BAC Information

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BAC

Clone NameB6Ng01-247D24
Chromosome3 (Build37)
Map Location 7,850,053 - 7,944,311
singlet/doubletdoublet
Overlap geneLOC620822
Upstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
Downstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247D24.bB6Ng01-247D24.g
ACCGA055633GA055634
length1101,104
definitionB6Ng01-247D24.b B6Ng01-247D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,850,053 - 7,850,162)(7,943,214 - 7,944,311)
sequence
tcacctgaggaataccgaatggctgagaagcacctgaaaaaaaaatgttc
aacatcctttagcaatttctaaagatgcctatagatggatgggtagggga
ttgggggggg
gaattctttagtggcctgttaaaagaataagctttcgtttttctgcctca
agaagctgaggcaattaagggaagatgtggagcgctggggtgctgcgttt
ccgttgttacctggagtctgttctttccaaagccccctttgcttacaagt
ggatccgacagcactaatttatgagggtggttttacttgagttacttgtt
ctcactgttaagtcgttttcataattgctaattagatgtcaagaaaagta
ttactagaggatagagttcctttctgtcaggctgttgcaacataatactc
cctctgcatgttgctctgtgtgagtgtatgtacataactggcttaaagag
ctcagtgcctcgagccccgtgcctccatagactgtgactatatgtggcca
attacatttcctctgtttttaataatgtggccattgatttactagcccac
attcttctctgatcattaatttttatgggcttccatcttttgaatcatcc
acatgtggtttgttacagcagcactttcctgccaccatgtattttaagct
tataaacagaacagaatcatattgttcccatagaaactgccaaacactgc
agagccaaagctttgaatctgcaactgttattgtatagaggttcatgccc
tgtagcagcatatctaatttccagtgtccttgacaggaagatgcagttaa
ccccaatgccattacatctaattgtttattttattttcattttatacagg
ttggatctgttgtaaccattcaggaggggtaagtccatcacagccaatca
agtcaggtttgctgcgaatgagaaaagagtctcattctaaagaaaagaat
ggaaaatcaagggtgaaatttccataatttttattcatccatccatccat
tcattcattcacttgctcattcattcaaatattattataactaacgcaga
tgaggcaggcctacttcagtcctggggaattctagtgatgagcaggacaa
agtttctgactctgatgcttaccatacaaagaatatgggaaataaaattt
ccaattgagagaggaggagagagagagacggatgagagaaggaaggagag
agag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7850053_7850162
seq2: B6Ng01-247D24.b_51_160

seq1  TCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAAAATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAAAATGTTC  50

seq1  AACATCCTTTAGCAATTTCTAAAGATGCCTATAGATGGATGGGTAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTTAGCAATTTCTAAAGATGCCTATAGATGGATGGGTAGGGGA  100

seq1  TTGGGGGGGG  110
      ||||||||||
seq2  TTGGGGGGGG  110

seq1: chr3_7943214_7944311
seq2: B6Ng01-247D24.g_66_1169 (reverse)

seq1  --CTCTCTC--TCTTTCTCTC-TCTGTCTCTCTCTTTCTCTCTCTCTCAT  45
        |||||||  || ||||||| || |||||||||| ||   |||||||| 
seq2  CTCTCTCTCCTTCCTTCTCTCATCCGTCTCTCTCTCTCCTCCTCTCTCAA  50

seq1  TTTGGGAAATTTTATTT-CCATATTCTTTGTATGGTAAGCATCAGAGTCA  94
      ||  ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TT--GGAAATTTTATTTCCCATATTCTTTGTATGGTAAGCATCAGAGTCA  98

seq1  GAAACTTTGTCCTGCTCATCACTAGAATT-CCCAGGACTGAAGTAGGCCT  143
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAACTTTGTCCTGCTCATCACTAGAATTCCCCAGGACTGAAGTAGGCCT  148

seq1  GCCTCATCTGCGTTAGTTATAATAATATTTGAATGAATGAGCAAGTGAAT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCTGCGTTAGTTATAATAATATTTGAATGAATGAGCAAGTGAAT  198

