BAC Information

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BAC

Clone NameB6Ng01-250B18
Chromosome3 (Build37)
Map Location 124,937,151 - 125,072,373
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a, Arsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250B18.bB6Ng01-250B18.g
ACCGA057745GA057746
length1,1391,173
definitionB6Ng01-250B18.b B6Ng01-250B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,071,227 - 125,072,373)(124,937,151 - 124,938,330)
sequence
gaattcatcaatgattatagtgcttaataacccttcctgtagtgttaaat
ctagaaattttctagtatacaccaaaaagaccagtgaggccctgaacatg
ctgctcagcctctgtgaatcagtctgtgcatggatcctgttgatttagat
agtcttgtttccttggtctctttcttcttctccagttcctacgttctttc
tacctcttcttctgtaaggctccctgattcctcagggagagggatttgat
ggagacatcttttttaaaaattaacttaatttttcaatataccccaacca
caatttcctttctctcccctcttcccagatcccagtcccaccccaggtac
cttaaactctttcttagatctgctgcacatcaattctttgcagagtaaag
gtctcccagggatctcagctgaactcaacttaacaacttctaataagact
aggcacaaaccctcatatgaaggctggatgaggcaatctagtaggaggga
aagggtcccaaaggcaggcaaaagagtcagagatattctccatcccttcg
gttataactcccacaagaacattaagcaacgtaagaggacctagcacaga
cccatgaaggccccatgattgttgcttcagtctctgtgacctcctatgag
tgctgcttttgttgattatgtcatctgtgtggagactttccttttgtttg
tttgggttttttgtttgtttgtctgtttgtttgtttttgttttttttgag
acagggtttctctgtgtagccctagctgtcctggaactcactctgtagac
caggctagcctcaaactcagagatctgcctgcctctgcttcccagtgctg
agattaaaggcatgcgccaacactgctgggctgagactttccttttaaga
ggagtgttccaaagttcttctcttgagcatattgtctgtgtgtacgtctc
tatttgttctcatctgcagcaagaaaaaggagcccagttttcaagaatag
agtgcactagtaactgtggctaccttgctgtaccttgttttcaacaaagg
tgagattgtgtcctcaatcatttccccagtcccatgtctgagccaagtgc
tcacaaggctaattaacatctccattcacaccttacttg

gaattcaaaattattttctgattcccatttgtctcaggtatacacatagt
acacatagttgcatgtgggcaaatcaatcatacacatgaaatttttaaaa
aattctgaaagtaaaataaatttctttgttctgattctttgaccattcac
acttttatgttcatatttgtgtttgtatgtttatttatgctgctatagca
cattgatattgagtggggttctaaacacattcataaaaaatatcaaagtt
tgaaatcttagataaccaataaaatatctttttcttttcttcctaagact
acatggtaaaaaaacccacaaacagcttcaaagatgatgctttcttaaat
tatgtttaaagctataaagaggctgtgattagaggtcaactgaaagcagg
catacctttattgtaaggtcattacaggatcttgagtgatacctaattta
aagtccatgaaaataaattgaaagatcactttttatgaattcataatggc
cttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatga
aggcagtatgcctttgaccaaaccagtctttatgcttgcctgagaacctt
agcttaggaaacaatcactttattcatctataggataaaatacttgcaaa
tttcaacgtaagaaatgggtggaacttaggggcataattaggataattag
tgtgtaactattttacattattgtattgttgtacattataagcacataat
gaatttcagctacatgtaatagaattgtttgtaatagagtcatgacaaac
acttaaagtacaacattggttattaaaattaacataggttaattttagca
gtaattttattaaaagttttaataaatgatcttttatataaagtcattgg
accccatgcttcaatttaataatataacatcaaatatactgtttaatatg
caatcatcattaaataaacatttgtatttagagcaaaactataaaatgcg
tgtctatgaaatgaatttttaagtaaggattgaattaaacatagcatttt
ggtttcttctggtatctgaagtgttagtatcataaatcctcaaacgaaga
acagatcaactattcataatatcagcatggaccttcttctagtatcataa
attcagacatctcttccaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125071227_125072373
seq2: B6Ng01-250B18.b_44_1182 (reverse)

seq1  CAAGTAGAGTGTGAAAAGGGAGATGTTATATAGC--TGTGAGCACTTGGG  48
      ||||||  |||||  || ||||||||||  ||||  ||||||||||| ||
seq2  CAAGTAAGGTGTG--AATGGAGATGTTAATTAGCCTTGTGAGCACTT-GG  47

seq1  CTCAGACATGGGGACTTTGGGGAAATGATGGAAGACACAAATCTTCACTT  98
      ||||||||| |||||  |||||||||||| || ||||| |||| |||| |
seq2  CTCAGACAT-GGGAC--TGGGGAAATGATTGAGGACAC-AATC-TCACCT  92

