BAC Information

Click to search

BAC

Clone NameB6Ng01-246J09
Chromosome3 (Build37)
Map Location 73,924,636 - 74,110,554
singlet/doubletdoublet
Overlap geneLOC619764
Upstream geneBche, LOC667425
Downstream geneLOC667434, LOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J09.bB6Ng01-246J09.g
ACCGA055164GA055165
length1,1531,136
definitionB6Ng01-246J09.b B6Ng01-246J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,109,410 - 74,110,554)(73,924,636 - 73,925,774)
sequence
gaattcacaaaaaatcaaaaatatgaaaaagtaagggaatgttagacttt
taatttaaaaatttcatacacacacacatatatatatatatatatatata
tatatatatatatatatatagtagaaaaaatataatatgctgagcaaggc
attgtacatcatatattactagcatgaaaattaatgtgtaagtaatttta
atattaataacatgattaaaatgtgtatgatattttaaaatatatttagc
atgcaaatcacctctaagtcagttttttcatctttgcttgtgaaaagtgt
tttaatgaatatgaggtatgatttctgtaggagaaagaaggtcattaagt
tatcacataaggacatagatagaggtagagattaacccaatatttgggta
tttttcttttattttaattgagaagatccctcttacttaagctttcagtg
aaaagtctctgtgtacaaagtaccaaaaatccagtgtgtaaaagaaagca
actgttaacctactcatagatacattgtttgaaagaaacttggatgatat
tggctagactggaagtgagcctttactgataggaatgtacatggcattat
taacaagaacaggtaataaggaattgaatatactatagattgaaatgaac
tatttttctggagccactcagcagagatttaaatagccctttatttcctg
cagtgaaaattcataagcaaagtggaaaaatttgttcatggaatattttg
ttctatgataaaagcccttagaacttcattgatctcactttcagcataaa
tcaattacctcagtgaatataaacactttttgaagggaaatattatgact
atctggggaagtctggtgttatagacgctctactttgactcaagaaatta
ttcagtagagggctatttaattttccttgggtttttgtctgtctttggat
ttttttcacatagttttgccagtgggaaataaaatatttagggatatagc
ctacccagaaatgcaaattatgccattcaagagtagagatgaatatttat
cctttaagttttcaatgtatccagcactgacttattatcaggtacacatg
atttcagaatgtgtgttctaatttaaggtctttttcctgacacactctca
gtt

gaattctttcaattggtagccagagacttgacctttgttgatatttgtgt
tattattgtgtcaataaacaactccagatgataatgaattgagagtttaa
attagctctagctagatagacatgaattaacgtatatacattacaatgtt
aaagtttatttttagggcttcatcattcagtctatatctctataatttgt
tactaatatagtttccttgataaataatacatgtatgatatgccttattc
ggtttaggtactgaaggtcatttcctatttgcataaaaatgataaaatat
ttacaacttgtactattggatttttaaaagttacttatatatcaaatatg
aactagtatattttacataaaatgcatattttacatagtgtataatacac
tataaaatattgtatattaatataactttatttttattttgaagtataaa
tgtatgcacatatatattaaagtgctccattattctcctttattgtcctt
atcaccttggcataataattaaggtaactaaaacttttaaaatcctgaaa
aagtagtcatcctaagacgaacaaaaagcaatcaaaatcctaaaatgtat
ttgcattagatttatatcctctatttccatgtaactttgatgcaactgag
agtcaaatacagaaaatgaacacattctcaaatttctattttgggtatgt
atactaatatttagctaaacttaaattgattttcagacttattggaaaat
taaggaattcacttttaggcttactaggaagaaaacagcacaaggcaaag
gaatttgtctacttttccccaggaaagcctgaaaacccaatgttgctcaa
tgttagtatttcaatgattgttgaataaattatttaggtcacaaaagaaa
atgataaaataataaaggcataccgttcatataatttgtttattactcat
atatttataaagtatgttgctagatgaggatatgtgactgactacagagc
ttgtatgggtctatttatatatttataattaaatatttaaaaaatatatt
cttagccttctagcttccctcactcaaataaaagattggaacagtaggtt
tattcaattgtgcctaacaatgaagtaagtacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_74109410_74110554
seq2: B6Ng01-246J09.b_48_1200 (reverse)

seq1  AACTGA-AGTGTGTCAGGGAAAAGACTTAAAATTTAGAACACACATCTTG  49
      |||||| ||||||||||| ||||||| | ||| |||||||||||||  ||
seq2  AACTGAGAGTGTGTCAGGAAAAAGACCTTAAA-TTAGAACACACATTCTG  49

seq1  ATATTCATGTGTTCCCTGTATATAGTCAGTGCTTGATACAATTTGAAACT  99
      | | |||||||| ||   ||   |||||||||| ||||| |||  |||||
seq2  A-AATCATGTGTACCTGATAATAAGTCAGTGCTGGATAC-ATTGAAAACT  97

