MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-255F07
Chromosome	3 (Build37)
Map Location	85,865,450 - 86,013,882
singlet/doublet	doublet
Overlap gene	Sh3d19, Rps3a, LOC634201
Upstream gene	LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream gene	Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042237 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100042125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pet112l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229487 MGI:2442496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930021J17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glt28d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320302 MGI:2443773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042265 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 4 Proteins

name	Gm1019 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3d19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27059 MGI:1350923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20091 MGI:1202063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634201 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Lrba (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Mab21l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23937 MGI:1346022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667024 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667024 MGI:3645910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042319 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 742 ESTs

name	Dclk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70762 MGI:1918012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625055 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625055 MGI:3646785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 473 ESTs

name	Cd1d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12480 MGI:107675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd1d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12479 MGI:107674
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667897 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667897
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Kirrel1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170643 MGI:1891396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042355 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 329 ESTs, 7 Proteins

name	LOC100042237 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251245 GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042237 transcript_id : XM_001477542.1

name	LOC100042125 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251240 GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042125 transcript_id : XM_001477612.1

name	Pet112l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385128 GeneID:229487 MGI:2442496
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PET112-like (yeast) transcript_id : NM_144896.3

name	9930021J17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802502 GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9930021J17 gene transcript_id : NM_172682.2

name	Glt28d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802888 GeneID:320302 MGI:2443773
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycosyltransferase 28 domain containing 2 transcript_id : NM_177130.2

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251249 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to hypoxia induced gene 1, transcript variant 1 transcript_id : XM_001477636.1

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251251 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 3 Proteins product : similar to hypoxia induced gene 1, transcript variant 2 transcript_id : XM_001477646.1

name	Gm1019 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:48717491 GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1019, (NCBI) transcript_id : NM_001001650.1

name	Sh3d19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126723607 GeneID:27059 MGI:1350923
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain protein D19 transcript_id : NM_001082414.1

name	Rps3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802659 GeneID:20091 MGI:1202063
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S3a transcript_id : NM_016959.3

name	LOC634201 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251242 GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC634201 transcript_id : XM_001477638.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956398 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_030695.2

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956396 GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077688.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956394 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077687.1

name	Mab21l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801523 GeneID:23937 MGI:1346022
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mab-21-like 2 (C. elegans) transcript_id : NM_011839.3

name	EG667024 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369608 GeneID:667024 MGI:3645910
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667024 transcript_id : XM_994645.1

name	LOC100042319 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251257 GeneID:100042319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 742 ESTs product : hypothetical protein LOC100042319 transcript_id : XM_001477737.1

name	Dclk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254280 GeneID:70762 MGI:1918012
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : doublecortin-like kinase 2 transcript_id : NM_027539.3

name	EG625055 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369611 GeneID:625055 MGI:3646785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 473 ESTs product : predicted gene, EG625055, transcript variant 3 transcript_id : XM_899463.2

name	Cd1d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110665732 GeneID:12480 MGI:107675
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD1d2 antigen transcript_id : NM_007640.2

name	Cd1d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227231 GeneID:12479 MGI:107674
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD1d1 antigen transcript_id : NM_007639.2

name	Kirrel1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608145 GeneID:170643 MGI:1891396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kin of IRRE like 1 (Drosophila) transcript_id : NM_130867.2

name	LOC100042355 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251262 GeneID:100042355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 295 ESTs, 7 Proteins product : similar to ubiquitin-conjugating enzyme UbcH7, transcript variant 2 transcript_id : XM_001477899.1

name	LOC100042355 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251260 GeneID:100042355
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 328 ESTs, 7 Proteins product : similar to ubiquitin-conjugating enzyme UbcH7, transcript variant 1 transcript_id : XM_001477887.1

name	LOC100042237 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251246 GeneID:100042237
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477592.1

name	LOC100042125 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251241 GeneID:100042125
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477662.1

