BAC Information

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BAC

Clone NameB6Ng01-245D03
Chromosome3 (Build37)
Map Location 35,359,241 - 35,360,121
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245D03.bB6Ng01-245D03.g
ACCGA054142GA054143
length9431,002
definitionB6Ng01-245D03.b B6Ng01-245D03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggctgatttccagagtggttgtaccagtttgcaattccacca
gcaatggaggagtgttcctctttctccacatcctcaccagcatgtggaat
cagagaggaaagggagattgcagccagtgttctgctacagagttgggaat
aactggatctggaggagcaaaggggaagtaaagatcagcagtcagcctgc
ctgcctctcaggcaggagctgcccttgggttggcaagtgatgcctgctgg
gtaacgggacaggacaaaaacaagttggaagagggaggttaaaatgggaa
gatctgtgggatcaacaggagatggggataggggtgggcagggaagggta
ccacaggtgttctgctgcagagctgggaaagagactagggagctggaact
ggaggacagagcaagaggtgaagatctgaatctagtctgcctggttccca
agcaggcttggccagtggtttgcaatggggtgctcaagttacaagacagt
tctgagctgccccatatgagtactgggaactgacctcaggtatttcactg
cttttaaattgtcaagaaattttaaagagtgattttccctagaaatgttg
gctgtccctctgtagcagttagttggatgcttttctcaatgactgggttg
gttgtagagtacaagtgcagtgctgtctgccattttatggccaaatgctt
tcagcattattattactgataaaactggctttgtacagttggctagggtt
tcttgctaatttttctttatggtaaaaatgttcttttctcattttcttct
gtgctatgtgctgggggaagttcctttcacatagagtttgagaatagaga
tttttgttcttttttcctctaagggggtagtagctattggaatttatgga
attctatgggactagctccctttcctggaaaaaagagatattc
gaattccttgattcacacaacttacacatctctcttggcagccggaggag
agagtggagtcacccaggagctgtaacacaaggctcagtaacttagttct
ggcagaaacgtcagaaaatctcagtgtaagcatgtatcatgactttgtgg
gtattagtttgggaaactggctgtgttcctggaaatttggtgcagaagta
gcaatagacaatctgagcccccaaaacgcagggaaaacatcaaccagaga
tctgaaaggagcgttgacaaaaaggagccagaaggcccatggcttgaaga
ggagaaaccaggagacaggttgagaagtctaagggctaggcaggtgggca
ggcatccttaataactagggtctagaaatgcttatgttgtgtagctgttt
cctccaagattgaaacattctagcttctagggaaggttagtaaaacaaaa
ggtaaatgactcaaaataacttcaggaagtccctgaaactcaccagaatg
tctaggcctctccaccccagaacaagttataaggactaccaagagtcact
atcacagacaagctgagctgcaaagaaaaccctcagactgccagaccagc
tgcctggaagaaacagatacttcttgtactggctagttttgagtcaactt
gacacagctggagttatcacagagaaaggagcttcagtagaggaagtgcc
tccatgagatccagctgtggggcattttctcaattagtgatcaaggagga
agggccccttgtgggtgggaccatccctgggctggtagtctttgggttct
ataaaagagcaggctgagcaagccaggggaagcaagccagtaaagaacat
ccctccatggcctatgcatcagctcctacttcctgaactgcttgagttcc
attcctgacttcctttggtgatgaacagcaatgtggaagtgtaagctgaa
tcaccctttcctttcccaacttgcttcttggtcatgatgtttgtacagga
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35359241_35360121
seq2: B6Ng01-245D03.g_67_947

seq1  GAATTCCTTGATTCACACAACTTACACATCTCTCTTGGCAGCCGGAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATTCACACAACTTACACATCTCTCTTGGCAGCCGGAGGAG  50

seq1  AGAGTGGAGTCACCCAGGAGCTGTAACACAAGGCTCAGTAACTTAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGTCACCCAGGAGCTGTAACACAAGGCTCAGTAACTTAGTTCT  100

seq1  GGCAGAAACGTCAGAAAATCTCAGTGTAAGCATGTATCATGACTTTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACGTCAGAAAATCTCAGTGTAAGCATGTATCATGACTTTGTGG  150

seq1  GTATTAGTTTGGGAAACTGGCTGTGTTCCTGGAAATTTGGTGCAGAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTTTGGGAAACTGGCTGTGTTCCTGGAAATTTGGTGCAGAAGTA  200

seq1  GCAATAGACAATCTGAGCCCCCAAAACGCAGGGAAAACATCAACCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGACAATCTGAGCCCCCAAAACGCAGGGAAAACATCAACCAGAGA  250

seq1  TCTGAAAGGAGCGTTGACAAAAAGGAGCCAGAAGGCCCATGGCTTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGAGCGTTGACAAAAAGGAGCCAGAAGGCCCATGGCTTGAAGA  300

seq1  GGAGAAACCAGGAGACAGGTTGAGAAGTCTAAGGGCTAGGCAGGTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCAGGAGACAGGTTGAGAAGTCTAAGGGCTAGGCAGGTGGGCA  350

seq1  GGCATCCTTAATAACTAGGGTCTAGAAATGCTTATGTTGTGTAGCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTTAATAACTAGGGTCTAGAAATGCTTATGTTGTGTAGCTGTTT  400

seq1  CCTCCAAGATTGAAACATTCTAGCTTCTAGGGAAGGTTAGTAAAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGATTGAAACATTCTAGCTTCTAGGGAAGGTTAGTAAAACAAAA  450

seq1  GGTAAATGACTCAAAATAACTTCAGGAAGTCCCTGAAACTCACCAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGACTCAAAATAACTTCAGGAAGTCCCTGAAACTCACCAGAATG  500

seq1  TCTAGGCCTCTCCACCCCAGAACAAGTTATAAGGACTACCAAGAGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCTCTCCACCCCAGAACAAGTTATAAGGACTACCAAGAGTCACT  550

seq1  ATCACAGACAAGCTGAGCTGCAAAGAAAACCCTCAGACTGCCAGACCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACAAGCTGAGCTGCAAAGAAAACCCTCAGACTGCCAGACCAGC  600

seq1  TGCCTGGAAGAAACAGATACTTCTTGTACTGGCTAGTTTTGAGTCAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAGAAACAGATACTTCTTGTACTGGCTAGTTTTGAGTCAACTT  650

seq1  GACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTAGAGGAAGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTAGAGGAAGTGCC  700

seq1  TCCATGAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGA  750

seq1  AGGGCCCCTTGTGGGTGGGACCATCCCTGGGCTGGTAGTCTTTGGGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCTTGTGGGTGGGACCATCCCTGGGCTGGTAGTCTTTGGGTTCT  800

seq1  ATAAAAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACAT  850

seq1  CCCTCCATGGCCTATGCATCAGCTCCTACTT  881
      |||||||||||||||||||||||||||||||
seq2  CCCTCCATGGCCTATGCATCAGCTCCTACTT  881