BAC Information

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BAC

Clone NameB6Ng01-254J16
Chromosome3 (Build37)
Map Location 118,703,228 - 118,828,968
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254J16.bB6Ng01-254J16.g
ACCGA061028GA061029
length1,1561,119
definitionB6Ng01-254J16.b B6Ng01-254J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,827,812 - 118,828,968)(118,703,228 - 118,704,351)
sequence
gaattcactaggcaactgccaggtctggattattgtgataaagtcaatat
agaggggaatgtggcagaatcactgggggcgaggggcacagtcataagag
gtgggtagttggtcaagggccctctgcattgtgacccaagagatgaacat
gtttcttcttctgaagaatggaattgggaggaaatttgcccttctgggaa
gagaaaagtgcatgtgagctctaagagaggatgagcttggaatgttcaaa
cgtccaaaaggatccccaaaacttcaagacaggacaagagtagtatgaat
aaaaatgagggaaacagccagtagctgtcactctagatgtttgacccccg
tgggagtttgctgtcccgtgggaggtcataaaaatattgtcgatgctgat
aaaatgatccagcttgcctctgtatgaaatcttcataaggaaacaagtaa
gggcaatagatggtgaaaataggaatttcattttgggtaggaacttgtga
tagccacataaatgcagagacattagatcctaattggctgctgagtattt
agattcaaggagacaaagataatataacattaagtatgattcctagacta
ctagcttgaactctgaatttgagaatataaattatatatgaacatgaaat
aaaggctagcaggaagatgagtgggaaaacttcaggttcagttttaatac
ggtccatgtgaggtgtttagtaagtatttcagtggggaagtcactgatgc
gtccttggtgtatttgttgataattcactaaaggggttaaggacaaagtt
ataaaacaaggagactgtaatataaaatagcatttatagtcagctggcaa
ggtgattggagactaaatagaataaattagataaataataaagggccaag
gcccaacctcaaaccacaagagaatatggcttcatgctggaagttatcca
aaatgtcaagtgggattcagtgtaatgaattctgttgagcggtaataaaa
cagtttcctagagattttaacattctatcctgcagtagcttcttagtgag
aaagtaaacaacttgtattaaggttcagaaagtttctgaaactgaacaga
attcttctaggttcccccttgcagagtgccacaataaagttgaagattca
tctcaa

gaattcaggattcactttgaatagctaaaatgcacttcattgtgcatctg
tactatgttttcttcatctgtgcatcacttgatgaccagtaaagaagttt
ccatttttgagtcactgtgcctagtgcaacaattaacatgggagtataga
ttgttgacatactcattttatttcatttgaatacatatctcatggggtgg
tgcctgataatatgagagtttctatttttattctttgttttgacattatt
atttggtaaaagaatgtgtggaattagtggctaaaaggagtatcattatt
taaatcagccttatccttgggcaaaggaaataacaaagaacaaacacgcc
ccattaagctcattttctcccactttcttcttttactgggatcgatagct
gacattattatcctaaaagtattacagctgtcttcgactgacagttttac
aagaggttgggtaaaggtggctcaggaatccagaaaatcttcagaagtta
gaaaaatcagagcaaggaaaaactatttcttaaggattgtcatacttaaa
cagaaaaatatatgtgaacaccgagaaaatctcttactagacaaataaaa
aaaaaaccctcgtactaaacaaaatactaaattaaattgaatagtctaga
ttcagattttaaaatattatggagagttgggttcagtcttgaagaatatt
aatattgtatttgtctttgtttctcttcatcctttaagaattatggaggc
tatgatcaaatgtttaatctgttgattttaaaagtctctagagcatttag
tgatatattagttgtgctatgtaaaatacatacatgtaaagagtaatagg
tatttaattggatgtaagtgaagaattaatggtagtggaagatgagtggc
ttgggcttgctgctggcttcccaaaactgaattctgagccatcagagcca
ggttgtttcttgtgtgctgatgtgcattccttcacaactgtgtcattcag
gcacacagaaactgcttaattttattagatcactgcagaacaaatttaga
aagcttacttcttctaattgcaaatctgaatatatccgataccagtctga
tgtcttgcgcatagaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118827812_118828968
seq2: B6Ng01-254J16.b_46_1201 (reverse)

seq1  TTGAGATGGAATC-TCAACTTTTATTGT-GCACTCTGGCAGGGGGAAACC  48
      ||||||| ||||| ||||| |||||||| ||||||| ||| |||| ||||
seq2  TTGAGAT-GAATCTTCAAC-TTTATTGTGGCACTCT-GCAAGGGGGAACC  47

seq1  TAG-AGAA-TCTGGTCAGTTTCAGGAACTTCCTGAACC-TAATACAAGTT  95
      ||| |||| |||| |||||||||| ||||| ||||||| |||||||||||
seq2  TAGAAGAATTCTGTTCAGTTTCAGAAACTTTCTGAACCTTAATACAAGTT  97

