BAC Information

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BAC

Clone NameB6Ng01-255J06
Chromosome3 (Build37)
Map Location 5,263,180 - 5,401,904
singlet/doubletdoublet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255J06.bB6Ng01-255J06.g
ACCGA061752GA061753
length1,2141,038
definitionB6Ng01-255J06.b B6Ng01-255J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,263,180 - 5,264,394)(5,400,717 - 5,401,904)
sequence
gaattcatctgtgagctctgtactcaatagaagagctgtgctttaaatat
gcatctgtagcaaaatgtcagttctgggctgtttggtaatctcactgata
atgtagttcatatttttaaaaagattccagcaaaatacccacctttccac
aaacagaatggttagagctgattcagcaagttaggttaaaaagaatctaa
ttaattgtttctggtctttaggaacactttagtggtcttaatgacttact
aatcattattgctgatacctcagacccgtgaaggataaagctacttgtgc
tcctggagtataactccagtacttggttaatgttaggtaatagacagcat
gtatataccaagcaactacaaacattttgtggtgagataaaagacataat
atatcattgtattataatgttacataagtgttttgttctactatgataca
tttgtcagccacctgtgccagtacaaattcaagaacatttcatagttaca
gtcctataatactagttaacactgcttcaaattaaaccgatttgcatagc
ttggggaagccactggtacataggatcaaggcaagtggggaagcttcttt
tgtggtttgtttttgaccttgtattttcattgtaacagttctttcttccc
tcttcttccccaacttgtacataattcaccttttcattgagtccctgccc
agagcatggagatttgtccctatacagagatctaaaatgtcaccgcacaa
aaatcaccaaataatacacagtaaaccagatatcattttaaagagaaaag
agttttgctaattagcaagtaaaagccaaagtgtatttttttaaaattat
atgaagactttactgctttgataaaatgtacacatatagcaagggacaag
agaaaggtttactgggattcaaatatttgtattttctttgtttatatact
tttaggttgatgatgatttcaaaaatgcatttttaccagaaatagtgaca
cattctatatcagaaaatatttgccaccttataattttgatgccgctttt
gaatgcaataacccaggaagagacatggtgacttgtaccaagaattatag
tacaggtgttagaagaattttagaataattcacctttttaccttaggtga
atgcttaggtagccaaataccgattcggtaactaattgaactttatgttt
aatgagggtttaca

gaattcttctcaggttctggtttaggagaaggaatcaggggcgtgctagt
cccagagcctgaactggctactagggttgcagtgcttttggctgtatctg
tttgtccagacaccatgcaatgcttgtacaacacttgatcagtggcatcc
atggagtcttccgtttggctttcatcttgggcatcatcatcttcatcttt
ataacactgctttttctgatgtgtgatcaagtcaaagatcctggggaaaa
ccacattgcactttttgcattggtattgcatgttgcttgttctaatgtag
cgttcattggtgagttctcttttttcattatctttagcttctgcttggtt
ctcatagctcttccttgctttctgccgagcattctggaaccatacaacaa
taacccgggtggggaggttgagaacagtcgacagctgttctatttcatcg
tcttttggataagcatttgtgtcgaaaaagtcttgaagaaccctaagctg
gtagtcagtaaaccttgtcctggatgatcttttgctgaatgcggcatctg
atttgtaatgttctaaagatgtaggttgcggatcaattcgaatatcttct
aaaacagttataggagggttactgaagttgtatggagaatctttatttct
ctgtcgttccttaaagagtgtatttcgaaaccagtgtttgatgacttttt
gagagaggccagatttctcagccatttcttggatctgttcttcacttgga
gaattattgatgtcaaaataagctctcagaatttttagctgatcatctgt
aatccgggtccgtggccgtttgaattgagaatgtctcaagaagttagggt
ctatccccagctgctgttgacaaagctgagtgagatctgctgagagggtg
tccatctggggcagctgcagggccagctgtgggggaagtgcaaggtgctg
cactggctgcatcatatggaaggaagagggggaggtcaagggaaacaggc
attggaccttgttgtgggtgcagatgggggaaggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5263180_5264394
seq2: B6Ng01-255J06.b_46_1259

seq1  GAATTCATCTGTGAGCTCTGTACTCAATAGAAGAGCTGTGCTTTAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTGAGCTCTGTACTCAATAGAAGAGCTGTGCTTTAAATAT  50

seq1  GCATCTGTAGCAAAATGTCAGTTCTGGGCTGTTTGGTAATCTCACTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTAGCAAAATGTCAGTTCTGGGCTGTTTGGTAATCTCACTGATA  100

seq1  ATGTAGTTCATATTTTTAAAAAGATTCCAGCAAAATACCCACCTTTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTCATATTTTTAAAAAGATTCCAGCAAAATACCCACCTTTCCAC  150

seq1  AAACAGAATGGTTAGAGCTGATTCAGCAAGTTAGGTTAAAAAGAATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGGTTAGAGCTGATTCAGCAAGTTAGGTTAAAAAGAATCTAA  200