name	Pet112l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450279 CCDS:CCDS17441.1 GeneID:229487 MGI:2442496
definition	GO_function : GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : PET112-like protein_id : NP_659145.1

name	9930021J17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542059 CCDS:CCDS17442.1 GeneID:229488 MGI:2444746
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC229488 protein_id : NP_766270.1

name	Glt28d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893089 CCDS:CCDS17443.1 GeneID:320302 MGI:2443773
definition	GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 28 domain containing 1-like protein_id : NP_796104.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251250 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 1 protein_id : XP_001477686.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251252 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 2 protein_id : XP_001477696.1

name	Gm1019 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:48717492 CCDS:CCDS17444.1 GeneID:368202 MGI:2685865
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 function : serine protease product : epidermis-specific serine protease-like protein_id : NP_001001650.1

name	Sh3d19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126723608 GeneID:27059 MGI:1350923
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : SH3 domain containing protein D 19 product : SH3 domain protein D19 protein_id : NP_001075883.1

name	Rps3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980669 CCDS:CCDS17446.1 GeneID:20091 MGI:1202063
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] [Evidence NAS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence ISS] [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006413 - translational initiation [Evidence ISS] codon_start : 1 exception : mismatches in translation product : ribosomal protein S3a protein_id : NP_058655.2

name	LOC634201 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251243 GeneID:634201
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477688.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956399 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform alpha is encoded by transcript variant 1 product : LPS-responsive beige-like anchor isoform alpha protein_id : NP_109620.2

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956397 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform beta is encoded by transcript variant 2 product : LPS-responsive beige-like anchor isoform beta protein_id : NP_001071156.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956395 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform gamma is encoded by transcript variant 3 product : LPS-responsive beige-like anchor isoform gamma protein_id : NP_001071155.1

name	Mab21l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560522 CCDS:CCDS17447.1 GeneID:23937 MGI:1346022
definition	GO_process : GO:0010172 - embryonic body morphogenesis [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] codon_start : 1 product : mab-21-like 2 protein_id : NP_035969.2

name	EG667024 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369609 GeneID:667024 MGI:3645910
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999739.1

name	LOC100042319 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251258 GeneID:100042319
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477787.1

name	Dclk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254281 CCDS:CCDS17448.1 GeneID:70762 MGI:1918012
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : doublecortin and CaM kinase-like 2 product : doublecortin-like kinase 2 protein_id : NP_081815.3

name	EG625055 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82890069 GeneID:625055 MGI:3646785
definition	codon_start : 1 product : similar to hCG2016250, isoform 3 protein_id : XP_904556.1

name	Cd1d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110665733 GeneID:12480 MGI:107675
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003823 - antigen binding [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0048006 - antigen processing and presentation, endogenous lipid antigen via MHC class Ib [Evidence ISS]; GO:0016045 - detection of bacterium [Evidence ISS]; GO:0045089 - positive regulation of innate immune response [Evidence ISS]; GO:0045086 - positive regulation of interleukin-2 biosynthesis [Evidence IDA]; GO:0045404 - positive regulation of interleukin-4 biosynthesis [Evidence IDA]; GO:0051135 - positive regulation of NK T cell activation [Evidence IDA]; GO:0001916 - positive regulation of T cell mediated cytotoxicity [Evidence IDA]; GO:0045058 - T cell selection [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : T-cell surface glycoprotein CD1d2 product : CD1d2 antigen protein_id : NP_031666.2