seq1  GTTTACTTTCTCACTTAAGAAGCTACCCTGCAGGATAGAATGTTAAAATC  145
      |||||||||||||| ||||||||||  |||||||||||||||||||||||
seq2  GTTTACTTTCTCAC-TAAGAAGCTA--CTGCAGGATAGAATGTTAAAATC  144

seq1  TCTAGGAAACTGTTTTATAACCGCTCAACAGAATTCATTACACTGAATCC  195
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTAGGAAACTGTTTTATTACCGCTCAACAGAATTCATTACACTGAATCC  194

seq1  CACCTGACATTTTGGATAACTTCCAGCATGAAGCCATATTCTCTTGTGGT  245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACATTTTGGATAACTTCCAGCATGAAGCCATATTCTCTTGTGGT  244

seq1  TTGAGGTTGGGCCTTGGCCCTTTATTATTTATCTAATTTATTCTATTTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTGGGCCTTGGCCCTTTATTATTTATCTAATTTATTCTATTTAG  294

seq1  TCTCCAATCACCTTGCCAGCTGACTATAAATGCTATTTTATATTACAGTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATCACCTTGCCAGCTGACTATAAATGCTATTTTATATTACAGTC  344

seq1  TCCTTGTTTTATAACTTTGTCCTTAACCCCTTTAGTGAATTATCAACAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTTATAACTTTGTCCTTAACCCCTTTAGTGAATTATCAACAAA  394

seq1  TACACCAAGGACGCATCAGTGACTTCCCCACTGAAATACTTACTAAACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAAGGACGCATCAGTGACTTCCCCACTGAAATACTTACTAAACAC  444

seq1  CTCACATGGACCGTATTAAAACTGAACCTGAAGTTTTCCCACTCATCTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGGACCGTATTAAAACTGAACCTGAAGTTTTCCCACTCATCTTC  494

seq1  CTGCTAGCCTTTATTTCATGTTCATATATAATTTATATTCTCAAATTCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCCTTTATTTCATGTTCATATATAATTTATATTCTCAAATTCAG  544

seq1  AGTTCAAGCTAGTAGTCTAGGAATCATACTTAATGTTATATTATCTTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGCTAGTAGTCTAGGAATCATACTTAATGTTATATTATCTTTGT  594

seq1  CTCCTTGAATCTAAATACTCAGCAGCCAATTAGGATCTAATGTCTCTGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAATCTAAATACTCAGCAGCCAATTAGGATCTAATGTCTCTGCA  644

seq1  TTTATGTGGCTATCACAAGTTCCTACCCAAAATGAAATTCCTATTTTCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGGCTATCACAAGTTCCTACCCAAAATGAAATTCCTATTTTCAC  694

seq1  CATCTATTGCCCTTACTTGTTTCCTTATGAAGATTTCATACAGAGGCAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTGCCCTTACTTGTTTCCTTATGAAGATTTCATACAGAGGCAAG  744

seq1  CTGGATCATTTTATCAGCATCGACAATATTTTTATGACCTCCCACGGGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCATTTTATCAGCATCGACAATATTTTTATGACCTCCCACGGGAC  794

seq1  AGCAAACTCCCACGGGGGTCAAACATCTAGAGTGACAGCTACTGGCTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCCCACGGGGGTCAAACATCTAGAGTGACAGCTACTGGCTGTT  844

seq1  TCCCTCATTTTTATTCATACTACTCTTGTCCTGTCTTGAAGTTTTGGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATTTTTATTCATACTACTCTTGTCCTGTCTTGAAGTTTTGGGGA  894

seq1  TCCTTTTGGACGTTTGAACATTCCAAGCTCATCCTCTCTTAGAGCTCACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGGACGTTTGAACATTCCAAGCTCATCCTCTCTTAGAGCTCACA  944

seq1  TGCACTTTTCTCTTCCCAGAAGGGCAAATTTCCTCCCAATTCCATTCTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTTCTCTTCCCAGAAGGGCAAATTTCCTCCCAATTCCATTCTTC  994

seq1  AGAAGAAGAAACATGTTCATCTCTTGGGTCACAATGCAGAGGGCCCTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAACATGTTCATCTCTTGGGTCACAATGCAGAGGGCCCTTGA  1044

seq1  CCAACTACCCACCTCTTATGACTGTGCCCCTCGCCCCCAGTGATTCTGCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACCCACCTCTTATGACTGTGCCCCTCGCCCCCAGTGATTCTGCC  1094

seq1  ACATTCCCCTCTATATTGACTTTATCACAATAATCCAGACCTGGCAGTTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCCTCTATATTGACTTTATCACAATAATCCAGACCTGGCAGTTG  1144

seq1  CCTAGTGAATTC  1157
      ||||||||||||
seq2  CCTAGTGAATTC  1156


seq1: chr3_118703228_118704351
seq2: B6Ng01-254J16.g_66_1184

seq1  GAATTCAGGATTCACTTTGAATAGCTAAAATGCACTTCATTGTGCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTCACTTTGAATAGCTAAAATGCACTTCATTGTGCATCTG  50