seq1  TGTTTGAAAACAAGGTACAGCAAGGTAGCCACAGTTACTAGTGCACTCTA  148
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAACAAGGTACAGCAAGGTAGCCACAGTTACTAGTGCACTCTA  142

seq1  TTCTTGAAAACTGGGCTCCTTTTTCTTGCTGCAGATGAGAACAAATAGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAAACTGGGCTCCTTTTTCTTGCTGCAGATGAGAACAAATAGAG  192

seq1  ACGTACACACAGACAATATGCTCAAGAGAAGAACTTTGGAACACTCCTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACGTACACACAGACAATATGCTCAAGAGAAGAACTTTGGAACACTCCTC-  241

seq1  TTAAAAGGAAAGTCTCAGCCCAGCAGTGTTGGCGCATGCCTTTAATCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAAGTCTCAGCCCAGCAGTGTTGGCGCATGCCTTTAATCTCA  291

seq1  GCACTTGGGAAGCAGAGGCAGGCAGATCTCTGAGTTTGAGGCTAGCCTGG  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAC-TGGGAAGCAGAGGCAGGCAGATCTCTGAGTTTGAGGCTAGCCTGG  340

seq1  TCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTC  390

seq1  TCAAAAAAAACAAAAACAAACAAACAGACAAACAAACAAAAAACCCAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAACAAAAACAAACAAACAGACAAACAAACAAAAAACCCAAAC  440

seq1  AAACAAAAGGAAAGTCTCCACACAGATGACATAATCAACAAAAGCAGCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGGAAAGTCTCCACACAGATGACATAATCAACAAAAGCAGCAC  490

seq1  TCATAGGAGGTCACAGAGACTGAAGCAACAATCATGGGGCCTTCATGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAGGTCACAGAGACTGAAGCAACAATCATGGGGCCTTCATGGGT  540

seq1  CTGTGCTAGGTCCTCTTACGTTGCTTAATGTTCTTGTGGGAGTTATAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAGGTCCTCTTACGTTGCTTAATGTTCTTGTGGGAGTTATAACC  590

seq1  GAAGGGATGGAGAATATCTCTGACTCTTTTGCCTGCCTTTGGGACCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATGGAGAATATCTCTGACTCTTTTGCCTGCCTTTGGGACCCTTT  640

seq1  CCCTCCTACTAGATTGCCTCATCCAGCCTTCATATGAGGGTTTGTGCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTACTAGATTGCCTCATCCAGCCTTCATATGAGGGTTTGTGCCTA  690

seq1  GTCTTATTAGAAGTTGTTAAGTTGAGTTCAGCTGAGATCCCTGGGAGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTAGAAGTTGTTAAGTTGAGTTCAGCTGAGATCCCTGGGAGACC  740

seq1  TTTACTCTGCAAAGAATTGATGTGCAGCAGATCTAAGAAAGAGTTTAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTGCAAAGAATTGATGTGCAGCAGATCTAAGAAAGAGTTTAAGG  790

seq1  TACCTGGGGTGGGACTGGGATCTGGGAAGAGGGGAGAGAAAGGAAATTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGTGGGACTGGGATCTGGGAAGAGGGGAGAGAAAGGAAATTGT  840

seq1  GGTTGGGGTATATTGAAAAATTAAGTTAATTTTTAAAAAAGATGTCTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGGTATATTGAAAAATTAAGTTAATTTTTAAAAAAGATGTCTCCA  890

seq1  TCAAATCCCTCTCCCTGAGGAATCAGGGAGCCTTACAGAAGAAGAGGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCTCTCCCTGAGGAATCAGGGAGCCTTACAGAAGAAGAGGTAG  940

seq1  AAAGAACGTAGGAACTGGAGAAGAAGAAAGAGACCAAGGAAACAAGACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACGTAGGAACTGGAGAAGAAGAAAGAGACCAAGGAAACAAGACTA  990

seq1  TCTAAATCAACAGGATCCATGCACAGACTGATTCACAGAGGCTGAGCAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCAACAGGATCCATGCACAGACTGATTCACAGAGGCTGAGCAGC  1040

seq1  ATGTTCAGGGCCTCACTGGTCTTTTTGGTGTATACTAGAAAATTTCTAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGGGCCTCACTGGTCTTTTTGGTGTATACTAGAAAATTTCTAGA  1090

seq1  TTTAACACTACAGGAAGGGTTATTAAGCACTATAATCATTGATGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACTACAGGAAGGGTTATTAAGCACTATAATCATTGATGAATTC  1139


seq1: chr3_124937151_124938330
seq2: B6Ng01-250B18.g_66_1238

seq1  GAATTCAAAATTATTTTCTGATTCCCATTTGTCTCAGGTATACACATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTATTTTCTGATTCCCATTTGTCTCAGGTATACACATAGT  50