name	Cd1d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671706 CCDS:CCDS17449.1 GeneID:12479 MGI:107674
definition	GO_component : GO:0005769 - early endosome [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0005770 - late endosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003823 - antigen binding [Evidence IEA]; GO:0030883 - endogenous lipid antigen binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA] [Evidence ISS] GO_process : GO:0019882 - antigen processing and presentation [Evidence IDA]; GO:0048006 - antigen processing and presentation, endogenous lipid antigen via MHC class Ib [Evidence ISS]; GO:0048007 - antigen processing and presentation, exogenous lipid antigen via MHC class Ib [Evidence IDA]; GO:0016045 - detection of bacterium [Evidence ISS]; GO:0045089 - positive regulation of innate immune response [Evidence ISS]; GO:0045078 - positive regulation of interferon-gamma biosynthesis [Evidence IMP]; GO:0045086 - positive regulation of interleukin-2 biosynthesis [Evidence IDA]; GO:0045404 - positive regulation of interleukin-4 biosynthesis [Evidence IMP] [Evidence IDA]; GO:0051135 - positive regulation of NK T cell activation [Evidence IDA]; GO:0051138 - positive regulation of NK T cell differentiation [Evidence IMP]; GO:0001916 - positive regulation of T cell mediated cytotoxicity [Evidence IDA]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0050776 - regulation of immune response [Evidence IMP]; GO:0045058 - T cell selection [Evidence ISS] codon_start : 1 exception : mismatches in translation product : CD1d1 antigen protein_id : NP_031665.1

name	Kirrel1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608146 CCDS:CCDS17450.1 GeneID:170643 MGI:1891396
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0007588 - excretion [Evidence IMP] codon_start : 1 note : nephrin 1 product : X kin of IRRE like 1 protein_id : NP_570937.2

name	LOC100042355 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251261 GeneID:100042355
definition	codon_start : 1 product : similar to ubiquitin-conjugating enzyme UbcH7 isoform 1 protein_id : XP_001477937.1

name	LOC100042355 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251263 GeneID:100042355
definition	codon_start : 1 product : similar to ubiquitin-conjugating enzyme UbcH7 isoform 2 protein_id : XP_001477949.1

name	LOC667897 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667897
definition	number : 1 pseudo : _no_value

