BAC Information

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BAC

Clone NameB6Ng01-247J13
Chromosome3 (Build37)
Map Location 109,654,458 - 109,655,539
singlet/doubletsinglet
Overlap geneNtng1
Upstream geneFndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247J13.bB6Ng01-247J13.g
ACCGA055889GA055890
length1,0901,174
definitionB6Ng01-247J13.b B6Ng01-247J13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagctgtcagggtaactggcattacacgtctaaggaagaggtg
cacaagtcaccattttatgtgtattcccagtacacctgtgccaacagcca
ccaggaaatttgaatacccagatcatgttctattgcatcagaaatggaca
caagaaaagagccctgaggtgctgaacaacaaagcaaagctagcctagat
ttggtttggtgattgttttacttactaccgatactggaaatgctggggat
acctgcagaggaaaaaacaaaacaaaacaaaacaaaaaaagaagtgttac
tatttgctatgtgacatctttatcgtaaaaatcttacaaatgtgacactt
gataactaagattattagaaattgctacagaaaaatttgcatgaaatatg
tgtatatgtatttatacacaagtgctggaaccatttgcacgtattcacaa
actcctcagctcatcagaattgaaagattaatgtccactttcaatcagta
ttgcaagggtgcctggtgacatcgaacattttatgctcatttatagtatc
aatggattaattatatgtggctcagagcatatattgagctaggcttttgt
tctgaccaccttactgagtaaaccctatgtgcacccgtgcaaatatagct
gcatgtgcagtaggtctctcttgatacattatgaggtgcaagcattaact
gctgaaaaatcatttgacagcttgtttgattaatttcacatagtcatcct
tcttactcttcttttacctgtcagatacgtggattaaaccctgtaatagg
aacttaattgagcagaataattcaagaaagcattacactgttcatattga
tcatggatttcaccaatgattcagcttctcgttgattcacatttcagagt
ttggcctgatgtggtagaaatgtgggacattcattttactctgcatctgc
agtacgagtcctaccatgcactataatactttgagctaacacagaatctc
agcagccagaacatctaggttccaaaggatggctcccaactctttaaatt
tcatacttactttggggtcttgggaaagttcctggtgatc
gaattctcccctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggcaaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactcctgaaatcagtctggcggttcctca
gacaattagacatagtactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcctagaaac
ttaggatacccaagatatgatacaacttgccaaatgcatgaaattcaaga
agaatgaagaccaaagtgtggacactttaccctttcttagaaatgggaac
aaaacacccatagaaggagttacagagacaaaatttggagctgtgatgaa
aggatggaccatctagtgattgccatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctcttcttgtgagactatgccagggcctagcaaac
acagaagtggatgatcacagtcaactattggatgggtcacaaggccctaa
tggaggagctagaaaaaattacccaaggagcttaaaggaacttgcaactc
ctataggtggaacacatatgaactaaccagtaccaggagctcttgtcttt
agctgcatatgtatcaaaagattgcctagtccggcccatcactgcaagag
aagtccaattggaacttgcacctttaatgcccagtacagggtatcgcctg
ggttataaaatggggagttggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109654458_109655539
seq2: B6Ng01-247J13.b_49_1138

seq1  GAATTCAAAGCTGTCAGGGTAACTGGCATTACACGTCTAAGGAAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTGTCAGGGTAACTGGCATTACACGTCTAAGGAAGAGGTG  50

seq1  CACAAGTCACCATTTTATGTGTATTCCCAGTACACCTGTGCCAACAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCACCATTTTATGTGTATTCCCAGTACACCTGTGCCAACAGCCA  100

seq1  CCAGGAAATTTGAATACCCAGATCATGTTCTATTGCATCAGAAATGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATTTGAATACCCAGATCATGTTCTATTGCATCAGAAATGGACA  150

seq1  CAAGAAAAGAGCCCTGAGGTGCTGAACAACAAAGCAAAGCTAGCCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGAGCCCTGAGGTGCTGAACAACAAAGCAAAGCTAGCCTAGAT  200

