BAC Information

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BAC

Clone NameB6Ng01-246D24
Chromosome3 (Build37)
Map Location 118,732,466 - 118,892,322
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246D24.bB6Ng01-246D24.g
ACCGA054915GA054916
length9201,152
definitionB6Ng01-246D24.b B6Ng01-246D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,732,466 - 118,733,385)(118,891,148 - 118,892,322)
sequence
gaattcagaaatgaaagggaagtcagctagcgaacacatgagatgtattc
ataataaaccccgtgaacatttcaatcaacttaaaatcccttctcaatga
cactgtgaccatgaaaaccggttagaggatctatgaatgctgctactttg
gggaaataaattcttaataagaaggtgaacactgtggaatcaatttcttt
agtaagatctacccctccatatctaaaaaccacagaatgagtaacaagag
agctcaggggattaaggtggtgttggctgccacgtctggccacctgagtt
caatcctcagaacccatgtcgtgaaaggtgagaaccaactcccacaagtg
atcctctgcacttcttatataccttgcaacacgcacatttgcacgcaagc
atttacaaattacagaattcactttatttttgaaaactacaatggtcaat
actactcaaatacttatgtactactattagagcatagattattttactga
gtattaactcttgatatttttatatcaagatatattgatattctatattt
tagaatactcacttgcaaaggaaaaactattttctttaatataataatgg
acattgtaactacacttcagagtgagctccaagtctagcagttgatgagt
aaaacaaaatgaactcaatgttgtttttgtagattttttgtctcctatgg
cttttaagcagcattttctattttattagtgtttttcatgtgtattatgg
tttctaatttagtgtttttgtaggctttgcatatatgttatattgtgaag
gtttttttttttgttgtctgttttaagttttgctttgtttggtattggtt
tttgcctgtttgttttctaacgagagaaagaaaggatggctttggattgg
cagggatgaggggaggagct

gaattcactgaaaaatgttaccagttataaaatgttttccactaagaaac
tcctaagtcttaattcacatgacatgacaagagctagatagcatttttat
tatgtctccttctctgatggagagaactggggccccaaagatcaatctga
gtgcttatttcatcgtcttaattttctttcccattatcatgttctaaacc
atcatctcctttagcaaaattgctccctaaagtgaaattcagcaatcact
tgtaagccagaactataaaaggatccagcttcatttatacctatgagagc
agatgtaagtgtaaggtaataggaaaagagacaaatttatctttctctgt
caataaactagggcagagttcactgtttgaggtaaagggaccagcgaatg
caaagactgtgtgtcggcatggagacagtttgaatgaatttatgtcttat
catgtgtatttcctgaattgtctttcttacttaagcattatcatagtggt
acagatattcttatgaactacatcttcgtagtttcttattaaagtaatca
tatgcttagcaactttccaaaaattccattcaattttacattcaacaggt
agaatgacttcatcccaaacatttacatgaatgatgctagaaattgtttc
aaaattgttccacattggagaggaacctaatattggtccatttatatgtg
actaaataaatgtgtagtgaatataatctaataagggtcatcacagacaa
aaaggaacaaaccagggaatcatgtcacaatttagcatcaattaaaaaat
atatagtgagtgaaggaagtgaaggagagtccatgctacacgtgagtcca
tttacatggaattctacaaaagaaaaattatatcagtgggaagcagagca
ttgaatattgagctcaagacaaattccaggggaagaataactggggagtg
gaatagagcaatgttgagagtgtagaaacattctggggagtgatgtaaca
aagtgccaaatatattcagctctatgggttatgtgtcattgaatatactg
gtgtgccatatgtcatctaaacttatagtaggtacgggttgaatatgagg
agggccttctgcatgagatcatcctctagccatattgtctgactacatct
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118732466_118733385
seq2: B6Ng01-246D24.b_46_965

seq1  GAATTCAGAAATGAAAGGGAAGTCAGCTAGCGAACACATGAGATGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATGAAAGGGAAGTCAGCTAGCGAACACATGAGATGTATTC  50

seq1  ATAATAAACCCCGTGAACATTTCAATCAACTTAAAATCCCTTCTCAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACCCCGTGAACATTTCAATCAACTTAAAATCCCTTCTCAATGA  100

seq1  CACTGTGACCATGAAAACCGGTTAGAGGATCTATGAATGCTGCTACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGACCATGAAAACCGGTTAGAGGATCTATGAATGCTGCTACTTTG  150