clone name	MSMg01-236F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-355B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-275P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453H02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-480C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468P09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-306J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435G22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337J22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-060B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-255F07.b	B6Ng01-255F07.g
ACC	GA061562	GA061563
length	1,146	1,149
definition	B6Ng01-255F07.b	B6Ng01-255F07.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(86,012,730 - 86,013,882)	(85,865,450 - 85,866,598)
sequence	gaattccatcccacctcgtgcaacatactcatcaccctaagacccttcac gggacctcatcatctgctcctacacagaatgctcttgatttccatcccat cctttgtccctttatcagtaattattctgacttcttttgtagtaagctga gttctcaattatgtcctggtgacttttaatcagtgaaaatatttcaaggc ctacatgggagctcatgaaaacaaaagcttggtcagcagtgtttcagatc acattggcgaggtctggctggagagagagatggctcagcacttaagagta ctgattcttcttctagagggcctggttaagttctcaccactcacaaggcc aatatatatcacgtgaacatcttcctcaccttatcctgtccaccctccct aaacaaacaacctattctatggcttgttagctgtctgctgtgatctcttt ctactaggttcagtgtggcgtagaaaatgaaggtactttatttacctggc cttcatttctgtttacagaatttctttggagcctttttgcaaagctccgt tccatccactcccactgttgcacctgctgatccgattctaaccatcaacc aatgagcaggaaggtctgaagccaatttctgatgggagaagtgggagggg cactcatcaaactggtttgactaccccaagactgattaccctagttttaa caagaaaaagaaaaaacttacaaaataacaggattctggacttcccaaat ctcaaactggattttggagcactgaccaactatatgtttcacccctttaa aatgtatgtattacactattgtagtgggagaggtgggtgccatgatattc gtgtacttgcaaggggataacttgcaagagtgagttctgtccctctactg tgtatatccctgggatcacagttaggtcattagacctttgcatgggcctt tagccaatgagtcaactgatttgtctttatgtttttgtttgagacaggtt cgggctggccttgacttcactatgtagcagaggataaccttaacttctga gtctagattacaggtggtgcaagaaactgcttgtacagctgaagatcaac cagggcttgagcatactaaacctagcacttttactgagttgagcta	gaattcctgtacaatggtatattgaaggtggaattcacttatattcaaaa ataattactcacttgtgaggcagaggcaggagaatctctctgagtttgag gccgtcctggtctatataacagtaccaggccagccaagaatacatagtga acccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaa tgaggtaattcatactaattattaagacatgtgaaatttaatttttttaa aaaaactccataataattttgttgtggctgaattatctaaaatgctactg agaattggcaatcttagcctactgaccttttcttcatttcactaatactt ccttttttgtagctcacagacccagatatatatacctttacctgagtttg agtggtgagcctgcaagtgggttggcttgacccactccccaagatggttc tgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcc tgaggaacaactttgtcagtcagctttaaacattcttgttacatttattt gtggagagggcatatgctacacctggccggagtctcgtctctccttctac catgtaggtcctagggatggctcttaggtcccccggctcggcacatgctc catccactgcactgtctccatggccccatcactcagcctgcagtgagccg gtgtcctcaccttttttagtacttcctgtgaggctgctatcactgctggc cttcctgtcatggaggtcccacccaattttcttcagatcctggctttctt gagtcatggcttgtgtgagtaatgtcaactttagagtaaagcttaggttc tcaccccaccatctacagttgcagttcaccatgcgattgcccccaccaca cacttctcttcctgagaagaggagaacccagtgtcttctgacatgattct gtgcagacaggaacagccataaatctaggggaaagttttggccttggttt cagtggggtccctcctctgtagcagatgcccagtgttaccacagttagct gtcatctcatcacagcagtaataaacatggacctaggatgaaatatcttc ttatcaaatatttcagtgcatctaggccaagataaaataggcctgaatc
