BAC Information

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BAC

Clone NameB6Ng01-250G11
Chromosome3 (Build37)
Map Location 145,574,893 - 145,576,028
singlet/doubletsinglet
Overlap genenone
Upstream geneAI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331
Downstream geneBcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250G11.bB6Ng01-250G11.g
ACCGA057959GA057960
length1,2471,153
definitionB6Ng01-250G11.b B6Ng01-250G11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattgtcctgaatttcatctagaatccgccctgccttaaccac
ttgataacatgtgaaaaggaacaaaagggcttctaacactagaaaaaatt
caaggccaaacattttccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaaggccaggcttacctcgtaaagctatactcactggtac
tctcgttccccagctgaaaagttctgaattcatgcagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgtgccggtcccgagttttcttgtattttt
tcgtcccggattttttctcgtcccggaatttctcgtcccggatttcagca
ccaattcttaatagcgttctcacgcccggccaggaagaacacaacagacc
agaatcttctgcggcaaaactttattgcttacatcttcaggagctaggag
cgcaaacccccagccccaaaagcgaaaaccccttctatattgaaaccgaa
acccctttcctatttaggagagttatatttcgcctaggacgcatcactcc
ctgattggctgcagcccatggccgagctgacgttcacgggaaaggcagag
tacaagtagtcgtaaaatacccttggcacatgcgcagattatttgtttac
cacttagaacacaggatgtcagcgccatcttggtgacggcgaatgtgggg
ggcggctcccacacaggacagccaggtctatacagagaaaccttgtctcg
aaaccaaaccaaaccaaacaaccaacaaataaacagatgtttagaattcg
atgtagtatattccttctacactttctacatttttaaaataatttctaat
ccagattgacacgaagaaccgttaaggccatttaatgcagggcgctgtac
cacgatcggttttcgttagatagtactacttatgaccatggtcattc
gaattcagagaaggtggatatttggctgagaccactcaagaagacagtga
ccatctttgttttgctggacagatggtaggcagttcacgctctgatagtc
gagaagcttattgtcatttgatttcaaatgtggctcttccattccctgtc
attaacccattgtcacctagcgccaggattttaaactataaggggccaca
ctctgaaatatttgaagggtcactacagtcatcaaacacctatttctggt
gttagtgaagctaaggcagagactacaggtcaatgacagagaactgttga
atgcctctataagcctagagaagccaaatgctgcaggaatcctgtccacg
gcccccaccttcctcaatcaccggtttcacgggctgagaaaacaacatgg
ggaacgcacctatctgagtccaaagatttttaacggaacaagaccaaatc
tatccttaaacactttgtgtgggtcacaaaggcagctcacatgacctctg
cctgtctcagtgactgagtcagaactctgtaggtttcggtcatttcactt
ttagtagccacacttaaaataataaatgagccaggtgaagttgatttcac
cacggtatttagcactgcacatctaaaatataatgaggttgtgtggtcgt
tataaagttaacagtgaggtgttttgttccctttctctgtgatactgtgc
tgggactccagtgtctatttgacatttggaatgcaactcagttctgaata
aactactttccaaatatttgctagccagatgtggttattgattagttacc
acagtagtcaaagcggttcgattctattcctgaaaactttccccatgcaa
ggctggggagacggctccatgggtaaaagcgttttgttaggccggcatga
gaacatgaattctatccctgaactcaggtaaaaaggcaagttttgggtgg
gtgtgagcttgaaagaagggaaagggccagaaggctcttctggggctcaa
cttgggccaaggcaggctaatcctagtgatgagcttcaaagccagttgag
agagcctggtctgaagaacaaactgacggctactcaataacagcaccgaa
gactcctctgtcatcacccacacaccaatgggatggagcccctaggttgg
cta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145574893_145576028
seq2: B6Ng01-250G11.g_68_1220

seq1  GAATTCAGAGAAGGTGGATATTTGGCTGAGACCACTCAAGAAGACAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGGTGGATATTTGGCTGAGACCACTCAAGAAGACAGTGA  50

seq1  CCATCTTTGTTTTGCTGGACAGATGGTAGGCAGTTCACGCTCTGATAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTGTTTTGCTGGACAGATGGTAGGCAGTTCACGCTCTGATAGTC  100

seq1  GAGAAGCTTATTGTCATTTGATTTCAAATGTGGCTCTTCCATTCCCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTATTGTCATTTGATTTCAAATGTGGCTCTTCCATTCCCTGTC  150

seq1  ATTAACCCATTGTCACCTAGCGCCAGGATTTTAAACTATAAGGGGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCCATTGTCACCTAGCGCCAGGATTTTAAACTATAAGGGGCCACA  200

seq1  CTCTGAAATATTTGAAGGGTCACTACAGTCATCAAACACCTATTTCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATATTTGAAGGGTCACTACAGTCATCAAACACCTATTTCTGGT  250