seq1  TTAATTGTTTCTGGTCTTTAGGAACACTTTAGTGGTCTTAATGACTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTTCTGGTCTTTAGGAACACTTTAGTGGTCTTAATGACTTACT  250

seq1  AATCATTATTGCTGATACCTCAGACCCGTGAAGGATAAAGCTACTTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATTGCTGATACCTCAGACCCGTGAAGGATAAAGCTACTTGTGC  300

seq1  TCCTGGAGTATAACTCCAGTACTTGGTTAATGTTAGGTAATAGACAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGTATAACTCCAGTACTTGGTTAATGTTAGGTAATAGACAGCAT  350

seq1  GTATATACCAAGCAACTACAAACATTTTGTGGTGAGATAAAAGACATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACCAAGCAACTACAAACATTTTGTGGTGAGATAAAAGACATAAT  400

seq1  ATATCATTGTATTATAATGTTACATAAGTGTTTTGTTCTACTATGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTGTATTATAATGTTACATAAGTGTTTTGTTCTACTATGATACA  450

seq1  TTTGTCAGCCACCTGTGCCAGTACAAATTCAAGAACATTTCATAGTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGCCACCTGTGCCAGTACAAATTCAAGAACATTTCATAGTTACA  500

seq1  GTCCTATAATACTAGTTAACACTGCTTCAAATTAAACCGATTTGCATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATAATACTAGTTAACACTGCTTCAAATTAAACCGATTTGCATAGC  550

seq1  TTGGGGAAGCCACTGGTACATAGGATCAAGGCAAGTGGGGAAGCTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGCCACTGGTACATAGGATCAAGGCAAGTGGGGAAGCTTCTTT  600

seq1  TGTGGTTTGTTTTTGACCTTGTATTTTCATTGTAACAGTTCTTTCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGTTTTTGACCTTGTATTTTCATTGTAACAGTTCTTTCTTCCC  650

seq1  TCTTCTTCCCCAACTTGTACATAATTCACCTTTTCATTGAGTCCCTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCCAACTTGTACATAATTCACCTTTTCATTGAGTCCCTGCCC  700

seq1  AGAGCATGGAGATTTGTCCCTATACAGAGATCTAAAATGTCACCGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGGAGATTTGTCCCTATACAGAGATCTAAAATGTCACCGCACAA  750

seq1  AAATCACCAAATAATACACAGTAAACCAGATATCATTTTAAAGAGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCAAATAATACACAGTAAACCAGATATCATTTTAAAGAGAAAAG  800

seq1  AGTTTTGCTAATTAGCAAGTAAAAGCCAAAGTGTATTTTTTTAAAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTAATTAGCAAGTAAAAGCCAAAGTGTATTTTTTTAAAATTAT  850

seq1  ATGAAGACTTTACTGCTTTGATAAAATGTACACATATAGCAA-GGACAAG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGAAGACTTTACTGCTTTGATAAAATGTACACATATAGCAAGGGACAAG  900

seq1  AG-AAGGTTTACTGGGATTCAAATATTTGTATTTTCTTTGTTTATATACT  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTTACTGGGATTCAAATATTTGTATTTTCTTTGTTTATATACT  950

seq1  TTTAGGTTGATGATGATTTCAAAAATGCATTTTTACCAGAAATAGTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTGATGATGATTTCAAAAATGCATTTTTACCAGAAATAGTGACA  1000

seq1  CATTCTATATCAG-AAATATTTGCCACCTTATTAATTTTGATGCCGCTTT  1047
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CATTCTATATCAGAAAATATTTGCCACCTTA-TAATTTTGATGCCGCTTT  1049

seq1  TGAATGC-ATAACCAGGGAAGAGACATGTGAACTTGGAACCAAGGAAATT  1096
      ||||||| ||||||  ||||||||||||   |||| | ||||||  ||||
seq2  TGAATGCAATAACCCAGGAAGAGACATGGTGACTT-GTACCAAG--AATT  1096

seq1  ATAGTACCAGTTGTAGAAGGAATTTTAGATTAAATCACCTTTTTAACTTT  1146
      |||||||  ||  ||||| |||||||||| ||| ||||||||||| ||| 
seq2  ATAGTACAGGTGTTAGAA-GAATTTTAGAATAATTCACCTTTTTACCTTA  1145

seq1  AGTG-ATGCTTTAAGGTAGCAATATACCTATTCTGTTAACTAATTTGACT  1195
       ||| ||||||  ||||||| | ||||| |||| | |||||||||  |||
seq2  GGTGAATGCTT--AGGTAGCCAAATACCGATTC-GGTAACTAATTGAACT  1192

seq1  TTATGTTTAATGA--GTTTACA  1215
      |||||||||||||  |||||||
seq2  TTATGTTTAATGAGGGTTTACA  1214


seq1: chr3_5400717_5401904
seq2: B6Ng01-255J06.g_66_1103 (reverse)