quality values	Open. Hide. 52 41 27 35 62 62 31 12 62 62 62 33 25 62 62 62 62 62 62 62 47 56 62 51 59 62 62 62 62 59 59 62 59 59 62 62 51 46 34 28 28 54 59 62 62 49 62 59 62 62 62 62 62 59 59 62 62 59 62 62 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 54 59 59 62 59 62 62 56 56 62 54 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 49 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 48 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 54 58 58 58 51 58 58 58 52 58 58 54 58 58 54 41 58 58 58 58 58 58 58 47 58 58 58 42 51 52 58 58 51 58 58 52 54 53 46 51 58 58 58 54 58 53 58 51 58 58 49 39 51 58 54 53 53 58 58 58 45 29 58 58 58 50 48 44 54 58 53 58 58 46 58 58 54 53 58 44 41 58 54 58 41 33 49 50 51 43 49 28 31 58 50 51 29 49 58 39 47 38 40 50 58 58 52 53 42 53 58 58 34 50 50 50 50 51 42 58 58 49 58 58 37 53 58 58 58 58 50 41 51 50 41 52 30 49 58 50 41 41 34 52 45 29 54 37 25 54 53 45 51 54 47 27 52 42 41 46 49 26 54 47 42 45 52 42 52 54 47 38 44 42 54 35 32 54 54 49 53 32 51 29 53 37 37 52 35 30 40 40 29 45 45 39 39 41 40 47 47 34 54 32 42 32 44 54 54 54 53 54 33 40 54 54 33 37 53 35 40 36 35 34 34 34 31 35 34 31 41 41 37 42 28 46 28 53 34 40 46 53 52 33 27 47 11 47 33 39 53 41 32 42 32 29 30 32 34 29 23 31 28 34 31 31 31 51 36 31 31 18 31 31 20 15 33 20 51 46 36 30 19 17 25 32 37 38 31 31 21 26 31 46 14 38 31 31 19 36 38 34 31 32 31 31 46 33 31 36 33 28 31 29 31 24 31 26 26 28 31 42 27 48 33 24 31 48 23 31 26 21 23 32 22 25 15 22 21 21 37 31 22 31 33 38 36 22 31 18 32 38 48 31 24 29 32 31 31 48 30 21 30 31 48 24 31 19 42 32 31 13 31 32 31 23 19 31 33 37 31 31 27 31 48 48 48 33 17 19 26 43 18 27 34 32 32 44 44 44 31 20 12 41 16 25 24 9 32 15 8 15 12 19 23 21 19 43 17 29 14 14 33 10 18 32 31 6 7 5 5 4 6 13 20 20 22 24 33 26 32 15 15 28 13 34 11 14 32 19 9 18 16 19 15 13 25 9 12 25 18 13 8 13 23 7 8 17 27 14 30 8 15 27 10 11 16 23 26 7 19 11 8 30 12 9 7 15 3 32 13 20 3 6 28 27 13 13 6 13 11 3 3 5 23 9 21 9 7 28 20 20 24 22 22 22 7 10 17 15 9 5 8 7 9 13 8 7 13 5 9 13 16 22 10 6 8 6 9 9 8 8 13 10 6 4 3 5 5 4 6 7 5 5 8 11 7 3 3 7 12	Open. Hide. 62 47 51 59 62 62 62 62 62 59 59 59 43 46 38 49 33 50 59 62 62 59 62 54 54 62 62 54 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 59 51 59 54 54 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 54 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 58 58 58 58 58 58 58 58 58 58 58 58 52 54 52 58 58 58 58 58 58 58 58 54 58 58 58 49 58 54 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 58 54 31 58 54 58 58 58 58 58 58 54 54 54 58 58 58 54 54 42 49 49 50 58 58 58 58 58 58 51 58 58 49 58 32 58 58 41 38 58 46 39 58 54 58 50 51 26 58 52 51 58 58 58 47 46 58 46 58 49 39 58 50 41 52 52 58 58 58 51 49 49 39 52 51 28 28 51 50 58 50 48 44 49 58 50 58 48 50 58 35 52 54 54 49 43 39 43 33 51 53 41 47 53 50 52 37 51 50 50 49 39 53 41 50 58 51 41 49 52 39 58 32 53 39 42 53 45 52 40 39 49 51 54 54 54 54 35 37 39 42 31 39 54 53 32 53 40 54 43 53 40 19 38 24 53 52 40 49 37 52 45 32 37 30 35 39 34 49 50 18 46 34 38 38 52 39 54 39 52 28 27 21 31 53 22 51 29 31 54 54 40 42 54 20 16 41 42 54 54 52 52 42 53 43 32 18 52 31 26 32 32 47 32 40 53 53 45 34 35 41 34 32 25 45 34 33 32 51 45 32 32 45 37 22 45 32 28 52 28 30 14 33 27 42 28 36 35 31 33 43 51 40 32 33 45 26 35 31 51 42 36 26 17 33 15 6 15 33 30 32 34 34 31 36 51 51 43 31 22 42 29 31 38 33 32 34 24 34 34 43 38 38 35 34 43 22 29 32 22 36 31 31 28 26 18 33 25 34 37 23 48 46 46 36 32 25 31 28 23 21 19 24 31 23 27 25 31 35 26 43 25 29 21 31 42 19 30 28 18 39 15 18 39 21 36 21 24 29 28 19 23 16 20 23 32 9 13 11 21 21 23 10 10 31 31 32 31 27 21 17 23 31 31 17 17 17 23 13 16 33 27 38 30 28 15 20 25 21 14 24 13 48 19 18 15 6 4 13 32 43 30 19 43 26 16 24 48 39 25 10 19 11 22 22 23 14 25 16 48 19 16 21 24 15 23 48 43 30 16 26 34 13 8 6 13 16 22 10 14 21 24 20 27 24 12 25 4 10 13 28 18 11 16 13 18 8 22 5 11 23 5 10 10 15 14 5 6 5 10 21 24 24 27 13 19 24 16 11 6 11 11 30 19 17 12 6 16 20 19 19 6 9 9 3 5 7 6 6 15 12 3 6 9 24 7 8 4 16 19 9 6 11 8 12 10 10 13 16 21 22 16 5 4 3 6 11 28 8 6 4 5 19 15 10 10 8 4 13 4 9 6 4 1 6 8 5 17 22 8 5 5 2 4 7 26 26 22 6 6 5 7 8 6 16 13 18 9 14 8