seq1  GTTAGTGAAGCTAAGGCAGAGACTACAGGTCAATGACAGAGAACTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAAGCTAAGGCAGAGACTACAGGTCAATGACAGAGAACTGTTGA  300

seq1  ATGCCTCTATAAGCCTAGAGAAGCCAAATGCTGCAGGAATCCTGTCCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTATAAGCCTAGAGAAGCCAAATGCTGCAGGAATCCTGTCCACG  350

seq1  GCCCCCACCTTCCTCAATCACCGGTTTCACGGGCTGAGAAAACAACATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCTTCCTCAATCACCGGTTTCACGGGCTGAGAAAACAACATGG  400

seq1  GGAACGCACCTATCTGAGTCCAAAGATTTTTAACGGAACAAGACCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGCACCTATCTGAGTCCAAAGATTTTTAACGGAACAAGACCAAATC  450

seq1  TATCCTTAAACACTTTGTGTGGGTCACAAAGGCAGCTCACATGACCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAAACACTTTGTGTGGGTCACAAAGGCAGCTCACATGACCTCTG  500

seq1  CCTGTCTCAGTGACTGAGTCAGAACTCTGTAGGTTTCGGTCATTTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAGTGACTGAGTCAGAACTCTGTAGGTTTCGGTCATTTCACTT  550

seq1  TTAGTAGCCACACTTAAAATAATAAATGAGCCAGGTGAAGTTGATTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGCCACACTTAAAATAATAAATGAGCCAGGTGAAGTTGATTTCAC  600

seq1  CACGGTATTTAGCACTGCACATCTAAAATATAATGAGGTTGTGTGGTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTATTTAGCACTGCACATCTAAAATATAATGAGGTTGTGTGGTCGT  650

seq1  TATAAAGTTAACAGTGAGGTGTTTTGTTCCCTTTCTCTGTGATACTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTAACAGTGAGGTGTTTTGTTCCCTTTCTCTGTGATACTGTGC  700

seq1  TGGGACTCCAGTGTCTATTTGACATTTGGAATGCAACTCAGTTCTGAAT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGACTCCAGTGTCTATTTGACATTTGGAATGCAACTCAGTTCTGAATA  750

seq1  AACTACTTTCCAAATATTTGCTAGCCAGATGTGGTTATTGATTAGTTACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTCCAAATATTTGCTAGCCAGATGTGGTTATTGATTAGTTACC  800

seq1  ACAGTAGTCAAAGCGGTTCGATTCTATTCCTGAAAAC-TTCCCCATGC-A  847
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  ACAGTAGTCAAAGCGGTTCGATTCTATTCCTGAAAACTTTCCCCATGCAA  850

seq1  GGCTGGGGAGACGGCTCCATGGGT-AAAGCG-TTTGTTAGGCCGGCATGA  895
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GGCTGGGGAGACGGCTCCATGGGTAAAAGCGTTTTGTTAGGCCGGCATGA  900

seq1  GAACATGAATTCTATCCCTGAACTCAGGTAAAAAGGCAGGTTT--GGT-G  942
      |||||||||||||||||||||||||||||||||||||| ||||  ||| |
seq2  GAACATGAATTCTATCCCTGAACTCAGGTAAAAAGGCAAGTTTTGGGTGG  950

seq1  GTGTGAGCTTGAAAGAA-GGAAAGGGCCAG-AGGCTC-TCTGGGGCTC-A  988
      ||||||||||||||||| |||||||||||| |||||| |||||||||| |
seq2  GTGTGAGCTTGAAAGAAGGGAAAGGGCCAGAAGGCTCTTCTGGGGCTCAA  1000

seq1  CTT-GGCCAA-GCAGGCTAAT-CTAGTGGATGAGC-TCAAAGCCAG-TGA  1033
      ||| |||||| |||||||||| ||||| ||||||| |||||||||| |||
seq2  CTTGGGCCAAGGCAGGCTAATCCTAGT-GATGAGCTTCAAAGCCAGTTGA  1049

seq1  GAGAGCCTGGTCTG-AGAACAAACTGGACGGCTACTCAGTAACAGCACCC  1082
      |||||||||||||| |||||||||| |||||||||||| |||||||||| 
seq2  GAGAGCCTGGTCTGAAGAACAAACT-GACGGCTACTCAATAACAGCACCG  1098

seq1  GAGACTTCCTCTGGCATCCACACACACACC-ATGGGATGGAG-CCCTA-G  1129
       |||| ||||||| ||| ||| |||||||| ||||||||||| ||||| |
seq2  AAGAC-TCCTCTGTCAT-CACCCACACACCAATGGGATGGAGCCCCTAGG  1146

seq1  TTGGCTA  1136
      |||||||
seq2  TTGGCTA  1153