seq1  GGGAAATAAATTCTTAATAAGAAGGTGAACACTGTGGAATCAATTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAAATTCTTAATAAGAAGGTGAACACTGTGGAATCAATTTCTTT  200

seq1  AGTAAGATCTACCCCTCCATATCTAAAAACCACAGAATGAGTAACAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATCTACCCCTCCATATCTAAAAACCACAGAATGAGTAACAAGAG  250

seq1  AGCTCAGGGGATTAAGGTGGTGTTGGCTGCCACGTCTGGCCACCTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGATTAAGGTGGTGTTGGCTGCCACGTCTGGCCACCTGAGTT  300

seq1  CAATCCTCAGAACCCATGTCGTGAAAGGTGAGAACCAACTCCCACAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAGAACCCATGTCGTGAAAGGTGAGAACCAACTCCCACAAGTG  350

seq1  ATCCTCTGCACTTCTTATATACCTTGCAACACGCACATTTGCACGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGCACTTCTTATATACCTTGCAACACGCACATTTGCACGCAAGC  400

seq1  ATTTACAAATTACAGAATTCACTTTATTTTTGAAAACTACAATGGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAATTACAGAATTCACTTTATTTTTGAAAACTACAATGGTCAAT  450

seq1  ACTACTCAAATACTTATGTACTACTATTAGAGCATAGATTATTTTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAAATACTTATGTACTACTATTAGAGCATAGATTATTTTACTGA  500

seq1  GTATTAACTCTTGATATTTTTATATCAAGATATATTGATATTCTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACTCTTGATATTTTTATATCAAGATATATTGATATTCTATATTT  550

seq1  TAGAATACTCACTTGCAAAGGAAAAACTATTTTCTTTAATATAATAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACTCACTTGCAAAGGAAAAACTATTTTCTTTAATATAATAATGG  600

seq1  ACATTGTAACTACACTTCAGAGTGAGCTCCAAGTCTAGCAGTTGATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAACTACACTTCAGAGTGAGCTCCAAGTCTAGCAGTTGATGAGT  650

seq1  AAAACAAAATGAACTCAATGTTGTTTTTGTAGATTTTTTGTCTCCTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATGAACTCAATGTTGTTTTTGTAGATTTTTTGTCTCCTATGG  700

seq1  CTTTTAAGCAGCATTTTCTATTTTATTAGTGTTTTTCATGTGTATTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGCAGCATTTTCTATTTTATTAGTGTTTTTCATGTGTATTATGG  750

seq1  TTTCTAATTTAGTGTTTTTGTAGGCTTTGCATATATGTTATATTGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTTAGTGTTTTTGTAGGCTTTGCATATATGTTATATTGTGAAG  800

seq1  GTTTTTTTTTTTGTTGTCTGTTTTAAGTTTTGCTTTGTTTGGTATTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTGTTGTCTGTTTTAAGTTTTGCTTTGTTTGGTATTGGTT  850

seq1  TTTGCCTGTTTGTTTTCTAACGAGAGAAAGAAAGGATGGCTTTGGATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTTTGTTTTCTAACGAGAGAAAGAAAGGATGGCTTTGGATTGG  900

seq1  CAGGGATGAGGGGAGGAGCT  920
      ||||||||||||||||||||
seq2  CAGGGATGAGGGGAGGAGCT  920


seq1: chr3_118891148_118892322
seq2: B6Ng01-246D24.g_66_1217 (reverse)

seq1  TGAGATGTAGTCAACAAATATTTGCTAGAAGGATAGAATCCTCAATGCCC  50
      |||||||||||||   |||| | ||||| ||||| ||   ||| |||  |
seq2  TGAGATGTAGTCAGACAATA-TGGCTAG-AGGAT-GA--TCTC-ATG--C  42

seq1  AGAAGCCCCTCCCTCTTTTTTTTTCTATCCCCTTAACTACTATAAGGTTT  100
      ||||| ||||||     |  | ||| |  ||| || ||||||||| ||||
seq2  AGAAGGCCCTCC-----TCATATTCAA--CCCGTACCTACTATAA-GTTT  84

seq1  AGATGACATTATGGCCACA-CAGTATATTCAATGAACACATTAAACCATA  149
      |||||||| ||||| |||| |||||||||||||| ||||| ||| |||||
seq2  AGATGACA-TATGG-CACACCAGTATATTCAATG-ACACA-TAACCCATA  130