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_86012730_86013882
seq2: B6Ng01-255F07.b_46_1191 (reverse)

seq1  TAGCTC-ACTCAGT-AGAGTGCTA-GTTTAGTATGCCTCAGGCCCTGGGT  47
      |||||| ||||||| | ||||||| |||||||||| |||| |||||||  
seq2  TAGCTCAACTCAGTAAAAGTGCTAGGTTTAGTATG-CTCAAGCCCTGG--  47

seq1  TTGATCTTCAGCCTTGTACAAGCAGGTTTCCTTGCCACACCTGTAATCCT  97
      ||||||||||||  |||||||||||  || |||||  |||||||||| ||
seq2  TTGATCTTCAGC--TGTACAAGCAG--TTTCTTGCACCACCTGTAAT-CT  92

seq1  AGACTCAGAAGTTTAAGGTTATCCTCTGCTACATAGTGAGTTCAAGGCCA  147
      ||||||||||| |||||||||||||||||||||||||||  |||||||||
seq2  AGACTCAGAAG-TTAAGGTTATCCTCTGCTACATAGTGAAGTCAAGGCCA  141

seq1  GCCCGAACCTGTCTCAAACAAAAACATAAAGACAAAATCAGTTGACTCAT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCCGAACCTGTCTCAAACAAAAACATAAAGAC-AAATCAGTTGACTCAT  190

seq1  TGGCTAAAGGCCCATGCAAAGGTCTAATGACCTAACTGTGATCCCAGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGGCCCATGCAAAGGTCTAATGACCTAACTGTGATCCCAGGGA  240

seq1  TATACACAGTAGAGGGACAGAACTCACTCTTGCAAGTTATCCCCTTGCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGTAGAGGGACAGAACTCACTCTTGCAAGTTATCCCCTTGCAA  290

seq1  GTACACGAATATCATGGCACCCACCTCTCCCACTACAATAGTGTAATACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGAATATCATGGCACCCACCTCTCCCACTACAATAGTGTAATACA  340

seq1  TACATTTTAAAGGGGTGAAACATATAGTTGGTCAGTGCTCCAAAATCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAAAGGGGTGAAACATATAGTTGGTCAGTGCTCCAAAATCCAG  390

seq1  TTTGAGATTTGGGAAGTCCAGAATCCTGTTATTTTGTAAGTTTTTTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATTTGGGAAGTCCAGAATCCTGTTATTTTGTAAGTTTTTTCTTT  440

seq1  TTCTTGTTAAAACTAGGGTAATCAGTCTTGGGGTAGTCAAACCAGTTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTAAAACTAGGGTAATCAGTCTTGGGGTAGTCAAACCAGTTTGA  490

seq1  TGAGTGCCCCTCCCACTTCTCCCATCAGAAATTGGCTTCAGACCTTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCCCTCCCACTTCTCCCATCAGAAATTGGCTTCAGACCTTCCTG  540

seq1  CTCATTGGTTGATGGTTAGAATCGGATCAGCAGGTGCAACAGTGGGAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGTTGATGGTTAGAATCGGATCAGCAGGTGCAACAGTGGGAGTG  590

seq1  GATGGAACGGAGCTTTGCAAAAAGGCTCCAAAGAAATTCTGTAAACAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACGGAGCTTTGCAAAAAGGCTCCAAAGAAATTCTGTAAACAGAA  640

