BAC Information

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BAC

Clone NameB6Ng01-255D22
Chromosome3 (Build37)
Map Location 80,277,209 - 80,278,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255D22.bB6Ng01-255D22.g
ACCGA061499GA061500
length1,092770
definitionB6Ng01-255D22.b B6Ng01-255D22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaaaaacaattatggttttctctgttacttgaatttgaactt
tcttctataactagctcccatttccattttcaaatgaattggagggaaaa
aaaaaaagaagtcagtaaggtattcgaaaggtttcctccttctgtttatt
cataacctggtttgaaaagtcctattgtcttctatctatttgctgttggc
cactgctccttcgagcatctgcctctggatgaattgagaggaataatatt
aaagataggtaaattccagtatactacttatgtaaatcccaacagcaggg
tcttcagacaggcactattttccctgaagggggactaacagcaagggtca
tcataaaagatcaacaagcatttaccagagtaagacactcctgtttctgt
taaaatcatgaataaatgtatttttatcaaaagcacaatgagctctgagc
tggcctctgcctcttactgagagcatgagctcactggctaggagcagagc
cctggctgtctgttatgatgacctttcaaagattgatcataactgttcag
agctgaaatttccactcatgtgcagtcacttcttccccaatgggaaaagt
gattcaaggtcttagagaatgtcaaggccatttatttccaactcttctat
ccagtgtcacttttccagtatgtgcctatgtatgataatgtttggtttta
ttgatgaacaacagaaagatagtaacagtaattaatgaaacagaataact
tttaaaatatgatgtgataagagttgtgtcaaagttctttcatacaatat
cttactgtgtggtacccacccctcctttgtagtatcaatgagacaaatgc
tccagtaattacatgatgagattaggaagcctcataaatagccattaaat
taaccacagccactatatagagatacttgaaaataagattaatgatatag
caatatggatctgataatcaagacaaatgaggactggtaaatggacagct
gccatatacatggtggatgagctgaataaaagggaaattcacaataacat
gtgtgatgaaacagatgtaaaattttccactctgcatctaga
gaattcatatgtgtgccagcttgttattaatagaggaatctcaaatggct
gagaaaagtttaaagaaatgttaatatccttagccagcagggaaatgcaa
atcaaaaccactttgagattccctcctacacctgtcagagtagttaagat
caataatataagtgacagctcatgctggggaggatgtagagcaaggggac
cacttctccattgctggtgggagtgcaaacatgtcatgccactttggaaa
tcgatatagctcttcctcagaaaattgggaattgatctacctctgaaacc
aactatactactcctgggcatatacctaaaggatgatccatcttacaaca
aataagttcacagtggcttactcataatagccagaatctgaaaataccct
agatattgttcaactgaaaaatggataaagaaaatgtggtgtgtttacac
aatggaatattactcagcagtttaaaaaaatgacatcatgaaatttgtca
aaaaatgcatagacctagaaaaaaatcgtaccaattgagggtaacccaga
cctagaaagacaaacatggtatatagtcagttaagtagacatcacctgtt
aaataaatgataaccaagccatgattcacagacccagagaagctaagaaa
caaggaagagcctaggtgagatatatgaaacctccataagaaggagatct
agattagaatagattgtgtgggtgggctggaaacgggcagggatggaata
ggacaggtgtgtggtgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80277209_80278302
seq2: B6Ng01-255D22.b_44_1135 (reverse)

seq1  TCTAGATGGCAGAGTGGAAAATTTTTACATTCTGTTTCATCACACATGTT  50
      ||||||| ||||||||||||| ||||||| ||||||||||||||||||||
seq2  TCTAGAT-GCAGAGTGGAAAA-TTTTACA-TCTGTTTCATCACACATGTT  47

seq1  A-TGTGAATTTCCCTTTTATTCAGCTCATCCA-CATGTTATATGGCAGCT  98
      | |||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  ATTGTGAATTTCCCTTTTATTCAGCTCATCCACCATG-TATATGGCAGCT  96

seq1  GTCCATTTACCAGTCCTCATTTGTCTTGATTATCAGATCCATATTGCTAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTACCAGTCCTCATTTGTCTTGATTATCAGATCCATATTGCTAT  146