seq1  TAAAAGATAAATATTCATCTCTACTCTTTGATTGCATATTTTGCATTTCT  149
      |||| |||||||||||||||||||||||  || ||||| |||||||||||
seq2  TAAAGGATAAATATTCATCTCTACTCTTGAATGGCATAATTTGCATTTCT  147

seq1  GGTTA-GCTATATCCCTAAATA-TTTATTTCCCACTGGCAAAACTATGTG  197
      || || |||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGTAGGCTATATCCCTAAATATTTTATTTCCCACTGGCAAAACTATGTG  197

seq1  AAAAAAAT-CAAAGACAGACAAAAACCAAAGGAAAATTAAATAG-CCTCT  245
      |||||||| |||||||||||||||||| |||||||||||||||| |||||
seq2  AAAAAAATCCAAAGACAGACAAAAACCCAAGGAAAATTAAATAGCCCTCT  247

seq1  ACTGAATA--TTC-TGAGTC-AAGTAGAGCGTCTATAACACCAGACTTCC  291
      ||||||||  ||| |||||| |||||||||||||||||||||||||||||
seq2  ACTGAATAATTTCTTGAGTCAAAGTAGAGCGTCTATAACACCAGACTTCC  297

seq1  CCAGATAGTCATAATATTT-CCTTC-AAAAGTGTTTATATTCACTGAGGT  339
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CCAGATAGTCATAATATTTCCCTTCAAAAAGTGTTTATATTCACTGAGGT  347

seq1  AATTGATTTATGCTGAAAGTGAGATCAATGAAGTTCTAAGGGCTTTTATC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTATGCTGAAAGTGAGATCAATGAAGTTCTAAGGGCTTTTATC  397

seq1  ATAGAACAAAATATTCCATGAACAAATTTTTCCACTTTGCTTATGAATTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAAAATATTCCATGAACAAATTTTTCCACTTTGCTTATGAATTT  447

seq1  TCACTGCAGGAAATAAAGGGCTATTTAAATCTCTGCTGAGTGGCTCCAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAGGAAATAAAGGGCTATTTAAATCTCTGCTGAGTGGCTCCAGA  497

seq1  AAAATAGTTCATTTCAATCTATAGTATATTCAATTCCTTATTACCTGTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCATTTCAATCTATAGTATATTCAATTCCTTATTACCTGTTC  547

seq1  TTGTTAATAATGCCATGTACATTCCTATCAGTAAAGGCTCACTTCCAGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATAATGCCATGTACATTCCTATCAGTAAAGGCTCACTTCCAGTC  597

seq1  TAGCCAATATCATCCAAGTTTCTTTCAAACAATGTATCTATGAGTAGGTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATATCATCCAAGTTTCTTTCAAACAATGTATCTATGAGTAGGTT  647

seq1  AACAGTTGCTTTCTTTTACACACTGGATTTTTGGTACTTTGTACACAGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGCTTTCTTTTACACACTGGATTTTTGGTACTTTGTACACAGAG  697

seq1  ACTTTTCACTGAAAGCTTAAGTAAGAGGGATCTTCTCAATTAAAATAAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCACTGAAAGCTTAAGTAAGAGGGATCTTCTCAATTAAAATAAAA  747

seq1  GAAAAATACCCAAATATTGGGTTAATCTCTACCTCTATCTATGTCCTTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCCAAATATTGGGTTAATCTCTACCTCTATCTATGTCCTTAT  797

seq1  GTGATAACTTAATGACCTTCTTTCTCCTACAGAAATCATACCTCATATTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACTTAATGACCTTCTTTCTCCTACAGAAATCATACCTCATATTC  847

seq1  ATTAAAACACTTTTCACAAGCAAAGATGAAAAAACTGACTTAGAGGTGAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACACTTTTCACAAGCAAAGATGAAAAAACTGACTTAGAGGTGAT  897

seq1  TTGCATGCTAAATATATTTTAAAATATCATACACATTTTAATCATGTTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCTAAATATATTTTAAAATATCATACACATTTTAATCATGTTAT  947

seq1  TAATATTAAAATTACTTACACATTAATTTTCATGCTAGTAATATATGATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAAAATTACTTACACATTAATTTTCATGCTAGTAATATATGATG  997

seq1  TACAATGCCTTGCTCAGCATATTATATTTTTTCTACTATATATATATATA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCCTTGCTCAGCATATTATATTTTTTCTACTATATATATATATA  1047

seq1  TATATATATATATATATATATATATATATGTGTGTGTGTATGAAATTTTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATGTGTGTGTGTATGAAATTTTT  1097

seq1  AAATTAAAAGTCTAACATTCCCTTACTTTTTCATATTTTTGATTTTTTGT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGTCTAACATTCCCTTACTTTTTCATATTTTTGATTTTTTGT  1147

seq1  GAATTC  1145
      ||||||
seq2  GAATTC  1153


seq1: chr3_73924636_73925774
seq2: B6Ng01-246J09.g_68_1203

seq1  GAATTCTTTCAATTGGTAGCCAGAGACTTGACCTTTGTTGATATTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAATTGGTAGCCAGAGACTTGACCTTTGTTGATATTTGTGT  50