seq1  ATGAAGGCCAGGTAAATAAAGTACCTTCATTTTCTACGCCACACTGAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCCAGGTAAATAAAGTACCTTCATTTTCTACGCCACACTGAACC  690

seq1  TAGTAGAAAGAGATCACAGCAGACAGCTAACAAGCCATAGAATAGGTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAAGAGATCACAGCAGACAGCTAACAAGCCATAGAATAGGTTGT  740

seq1  TTGTTTAGGGAGGGTGGACAGGATAAGGTGAGGAAGATGTTCACGTGATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGGGAGGGTGGACAGGATAAGGTGAGGAAGATGTTCACGTGATA  790

seq1  TATATTGGCCTTGTGAGTGGTGAGAACTTAACCAGGCCCTCTAGAAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGCCTTGTGAGTGGTGAGAACTTAACCAGGCCCTCTAGAAGAAG  840

seq1  AATCAGTACTCTTAAGTGCTGAGCCATCTCTCTCTCCAGCCAGACCTCGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTACTCTTAAGTGCTGAGCCATCTCTCTCTCCAGCCAGACCTCGC  890

seq1  CAATGTGATCTGAAACACTGCTGACCAAGCTTTTGTTTTCATGAGCTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATCTGAAACACTGCTGACCAAGCTTTTGTTTTCATGAGCTCCC  940

seq1  ATGTAGGCCTTGAAATATTTTCACTGATTAAAAGTCACCAGGACATAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCCTTGAAATATTTTCACTGATTAAAAGTCACCAGGACATAATT  990

seq1  GAGAACTCAGCTTACTACAAAAGAAGTCAGAATAATTACTGATAAAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCAGCTTACTACAAAAGAAGTCAGAATAATTACTGATAAAGGGA  1040

seq1  CAAAGGATGGGATGGAAATCAAGAGCATTCTGTGTAGGAGCAGATGATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATGGGATGGAAATCAAGAGCATTCTGTGTAGGAGCAGATGATGA  1090

seq1  GGTCCCGTGAAGGGTCTTAGGGTGATGAGTATGTTGCACGAGGTGGGATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCGTGAAGGGTCTTAGGGTGATGAGTATGTTGCACGAGGTGGGATG  1140

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1146

seq1: chr3_85865450_85866598
seq2: B6Ng01-255F07.g_68_1216

seq1  GAATTCCTGTACAATGGTATATTGAAGGTGGAATTCACTTATATTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTACAATGGTATATTGAAGGTGGAATTCACTTATATTCAAAA  50

seq1  ATAATTACTCACTTGTGAGGCAGAGGCAGGAGAATCTCTCTGAGTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACTCACTTGTGAGGCAGAGGCAGGAGAATCTCTCTGAGTTTGAG  100

seq1  GCCGTCCTGGTCTATATAACAGTACCAGGCCAGCCAAGAATACATAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCTGGTCTATATAACAGTACCAGGCCAGCCAAGAATACATAGTGA  150

seq1  ACCCCTGTCTCAGAAACAATTATTGTATGTGTTAGCATTTTTCTAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTCTCAGAAACAATTATTGTATGTGTTAGCATTTTTCTAAGTAA  200

seq1  TGAGGTAATTCATACTAATTATTAAGACATGTGAAATTTAATTTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAATTCATACTAATTATTAAGACATGTGAAATTTAATTTTTTTAA  250

seq1  AAAAACTCCATAATAATTTTGTTGTGGCTGAATTATCTAAAATGCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCCATAATAATTTTGTTGTGGCTGAATTATCTAAAATGCTACTG  300

seq1  AGAATTGGCAATCTTAGCCTACTGACCTTTTCTTCATTTCACTAATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGCAATCTTAGCCTACTGACCTTTTCTTCATTTCACTAATACTT  350

seq1  CCTTTTTTGTAGCTCACAGACCCAGATATATATACCTTTACCTGAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTGTAGCTCACAGACCCAGATATATATACCTTTACCTGAGTTTG  400