seq1  ATCATTAATCTTATTTTCAAGTATCTCTATATAGTGGCTGTGGTTAATTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAATCTTATTTTCAAGTATCTCTATATAGTGGCTGTGGTTAATTT  196

seq1  AATGGCTATTTATGAGGCTTCCTAATCTCATCATGTAATTACTGGAGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATTTATGAGGCTTCCTAATCTCATCATGTAATTACTGGAGCAT  246

seq1  TTGTCTCATTGATACTACAAAGGAGGGGTGGGTACCACACAGTAAGATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCATTGATACTACAAAGGAGGGGTGGGTACCACACAGTAAGATAT  296

seq1  TGTATGAAAGAACTTTGACACAACTCTTATCACATCATATTTTAAAAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAAGAACTTTGACACAACTCTTATCACATCATATTTTAAAAGTT  346

seq1  ATTCTGTTTCATTAATTACTGTTACTATCTTTCTGTTGTTCATCAATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCATTAATTACTGTTACTATCTTTCTGTTGTTCATCAATAAA  396

seq1  ACCAAACATTATCATACATAGGCACATACTGGAAAAGTGACACTGGATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATTATCATACATAGGCACATACTGGAAAAGTGACACTGGATAG  446

seq1  AAGAGTTGGAAATAAATGGCCTTGACATTCTCTAAGACCTTGAATCACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGAAATAAATGGCCTTGACATTCTCTAAGACCTTGAATCACTT  496

seq1  TTCCCATTGGGGAAGAAGTGACTGCACATGAGTGGAAATTTCAGCTCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGGGGAAGAAGTGACTGCACATGAGTGGAAATTTCAGCTCTGA  546

seq1  ACAGTTATGATCAATCTTTGAAAGGTCATCATAACAGACAGCCAGGGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATGATCAATCTTTGAAAGGTCATCATAACAGACAGCCAGGGCTC  596

seq1  TGCTCCTAGCCAGTGAGCTCATGCTCTCAGTAAGAGGCAGAGGCCAGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAGCCAGTGAGCTCATGCTCTCAGTAAGAGGCAGAGGCCAGCTC  646

seq1  AGAGCTCATTGTGCTTTTGATAAAAATACATTTATTCATGATTTTAACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCATTGTGCTTTTGATAAAAATACATTTATTCATGATTTTAACAG  696

seq1  AAACAGGAGTGTCTTACTCTGGTAAATGCTTGTTGATCTTTTATGATGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAGTGTCTTACTCTGGTAAATGCTTGTTGATCTTTTATGATGAC  746

seq1  CCTTGCTGTTAGTCCCCCTTCAGGGAAAATAGTGCCTGTCTGAAGACCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTTAGTCCCCCTTCAGGGAAAATAGTGCCTGTCTGAAGACCCT  796

seq1  GCTGTTGGGATTTACATAAGTAGTATACTGGAATTTACCTATCTTTAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGGATTTACATAAGTAGTATACTGGAATTTACCTATCTTTAATA  846

seq1  TTATTCCTCTCAATTCATCCAGAGGCAGATGCTCGAAGGAGCAGTGGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTCTCAATTCATCCAGAGGCAGATGCTCGAAGGAGCAGTGGCCA  896

seq1  ACAGCAAATAGATAGAAGACAATAGGACTTTTCAAACCAGGTTATGAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATAGATAGAAGACAATAGGACTTTTCAAACCAGGTTATGAATA  946

seq1  AACAGAAGGAGGAAACCTTTCGAATACCTTACTGACTTCTTTTTTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGAGGAAACCTTTCGAATACCTTACTGACTTCTTTTTTTTTTT  996

seq1  CCCTCCAATTCATTTGAAAATGGAAATGGGAGCTAGTTATAGAAGAAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAATTCATTTGAAAATGGAAATGGGAGCTAGTTATAGAAGAAAGT  1046

seq1  TCAAATTCAAGTAACAGAGAAAACCATAATTGTTTTTGTGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAAGTAACAGAGAAAACCATAATTGTTTTTGTGGAATTC  1092