seq1  GAATGAATGGATGGATGGATGAATAAAAATTATGGAAATTTCACCCTTGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGGATGGATGGATGAATAAAAATTATGGAAATTTCACCCTTGA  248

seq1  -TTTCCATTCTTTTCTTTAGAATGAGACTCTTTTCTCATTCGCAGCAAAC  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTCTTTTCTTTAGAATGAGACTCTTTTCTCATTCGCAGCAAAC  298

seq1  CTGACTTGATTGGCTGTGATGGACTTACCCCTCCTGAATGGTTACAACAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGATTGGCTGTGATGGACTTACCCCTCCTGAATGGTTACAACAG  348

seq1  ATCCAACCTGTATAAAATGAAAATAAAATAAACAATTAGATGTAATGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCTGTATAAAATGAAAATAAAATAAACAATTAGATGTAATGGCA  398

seq1  TTGGGGTTAACTGCATCTTCCTGTCAAGGACACTGGAAATTAGATATGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTAACTGCATCTTCCTGTCAAGGACACTGGAAATTAGATATGCT  448

seq1  GCTACAGGGCATGAACCTCTATACAATAACAGTTGCAGATTCAAAGCTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGGCATGAACCTCTATACAATAACAGTTGCAGATTCAAAGCTTT  498

seq1  GGCTCTGCAGTGTTTGGCAGTTTCTATGGGAACAATATGATTCTGTTCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCAGTGTTTGGCAGTTTCTATGGGAACAATATGATTCTGTTCTG  548

seq1  TTTATAAGCTTAAAATACATGGTGGCAGGAAAGTGCTGCTGTAACAAACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCTTAAAATACATGGTGGCAGGAAAGTGCTGCTGTAACAAACC  598

seq1  ACATGTGGATGATTCAAAAGATGGAAGCCCATAAAAATTAATGATCAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGATGATTCAAAAGATGGAAGCCCATAAAAATTAATGATCAGAG  648

seq1  AAGAATGTGGGCTAGTAAATCAATGGCCACATTATTAAAAACAGAGGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGGGCTAGTAAATCAATGGCCACATTATTAAAAACAGAGGAAA  698

seq1  TGTAATTGGCCACATATAGTCACAGTCTATGGAGGCACGGGGCTCGAGGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGGCCACATATAGTCACAGTCTATGGAGGCACGGGGCTCGAGGC  748

seq1  ACTGAGCTCTTTAAGCCAGTTATGTACATACACTCACACAGAGCAACATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCTTTAAGCCAGTTATGTACATACACTCACACAGAGCAACATG  798

seq1  CAGAGGGAGTATTATGTTGCAACAGCCTGACAGAAAGGAACTCTATCCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGTATTATGTTGCAACAGCCTGACAGAAAGGAACTCTATCCTC  848

seq1  TAGTAATACTTTTCTTGACATCTAATTAGCAATTATGAAAACGACTTAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATACTTTTCTTGACATCTAATTAGCAATTATGAAAACGACTTAAC  898

seq1  AGTGAGAACAAGTAACTCAAGTAAAACCACCCTCATAAATTAGTGCTGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAACAAGTAACTCAAGTAAAACCACCCTCATAAATTAGTGCTGTC  948

seq1  GGATCCACTTGTAAGCAAAGGGGGCTTTGGAAAGAACAGACTCCAGGTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACTTGTAAGCAAAGGGGGCTTTGGAAAGAACAGACTCCAGGTAA  998

seq1  CAACGGAAACGCAGCACCCCAGCGCTCCACATCTTCCCTTAATTGCCTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGAAACGCAGCACCCCAGCGCTCCACATCTTCCCTTAATTGCCTCA  1048

seq1  GCTTCTTGAGGCAGAAAAACGAAAGCTTATTCTTTTAACAGGCCACTAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGAGGCAGAAAAACGAAAGCTTATTCTTTTAACAGGCCACTAAA  1098

seq1  GAATTC  1098
      ||||||
seq2  GAATTC  1104