seq1  ACCTCCTCCCCTGCCACCTGCACCCCCACAGCCTTCTACTTTGGGGCCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAAATCCCAAACACAGTATCTGCTCCTCTGCAAGCTCCACCACCCACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCACCGCCTCCACCTCCTCCTCCTCCTCCTCCACCACCTCCACCCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTCC-TCCCCCATCTGCA-CCACAAC-AGGTCCAATTGCCTGTTTCCC  197
      |||||| ||||||||||||| ||||||| |||||||| ||||||||||||
seq2  ACCTCCTTCCCCCATCTGCACCCACAACAAGGTCCAA-TGCCTGTTTCCC  49

seq1  TTGACCTCCCCCTCTTTCCTTCCATTATGATGCAGCCAGTGCAGCACCCT  247
      |||||||||||||| ||||||||| ||||||||||||||||||||||| |
seq2  TTGACCTCCCCCTC-TTCCTTCCA-TATGATGCAGCCAGTGCAGCACCTT  97

seq1  GCACTTCCCCCACAGCTGGCCCTGCAGCTGCCCCAGATGGACACCCTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCCCCACAGCTGGCCCTGCAGCTGCCCCAGATGGACACCCTCTC  147

seq1  AGCAGATCTCACTCAGCTTTGTCAACAGCAGCTGGGGATAGACCCTAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCTCACTCAGCTTTGTCAACAGCAGCTGGGGATAGACCCTAACT  197

seq1  TCTTGAGACATTCTCAATTCAAACGGCCACGGACCCGGATTACAGATGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGACATTCTCAATTCAAACGGCCACGGACCCGGATTACAGATGAT  247

seq1  CAGCTAAAAATTCTGAGAGCTTATTTTGACATCAATAATTCTCCAAGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAAATTCTGAGAGCTTATTTTGACATCAATAATTCTCCAAGTGA  297

seq1  AGAACAGATCCAAGAAATGGCTGAGAAATCTGGCCTCTCTCAAAAAGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATCCAAGAAATGGCTGAGAAATCTGGCCTCTCTCAAAAAGTCA  347

seq1  TCAAACACTGGTTTCGAAATACACTCTTTAAGGAACGACAGAGAAATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACTGGTTTCGAAATACACTCTTTAAGGAACGACAGAGAAATAAA  397

seq1  GATTCTCCATACAACTTCAGTAACCCTCCTATAACTGTTTTAGAAGATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCATACAACTTCAGTAACCCTCCTATAACTGTTTTAGAAGATAT  447

seq1  TCGAATTGATCCGCAACCTACATCTTTAGAACATTACAAATCAGATGCCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATTGATCCGCAACCTACATCTTTAGAACATTACAAATCAGATGCCG  497

seq1  CATTCAGCAAAAGATCATCCAGGACAAGGTTTACTGACTACCAGCTTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCAAAAGATCATCCAGGACAAGGTTTACTGACTACCAGCTTAGG  547

seq1  GTTCTTCAAGACTTTTTCGACACAAATGCTTATCCAAAAGACGATGAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAAGACTTTTTCGACACAAATGCTTATCCAAAAGACGATGAAAT  597

seq1  AGAACAGCTGTCGACTGTTCTCAACCTCCCCACCCGGGTTATTGTTGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCTGTCGACTGTTCTCAACCTCCCCACCCGGGTTATTGTTGTAT  647

seq1  GGTTCCAGAATGCTCGGCAGAAAGCAAGGAAGAGCTATGAGAACCAAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGAATGCTCGGCAGAAAGCAAGGAAGAGCTATGAGAACCAAGCA  697

seq1  GAAGCTAAAGATAATGAAAAAAGAGAACTCACCAATGAACGCTACATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAAGATAATGAAAAAAGAGAACTCACCAATGAACGCTACATTAG  747

seq1  AACAAGCAACATGCAATACCAATGCAAAAAGTGCAATGTGGTTTTCCCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAACATGCAATACCAATGCAAAAAGTGCAATGTGGTTTTCCCCA  797

seq1  GGATCTTTGACTTGATCACACATCAGAAAAAGCAGTGTTATAAAGATGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTGACTTGATCACACATCAGAAAAAGCAGTGTTATAAAGATGAA  847

seq1  GATGATGATGCCCAAGATGAAAGCCAAACGGAAGACTCCATGGATGCCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGATGCCCAAGATGAAAGCCAAACGGAAGACTCCATGGATGCCAC  897

seq1  TGATCAAGTGTTGTACAAGCATTGCATGGTGTCTGGACAAACAGATACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTGTTGTACAAGCATTGCATGGTGTCTGGACAAACAGATACAG  947

seq1  CCAAAAGCACTGCAACCCTAGTAGCCAGTTCAGGCTCTGGGACTAGCACG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCACTGCAACCCTAGTAGCCAGTTCAGGCTCTGGGACTAGCACG  997

seq1  CCCCTGATTCCTTCTCCTAAACCAGAACCTGAGAAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGATTCCTTCTCCTAAACCAGAACCTGAGAAGAATTC  1038


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