seq1  TACTATGTTTTCTTCATCTGTGCATCACTTGATGACCAGTAAAGAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTTTCTTCATCTGTGCATCACTTGATGACCAGTAAAGAAGTTT  100

seq1  CCATTTTTGAGTCACTGTGCCTAGTGCAACAATTAACATGGGAGTATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGAGTCACTGTGCCTAGTGCAACAATTAACATGGGAGTATAGA  150

seq1  TTGTTGACATACTCATTTTATTTCATTTGAATACATATCTCATGGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACATACTCATTTTATTTCATTTGAATACATATCTCATGGGGTGG  200

seq1  TGCCTGATAATATGAGAGTTTCTATTTTTATTCTTTGTTTTGACATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATAATATGAGAGTTTCTATTTTTATTCTTTGTTTTGACATTATT  250

seq1  ATTTGGTAAAAGAATGTGTGGAATTAGTGGCTAAAAGGAGTATCATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAAAAGAATGTGTGGAATTAGTGGCTAAAAGGAGTATCATTATT  300

seq1  TAAATCAGCCTTATCCTTGGGCAAAGGAAATAACAAAGAACAAACACGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGCCTTATCCTTGGGCAAAGGAAATAACAAAGAACAAACACGCC  350

seq1  CCATTAAGCTCATTTTCTCCCACTTTCTTCTTTTACTGGGATCGATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGCTCATTTTCTCCCACTTTCTTCTTTTACTGGGATCGATAGCT  400

seq1  GACATTATTATCCTAAAAGTATTACAGCTGTCTTCGACTGACAGTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTATCCTAAAAGTATTACAGCTGTCTTCGACTGACAGTTTTAC  450

seq1  AAGAGGTTGGGTAAAGGTGGCTCAGGAATCCAGAAAATCTTCAGAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGGGTAAAGGTGGCTCAGGAATCCAGAAAATCTTCAGAAGTTA  500

seq1  GAAAAATCAGAGCAAGGAAAAACTATTTCTTAAGGATTGTCATACTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCAGAGCAAGGAAAAACTATTTCTTAAGGATTGTCATACTTAAA  550

seq1  CAGAAAAATATATGTGAACACCGAGAAAATCTCTTACTAGACAAATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATATATGTGAACACCGAGAAAATCTCTTACTAGACAAATAAAA  600

seq1  AAAAAACCCTCGTACTAAACAAAATACTAAATTAAATTGAATAGTCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCTCGTACTAAACAAAATACTAAATTAAATTGAATAGTCTAGA  650

seq1  TTCAGATTTTAAAATATTATGGAGAGTTGGGTTCAGTCTTGAAGAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTTAAAATATTATGGAGAGTTGGGTTCAGTCTTGAAGAATATT  700

seq1  AATATTGTATTTGTCTTTGTTTCTCTTCATCCTTTAAGAATTATGGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTATTTGTCTTTGTTTCTCTTCATCCTTTAAGAATTATGGAGGC  750

seq1  TATGATCAAATGTTTAATCTGTTGATTTTAAAAGTCTCTAGAGCATTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAAATGTTTAATCTGTTGATTTTAAAAGTCTCTAGAGCATTTAG  800

seq1  TGATATATTAGTTGTGCTATGTAAAATACATACATGTAAAGAGTAATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATTAGTTGTGCTATGTAAAATACATACATGTAAAGAGTAATAGG  850

seq1  TATTTAATTGGATGTAAGTGAAGAATTAATGGTAGTGGAAGATGAGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTGGATGTAAGTGAAGAATTAATGGTAGTGGAAGATGAGTGGC  900

seq1  TTGGGCTTGCTGCTGGCTTCCCAAAACTGAATTCTGAGCCATCAGAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTGCTGCTGGCTTCCCAAAACTGAATTCTGAGCCATCAGAGCCA  950

seq1  GGGTTGTTTCCTGTGTTGCTGATGTGCATTCCTTCACAACCTGTGTCATT  1000
       ||||||||| |||| ||||||||||||||||||||||| ||||||||||
seq2  -GGTTGTTTCTTGTG-TGCTGATGTGCATTCCTTCACAA-CTGTGTCATT  997

seq1  CAGGCACACAGAAACTGCTTAATTTATTAAGATCACCTGCAGAAACAAAT  1050
      |||||||||||||||||||||||||  | |||||| |||||| |||||||
seq2  CAGGCACACAGAAACTGCTTAATTTTATTAGATCA-CTGCAG-AACAAAT  1045

seq1  TTAG-AAGCTTACTTCCTTCTAAATTTGC-AATTTGAATATAATCTATA-  1097
      |||| |||||||||| |||||||  |||| ||| ||||||||  | ||| 
seq2  TTAGAAAGCTTACTT-CTTCTAA--TTGCAAATCTGAATATATCCGATAC  1092

seq1  CATTCTGATGTC-TGCGCTAAGGAACAA  1124
      || ||||||||| ||||| |  ||||||
seq2  CAGTCTGATGTCTTGCGC-ATAGAACAA  1119


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