seq1  TTGGTTTGGTGATTGTTTTACTTACTACCGATACTGGAAATGCTGGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGGTGATTGTTTTACTTACTACCGATACTGGAAATGCTGGGGAT  250

seq1  ACCTGCAGAGGAAAAAACAAAACAAAACAAAACAAAAAAAGAAGTGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGAGGAAAAAACAAAACAAAACAAAACAAAAAAAGAAGTGTTAC  300

seq1  TATTTGCTATGTGACATCTTTATCGTAAAAATCTTACAAATGTGACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTATGTGACATCTTTATCGTAAAAATCTTACAAATGTGACACTT  350

seq1  GATAACTAAGATTATTAGAAATTGCTACAGAAAAATTTGCATGAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAAGATTATTAGAAATTGCTACAGAAAAATTTGCATGAAATATG  400

seq1  TGTATATGTATTTATACACAAGTGCTGGAACCATTTGCACGTATTCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTATTTATACACAAGTGCTGGAACCATTTGCACGTATTCACAA  450

seq1  ACTCCTCAGCTCATCAGAATTGAAAGATTAATGTCCACTTTCAATCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCAGCTCATCAGAATTGAAAGATTAATGTCCACTTTCAATCAGTA  500

seq1  TTGCAAGGGTGCCTGGTGACATCGAACATTTTATGCTCATTTATAGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGGTGCCTGGTGACATCGAACATTTTATGCTCATTTATAGTATC  550

seq1  AATGGATTAATTATATGTGGCTCAGAGCATATATTGAGCTAGGCTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTAATTATATGTGGCTCAGAGCATATATTGAGCTAGGCTTTTGT  600

seq1  TCTGACCACCTTACTGAGTAAACCCTATGTGCACCCGTGCAAATATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCACCTTACTGAGTAAACCCTATGTGCACCCGTGCAAATATAGCT  650

seq1  GCATGTGCAGTAGGTCTCTCTTGATACATTATGAGGTGCAAGCATTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCAGTAGGTCTCTCTTGATACATTATGAGGTGCAAGCATTAACT  700

seq1  GCTGAAAAATCATTTGACAGCTTGTTTGATTAATTTCACATAGTCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAATCATTTGACAGCTTGTTTGATTAATTTCACATAGTCATCCT  750

seq1  TCTTACTCTTCTTTTACCTGTCAGATACGTGGATTAAACCCTGTAATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCTTCTTTTACCTGTCAGATACGTGGATTAAACCCTGTAATAGG  800

seq1  AACTTAATTGAGCAGAATAATTCAAGAAAGCATTACACTGTTCATATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATTGAGCAGAATAATTCAAGAAAGCATTACACTGTTCATATTGA  850

seq1  TCATGGA-TTCACCAATGATTCAGCTTCTCGTTGATTCACATTTCAGAGT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTTCACCAATGATTCAGCTTCTCGTTGATTCACATTTCAGAGT  900

seq1  TTGGCCTGATGTGGTAGAAATGT-GGACATTCA-TTTACTCTGCATCTGC  947
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TTGGCCTGATGTGGTAGAAATGTGGGACATTCATTTTACTCTGCATCTGC  950

seq1  AGTACGAGTCCTACCATGCACTATAATACTTTGAGCTAACACAGAATCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGAGTCCTACCATGCACTATAATACTTTGAGCTAACACAGAATCTC  1000

seq1  AGCAGCCAGAACATCTAGGTT-CAAAGGATGGCT-CCAACTCTT--AAAT  1043
      ||||||||||||||||||||| |||||||||||| |||||||||  || |
seq2  AGCAGCCAGAACATCTAGGTTCCAAAGGATGGCTCCCAACTCTTTAAATT  1050

seq1  TCATACTAACTTTGGGGTCTTGGG-AAGTTCCTTGTGATC  1082
      ||||||| |||||||||||||||| |||||||| ||||||
seq2  TCATACTTACTTTGGGGTCTTGGGAAAGTTCCTGGTGATC  1090