTTTGTATCATAGAAGGTACTATACATA  147
      |||||||  |||||||| ||||||||||||||||| ||||||||||||||
seq2  CTGCTTT--AATCACAG-TAATGTTTGTATCATAG-AGGTACTATACATA  145

seq1  TGAGTCAACTTGGATTATTCTAAAGTGTTATTTCCCCTAGAATTTTTAGG  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGTCAACTTGGATTATTCTAAAGTGTTATTTCCCCTAGAA-TTTTAGG  194

seq1  GGAAAGGAGAATATATTATGGAAAAACAGTTTTCA-GAAGTTCTTAACTC  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAAAGGAGAATATATTATGGAAAAACAGTTTTCAGGAAGTTCTTAACTC  244

seq1  ACTTGAAAGGAACAAATATTGTG-AAGACTTATGTTCATGAAAAATGATT  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTTGAAAGGAACAAATATTGTGAAAGACTTATGTTCATGAAAAATGATT  294

seq1  GAAGATGAAGTCATTTGAGCTCAATCATTCTCTAATGCTGTGCATGCACG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAAGTCATTTGAGCTCAATCATTCTCTAATGCTGTGCATGCACG  344

seq1  CAATCACACATACACGCCATGCTTTCCTCGGTGCAGTGGGAATTTGAAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACATACACGCCATGCTTTCCTCGGTGCAGTGGGAATTTGAAAC  394

seq1  CCTCTTTTTAAAGAGAAATCTTATGTCTCCCATTTCTGTCATTATCTATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTAAAGAGAAATCTTATGTCTCCCATTTCTGTCATTATCTATC  444

seq1  ACAGAACTGGGTTTTTAATAAACATTTATGCTATGAATAAATCTACTATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTGGGTTTTTAATAAACATTTATGCTATGAATAAATCTACTATG  494

seq1  TACTTTCATCTATGGGTATAAATGTCAAAATCAATGATAAATTGTTTGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCATCTATGGGTATAAATGTCAAAATCAATGATAAATTGTTTGAA  544

seq1  TTTGGAGGTGGTTGACTTTTCTTGTTAGGAGAAATTAAAATATATGTGCT  595
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGTGGTTGACTTTTCTTGTTAGGAGAAATTAAAATATATGTGCT  594

seq1  TGACTAACACTATTACTGAAACAAAATGAAACTAACCCTTCCAAGCCTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACACTATTACTGAAACAAAATGAAACTAACCCTTCCAAGCCTCA  644

seq1  GCTTCTATAATACAAAGTACAGTTGAGAAGCGTGGTACTTTGAAAATCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATAATACAAAGTACAGTTGAGAAGCGTGGTACTTTGAAAATCAA  694

seq1  GACAGCAAGCATATATAACAATGTATCCTTACTTTCATTTTTGATGCCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGCATATATAACAATGTATCCTTACTTTCATTTTTGATGCCAA  744

seq1  AATGATTGATGTCAAAGTGATTTGAAAGTGCAGACACTTCTTTAGCACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGATGTCAAAGTGATTTGAAAGTGCAGACACTTCTTTAGCACAT  794

seq1  GACCAAGTAATGGAAATGCATCAATTTCACAGTTGTCGCTCTACTTGTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAATGGAAATGCATCAATTTCACAGTTGTCGCTCTACTTGTTC  844

seq1  TGTTTTGAGACCAGAACGCATGTACGATAGGCTGGCCTTGAAAACACTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGACCAGAACGCATGTACGATAGGCTGGCCTTGAAAACACTTT  894

seq1  CTAGAGGAGGAGGTGCTTGAACTCCTGACCTCCTGCCTCTAGCTCGCAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAGGAGGTGCTTGAACTCCTGACCTCCTGCCTCTAGCTCGCAAG  944

seq1  TGCTGGGATAGCAGGCAAGCCTAATGTGGCTGGCCTGTGTTGTTTTGGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATAGCAGGCAAGCCTAATGTGGCTGGCCTGTGTTGTTTTGGAA  994