seq1  TATTATTGTGTCAATAAACAACTCCAGATGATAATGAATTGAGAGTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTGTCAATAAACAACTCCAGATGATAATGAATTGAGAGTTTAA  100

seq1  ATTAGCTCTAGCTAGATAGACATGAATTAACGTATATACATTACAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTCTAGCTAGATAGACATGAATTAACGTATATACATTACAATGTT  150

seq1  AAAGTTTATTTTTAGGGCTTCATCATTCAGTCTATATCTCTATAATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTATTTTTAGGGCTTCATCATTCAGTCTATATCTCTATAATTTGT  200

seq1  TACTAATATAGTTTCCTTGATAAATAATACATGTATGATATGCCTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATATAGTTTCCTTGATAAATAATACATGTATGATATGCCTTATTC  250

seq1  GGTTTAGGTACTGAAGGTCATTTCCTATTTGCATAAAAATGATAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGTACTGAAGGTCATTTCCTATTTGCATAAAAATGATAAAATAT  300

seq1  TTACAACTTGTACTATTGGATTTTTAAAAGTTACTTATATATCAAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTGTACTATTGGATTTTTAAAAGTTACTTATATATCAAATATG  350

seq1  AACTAGTATATTTTACATAAAATGCATATTTTACATAGTGTATAATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTATATTTTACATAAAATGCATATTTTACATAGTGTATAATACAC  400

seq1  TATAAAATATTGTATATTAATATAACTTTATTTTTATTTTGAAGTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATTGTATATTAATATAACTTTATTTTTATTTTGAAGTATAAA  450

seq1  TGTATGCACATATATATTAAAGTGCTCCATTATTCTCCTTTATTGTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACATATATATTAAAGTGCTCCATTATTCTCCTTTATTGTCCTT  500

seq1  ATCACCTTGGCATAATAATTAAGGTAACTAAAACTTTTAAAATCCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTGGCATAATAATTAAGGTAACTAAAACTTTTAAAATCCTGAAA  550

seq1  AAGTAGTCATCCTAAGACGAACAAAAAGCAATCAAAATCCTAAAATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCATCCTAAGACGAACAAAAAGCAATCAAAATCCTAAAATGTAT  600

seq1  TTGCATTAGATTTATATCCTCTATTTCCATGTAACTTTGATGCAACTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAGATTTATATCCTCTATTTCCATGTAACTTTGATGCAACTGAG  650

seq1  AGTCAAATACAGAAAATGAACACATTCTCAAATTTCTATTTTGGGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATACAGAAAATGAACACATTCTCAAATTTCTATTTTGGGTATGT  700

seq1  ATACTAATATTTAGCTAAACTTAAATTGATTTTCAGACTTATTGGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATATTTAGCTAAACTTAAATTGATTTTCAGACTTATTGGAAAAT  750

seq1  TAAGGAATTCACTTTTAGGCTTACTAGGAAGAAAACAGCACAAGGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTCACTTTTAGGCTTACTAGGAAGAAAACAGCACAAGGCAAAG  800

seq1  GAATTTGTCTACTTTTCCCCAGGAAAGCCTGAAAACCCAATGTTGCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTACTTTTCCCCAGGAAAGCCTGAAAACCCAATGTTGCTCAA  850

seq1  TGTTAGTATTTCCAATGATTGTTGAATAAATTATTTAGGTCACAAAAGAA  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTATTT-CAATGATTGTTGAATAAATTATTTAGGTCACAAAAGAA  899

seq1  AATGATAAAATAATAAAGGCATACCGTTCATATAATTTGTTTATTACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAATAATAAAGGCATACCGTTCATATAATTTGTTTATTACTCA  949

seq1  TATATTTATAAAGTATGTTGCTAGATGAGGATATGTGACTGACTACAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATATTTATAAAGTATGTTGCTAGATGAGGATATGTGACTGACTACA-GA  998

seq1  GCTTGTATGGGTCTATTTATATATTTATATTTTAAATATTT-AAAAATAT  1049
      |||||||||||||||||||||||||||||  |||||||||| ||||||||
seq2  GCTTGTATGGGTCTATTTATATATTTATA-ATTAAATATTTAAAAAATAT  1047

seq1  ATTCCTAGCTTTCTAAGCTCCCTTCACTCAAAT-AAAGATT-GAACAGTA  1097
      |||| |||| |||| |||| || |||||||||| ||||||| ||||||||
seq2  ATTCTTAGCCTTCT-AGCTTCCCTCACTCAAATAAAAGATTGGAACAGTA  1096

seq1  -GTTTATCAAAATTGTGGCTATACCATGAAGTAAGTTACAAAA  1139
       ||||||   ||||||| ||| || |||||||||| |||||||
seq2  GGTTTAT-TCAATTGTGCCTA-ACAATGAAGTAAG-TACAAAA  1136


| Home | SequenceCutter | Blast | Download |