seq1  AGTGGTGAGCCTGCAAGTGGGTTGGCTTGACCCACTCCCCAAGATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGCCTGCAAGTGGGTTGGCTTGACCCACTCCCCAAGATGGTTC  450

seq1  TGACCTCATTTGGGAAAATACGTTGGGATTTGACAAGGGGTTTAATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTTGGGAAAATACGTTGGGATTTGACAAGGGGTTTAATATCC  500

seq1  TGAGGAACAACTTTGTCAGTCAGCTTTAAACATTCTTGTTACATTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACAACTTTGTCAGTCAGCTTTAAACATTCTTGTTACATTTATTT  550

seq1  GTGGAGAGGGCATATGCTACACCTGGCCGGAGTCTCGTCTCTCCTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGGGCATATGCTACACCTGGCCGGAGTCTCGTCTCTCCTTCTAC  600

seq1  CATGTAGGTCCTAGGGATGGCTCTTAGGTCCCCCGGCTCGGCACATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGTCCTAGGGATGGCTCTTAGGTCCCCCGGCTCGGCACATGCTC  650

seq1  CATCCACTGCACTGTCTCCATGGCCCCATCACTCAGCCTGCAGTGAGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTGCACTGTCTCCATGGCCCCATCACTCAGCCTGCAGTGAGCCG  700

seq1  GTGTCCTCACCTTTTTTAGTACTTCCTGTGAGGCTGCTATCACTGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCACCTTTTTTAGTACTTCCTGTGAGGCTGCTATCACTGCTGGC  750

seq1  CTTCCTGTCATGGAGGTCCCACCCAATTTTCTTCAGATCCTGGCTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTCATGGAGGTCCCACCCAATTTTCTTCAGATCCTGGCTTTCTT  800

seq1  GAGTCATGGCTTGTGTGAGTAATGTCAACTTTAGAGTAAAGCTTAGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGGCTTGTGTGAGTAATGTCAACTTTAGAGTAAAGCTTAGGTTC  850

seq1  TCACCCCACCATCTACAGTTGCAGTTCACCATGCGATTGCCCCCACCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCACCATCTACAGTTGCAGTTCACCATGCGATTGCCCCCACCACA  900

seq1  CACTTCTCTTCCTGAGAAGAGGAGAACCCAGTGTCCTCTGACATGATTCT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTTCTCTTCCTGAGAAGAGGAGAACCCAGTGTCTTCTGACATGATTCT  950

seq1  GTGCAGACAGGAACAGCCATAAATCTAGGGGGAAAGTTTTGGCCTTGGTT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGCAGACAGGAACAGCCATAAATCTA-GGGGAAAGTTTTGGCCTTGGTT  999

seq1  TCAGTGGGGTCCCT-CTCTGTAGCAGAATGCCCAGTGTTACCACAG-TAG  1048
      |||||||||||||| ||||||||||| ||||||||||||||||||| |||
seq2  TCAGTGGGGTCCCTCCTCTGTAGCAG-ATGCCCAGTGTTACCACAGTTAG  1048

seq1  CTGTCATCTCATCAACAGCAGTAATAAAACATGGA-CTAGGATTGAATAT  1097
      ||||||||||||| ||||||||||| ||||||||| |||||||  |||||
seq2  CTGTCATCTCATC-ACAGCAGTAAT-AAACATGGACCTAGGATGAAATAT  1096

seq1  CTTCTTATCAAATA-TTCAGTGGCATCTAAGCCAGGATAAAATAGG-CTG  1145
      |||||||||||||| |||||| ||||||| |||| ||||||||||| |||
seq2  CTTCTTATCAAATATTTCAGT-GCATCTAGGCCAAGATAAAATAGGCCTG  1145

seq1  AATC  1149
      ||||
seq2  AATC  1149

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information