seq1  TACTTGGCAAAAATTACAGTTCAAACAACACAAAGACAATTCTGTGAATG  1045
      ||||||||                 |||||||||||||||||||||||||
seq2  TACTTGGCNNNNNNNNNNNNNNNNNCAACACAAAGACAATTCTGTGAATG  1044

seq1  TCAGCCTCTATTTTTACCTGACATTAGAATTACATGGAATCTGGGCAGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTATTTTTACCTGACATTAGAATTACATGGAATCTGGGCAGCT  1094

seq1  GTTCCAGATCATCCAGAGCTCCGACACTGAGTCAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGATCATCCAGAGCTCCGACACTGAGTCAGAATTC  1134

seq1: chr3_81132974_81133724
seq2: B6Ng01-244F10.g_62_816

seq1  GAATTCATTACCTTTACAAACCCAAACAGGTTTTGAGTGTATTTAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTTTACAAACCCAAACAGGTTTTGAGTGTATTTAAGGTA  50

seq1  ACTCTAATTTTTTCTAAATACTGTAATAATAAATGAAAAACTTTAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTTTTTCTAAATACTGTAATAATAAATGAAAAACTTTAGCAGG  100

seq1  GGTTTAAGAGTGATGGCTGAGGAGGTGTGAGGAAAACTGTACACCGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAGAGTGATGGCTGAGGAGGTGTGAGGAAAACTGTACACCGGCAT  150

seq1  CTTGTTGTTGATTATTGACTTATTTGAATAGTGACGAGGGTCTACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTGATTATTGACTTATTTGAATAGTGACGAGGGTCTACATTTA  200

seq1  CTGAGAATGAGTTCGCTTATAATTTCACTTATGACTTCGGTTAGGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGAGTTCGCTTATAATTTCACTTATGACTTCGGTTAGGATTTT  250

seq1  TCAGGTTACTACTAGGAGTAACCTAATTTTTACGCTACTGTTTATGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTACTACTAGGAGTAACCTAATTTTTACGCTACTGTTTATGGATC  300

seq1  ATAATTCTATGTTTAATTATTTGCTGCTGTATTTCTCAATGCTTATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTATGTTTAATTATTTGCTGCTGTATTTCTCAATGCTTATGAAA  350

seq1  AAGATATTTTTACCCAAAACAGCTAGAAAAATGCTGGCTCTGTTGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTTACCCAAAACAGCTAGAAAAATGCTGGCTCTGTTGCAAAT  400

seq1  GGTATTATAAGAAAGCTGGGAAGGGTCAAATGGGGAGGATATTTTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATAAGAAAGCTGGGAAGGGTCAAATGGGGAGGATATTTTGGAAC  450

seq1  ACACATTCTTGTTAGAGACTCTCTTGCTAGAGGTCATC-AAACTGGGGAC  499
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACACATTCTTGTTAGAGACTCTCTTGCTAGAGGTCATCAAAACTGGGGAC  500

seq1  ACTGAAAAAACTAGGGTTGAATCCAGAGGCTCCCACTGAACAGGGTCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAACTAGGGTTGAATCCAGAGGCTCCCACTGAACAGGGTCACA  550

seq1  AGAAAGACAGGAGAGTCAAAGAGGATGAGATATATGTCAATCAGACTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGGAGAGTCAAAGAGGATGAGATATATGTCAATCAGACTAGT  600

seq1  TCCAAGAAGAGTTCTGGAGAATTCTCATGTGCATTTCTTTTCTCTTTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGAGTTCTGGAGAATTCTCATGTGCATTTCTTTTCTCTTTCTA  650

seq1  CTTCTCCTTCTCTCTCCCCCTCTCGCTTTCTCCCTCCCTCTTGCCCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTCTCTCTCCCCCTCTCGCTTTCTCCCTCCCTCTTGCCCTCTC  700

seq1  TCTCTCCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT---CC  746
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  TCTCTCCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACCC  750

seq1  TCTCT  751
      |||||
seq2  TCTCT  755