seq1  ACACATAGTTGCATGTGGGCAAATCAATCATACACATGAAATTTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGTTGCATGTGGGCAAATCAATCATACACATGAAATTTTTAAAA  100

seq1  AATTCTGAAAGTAAAATAAATTTCTTTGTTCTGATTCTTTGACCATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAAAGTAAAATAAATTTCTTTGTTCTGATTCTTTGACCATTCAC  150

seq1  ACTTTTATGTTCATATTTGTGTTTGTATGTTTATTTATGCTGCTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTTCATATTTGTGTTTGTATGTTTATTTATGCTGCTATAGCA  200

seq1  CATTGATATTGAGTGGGGTTCTAAACACATTCATAAAAAATATCAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATTGAGTGGGGTTCTAAACACATTCATAAAAAATATCAAAGTT  250

seq1  TGAAATCTTAGATAACCAATAAAATATCTTTTTCTTTTCTTCCTAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTTAGATAACCAATAAAATATCTTTTTCTTTTCTTCCTAAGACT  300

seq1  ACATGGTAAAAAAACCCACAAACAGCTTCAAAGATGATGCTTTCTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAAAAAAACCCACAAACAGCTTCAAAGATGATGCTTTCTTAAAT  350

seq1  TATGTTTAAAGCTATAAAGAGGCTGTGATTAGAGGTCAACTGAAAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAAAGCTATAAAGAGGCTGTGATTAGAGGTCAACTGAAAGCAGG  400

seq1  CATACCTTTATTGTAAGGTCATTACAGGATCTTGAGTGATACCTAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTTATTGTAAGGTCATTACAGGATCTTGAGTGATACCTAATTTA  450

seq1  AAGTCCATGAAAATAAATTGAAAGATCACTTTTTATGAATTCATAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGAAAATAAATTGAAAGATCACTTTTTATGAATTCATAATGGC  500

seq1  CTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGAAATCATAAAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGAAATCATAAAAATGA  550

seq1  AGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCTTGCCTGAGAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCTTGCCTGAGAACCTT  600

seq1  AGCTTAGGAAACAATCACTTTATTCATCTATAGGATAAAATACTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAAACAATCACTTTATTCATCTATAGGATAAAATACTTGCAAA  650

seq1  TTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATAATTAGGATAATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATAATTAGGATAATTAG  700

seq1  TGTGTAACTATTTTACATTATTGTATTGTTGTACATTATAAGCACATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTATTTTACATTATTGTATTGTTGTACATTATAAGCACATAAT  750

seq1  GAATTTCAGCTACATGTAATAGAATTGTTTGTAATAGAGTCATGACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGCTACATGTAATAGAATTGTTTGTAATAGAGTCATGACAAAC  800

seq1  ACTTAAAGTACAACATTGGTTATTAAAATTAACATAGGTTAATTTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTACAACATTGGTTATTAAAATTAACATAGGTTAATTTTAGCA  850

seq1  GTAATTTTATTAAAAGTTTTAATAAATGATCTTTTATATAAAGTCATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATTAAAAGTTTTAATAAATGATCTTTTATATAAAGTCATTGG  900

seq1  ACCCCATGCTTCAA-TTAATAATATAACATCAAATATACTGTTTAATATG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCCATGCTTCAATTTAATAATATAACATCAAATATACTGTTTAATATG  950

seq1  CAATCATCATTAAATAAACATTTGTATTTTAGAGCAAAACTATAAAATGC  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATCATCATTAAATAAACATTTGTA-TTTAGAGCAAAACTATAAAATGC  999

seq1  GTGTTCTATTGAAATGGAATTTTAAGTAAGGAATTTGAATTAAACATAGC  1049
      ||| |||| ||||||| | |||||||||||||  ||||||||||||||||
seq2  GTG-TCTA-TGAAATGAATTTTTAAGTAAGGA--TTGAATTAAACATAGC  1045

seq1  ATTTTGGTTTC-TCTGGTATCTGAAGTTGGTAGGTTATCATAAATCCTCA  1098
      ||||||||||| |||||||||||||| || |||  |||||||||||||||
seq2  ATTTTGGTTTCTTCTGGTATCTGAAG-TGTTAG--TATCATAAATCCTCA  1092

seq1  AACGAGGACCAGAACCAACTA-TCATAAATTTATTCAGCATGAGCTTTCT  1147
      ||||| || ||| | |||||| ||||||   || ||||||||  | ||||
seq2  AACGAAGAACAG-ATCAACTATTCATAA---TA-TCAGCATGGACCTTCT  1137

seq1  CCTAGGTATCATAAATTCAG-CATC---TTCAAAATT  1180
       ||| ||||||||||||||| ||||   | |||||||
seq2  TCTA-GTATCATAAATTCAGACATCTCTTCCAAAATT  1173


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