seq1  GAGCTTGATATATTTTGGCCACTTTGTTACATCACTCCCCAGAATGTTTC  199
      |||||  ||||||||  | |||||||||||||||||||||||||||||||
seq2  GAGCTGAATATATTT--GGCACTTTGTTACATCACTCCCCAGAATGTTTC  178

seq1  TAACACTCTCAAACATTGCTCTATTCCACTCCCCAGTTATTCTTCCCCTG  249
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  T-ACACTCTC-AACATTGCTCTATTCCACTCCCCAGTTATTCTTCCCCTG  226

seq1  GAATTTGTCTTGAGCTCAATATTCAATGCTCTGCTTCCCACTGATATAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTTGAGCTCAATATTCAATGCTCTGCTTCCCACTGATATAAT  276

seq1  TTTTCTTTTGTAGAATTCCATGTAAATGGACTCACGTGTAGCATGGACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTAGAATTCCATGTAAATGGACTCACGTGTAGCATGGACTC  326

seq1  TCCTTCACTTCCTTCACTCACTATATATTTTTTAATTGATGCTAAATTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTTCCTTCACTCACTATATATTTTTTAATTGATGCTAAATTGT  376

seq1  GACATGATTCCCTGGTTTGTTCCTTTTTGTCTGTGATGACCCTTATTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATTCCCTGGTTTGTTCCTTTTTGTCTGTGATGACCCTTATTAGA  426

seq1  TTATATTCACTACACATTTATTTAGTCACATATAAATGGACCAATATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCACTACACATTTATTTAGTCACATATAAATGGACCAATATTAG  476

seq1  GTTCCTCTCCAATGTGGAACAATTTTGAAACAATTTCTAGCATCATTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTCCAATGTGGAACAATTTTGAAACAATTTCTAGCATCATTCAT  526

seq1  GTAAATGTTTGGGATGAAGTCATTCTACCTGTTGAATGTAAAATTGAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTTTGGGATGAAGTCATTCTACCTGTTGAATGTAAAATTGAATG  576

seq1  GAATTTTTGGAAAGTTGCTAAGCATATGATTACTTTAATAAGAAACTACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGGAAAGTTGCTAAGCATATGATTACTTTAATAAGAAACTACG  626

seq1  AAGATGTAGTTCATAAGAATATCTGTACCACTATGATAATGCTTAAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGTTCATAAGAATATCTGTACCACTATGATAATGCTTAAGTAA  676

seq1  GAAAGACAATTCAGGAAATACACATGATAAGACATAAATTCATTCAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAATTCAGGAAATACACATGATAAGACATAAATTCATTCAAACT  726

seq1  GTCTCCATGCCGACACACAGTCTTTGCATTCGCTGGTCCCTTTACCTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGCCGACACACAGTCTTTGCATTCGCTGGTCCCTTTACCTCAA  776

seq1  ACAGTGAACTCTGCCCTAGTTTATTGACAGAGAAAGATAAATTTGTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAACTCTGCCCTAGTTTATTGACAGAGAAAGATAAATTTGTCTCT  826

seq1  TTTCCTATTACCTTACACTTACATCTGCTCTCATAGGTATAAATGAAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTACCTTACACTTACATCTGCTCTCATAGGTATAAATGAAGCT  876

seq1  GGATCCTTTTATAGTTCTGGCTTACAAGTGATTGCTGAATTTCACTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTTTATAGTTCTGGCTTACAAGTGATTGCTGAATTTCACTTTAG  926

seq1  GGAGCAATTTTGCTAAAGGAGATGATGGTTTAGAACATGATAATGGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATTTTGCTAAAGGAGATGATGGTTTAGAACATGATAATGGGAAA  976

seq1  GAAAATTAAGACGATGAAATAAGCACTCAGATTGATCTTTGGGGCCCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAGACGATGAAATAAGCACTCAGATTGATCTTTGGGGCCCCAG  1026

seq1  TTCTCTCCATCAGAGAAGGAGACATAATAAAAATGCTATCTAGCTCTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCATCAGAGAAGGAGACATAATAAAAATGCTATCTAGCTCTTGT  1076

seq1  CATGTCATGTGAATTAAGACTTAGGAGTTTCTTAGTGGAAAACATTTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATGTGAATTAAGACTTAGGAGTTTCTTAGTGGAAAACATTTTAT  1126

seq1  AACTGGTAACATTTTTCAGTGAATTC  1175
      ||||||||||||||||||||||||||
seq2  AACTGGTAACATTTTTCAGTGAATTC  1152


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