BAC Information

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BAC

Clone NameB6Ng01-261H19
Chromosome3 (Build37)
Map Location 86,333,353 - 86,334,484
singlet/doubletsinglet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H19.bB6Ng01-261H19.g
ACCGA066145GA066146
length1,1281,167
definitionB6Ng01-261H19.b B6Ng01-261H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttactctttctttacttcattgtttgggtccctagtttacat
aaaaactaatacagtgatatcatttcaaaataaatttacaatatatacaa
ggtagttacacaagcacaagacaattgtttgaactcagttaatgatataa
aattccccttagttgagaaggaaagaggcagtacccagatggttgtgtgc
agggctttgatagtcaaagagctggcataggtacttcatcattctgcctt
cctacatttatctgttaaaattattatcaaatatcaggcaggatgcagta
gtgaaccccaggctgctccttgtctttaggggaatgatacaatgagggcc
tattcatcagtgcagcaatcggcacaagtaattagttccctagactgaga
tttgctataaagcctatttcagtcagtaccacaaacatatgatggtgcaa
agctaatgaaagctgctaaaatttgttaaccttttctatcatcaatcctt
ctaataccctatgcttcagtattatgcaaaggtagtaaattattaatttg
tcattaattcatctttctatattttctgtcaaattaaatgatgtcattct
tcttgataacaattaaaattataagagatgctaacttactatgataaaat
tattactaaattaggtaacaaaagattctactataatgcacacagtgaaa
tcaagtccaatgtctattaaaccatttgcacaatggtactgtgtatcaga
aaatttgaaaaattatttaaaaattactcacaaattggcctgtaactcag
aatattcaatgtgaatattaaccaaagtaaaagggaaacaggaaaatagt
tatatataggctctaacactaattttaaaaaagccaaactggtgactttg
ggctgataaaataaaagcaccaatgtactaggaactagaaaattaaatca
catagaaaaaaagtttataaagggtaagtttaatttcatagctacatata
tgtgtgtcttaaaatatgaatgtttatggaaacttttaaaaatgatcaga
tgtaatcaaacatgagctgtgttgcattagatgctagtacatctgtaact
actggtctgttatcacccaaggaacatt
gaattcttacctgaagaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagg
agatgctggagagcatatggagaaagaggaacactcctccattgttggtg
gaattgcaagcttgttcaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatatctctcccgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
tttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccttcaacagaggaatggatacagaaaatgtggtacatttatacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagagcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcaatgataagtggatattagcccagaaac
ttagaacacccaagatataagatacaatttgtgaaacacatgaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacgaagtttggagctgagacg
aaaggatggacaatctagagactgccatatctgggggtccatcccataat
cagcttccaaacgctgacaccattgcatacactagcaagattttactgaa
aggacccagatatagctgtctcttgtgagactatgccgaggtctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagggccccc
aatgggaggagctagagaaagtaccaaagagctaaagggatctgcaaccc
tatagtagacacagtatgactaccagtacccctgagctcgtgtctctagc
tgcatatgtatcagagatgactagtgcatcagtgaagaaagtcatgaaca
cgctaaccttaaatgctcagtaaggacgcaggtcagatggaatgtgtgtt
gggcaagccaagttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_86333353_86334484
seq2: B6Ng01-261H19.b_42_1169 (reverse)

seq1  AATGTTCTTTGGGTGATAACAGGCCCAGTAGGTTACAGATGGTACTAGCA  50
      ||||||| ||||||||||||| | |||||| ||||||||| |||||||||
seq2  AATGTTCCTTGGGTGATAACA-GACCAGTA-GTTACAGAT-GTACTAGCA  47

seq1  TTCTAATGC-ACACAGCTCCATGTTTGGATTACATCTGATCATTTTT-AA  98
       |||||||| |||||||| ||||||| |||||||||||||||||||| ||
seq2  -TCTAATGCAACACAGCT-CATGTTT-GATTACATCTGATCATTTTTAAA  94

seq1  AGTTTCCATAAAACATTCATATTTTAAGACACACATATATGTAGCTATGA  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAT-AAACATTCATATTTTAAGACACACATATATGTAGCTATGA  143

seq1  AATTAAACTTA-CCTTTATAAACTTTTTTTCTATGTGATTTAATTTTCTA  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTTACCCTTTATAAACTTTTTTTCTATGTGATTTAATTTTCTA  193

seq1  GTTCCTAGTACATTGGTGCTTTTATTTTATCAGCCCAAAGTCACCAGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGTACATTGGTGCTTTTATTTTATCAGCCCAAAGTCACCAGTTT  243

seq1  GGCTTTTTTAAAATTAGTGTTAGAGCCTATATATAACTATTTTCCTGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTAAAATTAGTGTTAGAGCCTATATATAACTATTTTCCTGTTT  293

seq1  CCCTTTTACTTTGGTTAATATTCACATTGAATATTCTGAGTTACAGGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTACTTTGGTTAATATTCACATTGAATATTCTGAGTTACAGGCCA  343

seq1  ATTTGTGAGTAATTTTTAAATAATTTTTCAAATTTTCTGATACACAGTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGTAATTTTTAAATAATTTTTCAAATTTTCTGATACACAGTAC  393

seq1  CATTGTGCAAATGGTTTAATAGACATTGGACTTGATTTCACTGTGTGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCAAATGGTTTAATAGACATTGGACTTGATTTCACTGTGTGCAT  443

seq1  TATAGTAGAATCTTTTGTTACCTAATTTAGTAATAATTTTATCATAGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGAATCTTTTGTTACCTAATTTAGTAATAATTTTATCATAGTAA  493

seq1  GTTAGCATCTCTTATAATTTTAATTGTTATCAAGAAGAATGACATCATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCTCTTATAATTTTAATTGTTATCAAGAAGAATGACATCATTT  543

seq1  AATTTGACAGAAAATATAGAAAGATGAATTAATGACAAATTAATAATTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACAGAAAATATAGAAAGATGAATTAATGACAAATTAATAATTTA  593

seq1  CTACCTTTGCATAATACTGAAGCATAGGGTATTAGAAGGATTGATGATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTGCATAATACTGAAGCATAGGGTATTAGAAGGATTGATGATAG  643

seq1  AAAAGGTTAACAAATTTTAGCAGCTTTCATTAGCTTTGCACCATCATATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTAACAAATTTTAGCAGCTTTCATTAGCTTTGCACCATCATATG  693

seq1  TTTGTGGTACTGACTGAAATAGGCTTTATAGCAAATCTCAGTCTAGGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTACTGACTGAAATAGGCTTTATAGCAAATCTCAGTCTAGGGAA  743

seq1  CTAATTACTTGTGCCGATTGCTGCACTGATGAATAGGCCCTCATTGTATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACTTGTGCCGATTGCTGCACTGATGAATAGGCCCTCATTGTATC  793

seq1  ATTCCCCTAAAGACAAGGAGCAGCCTGGGGTTCACTACTGCATCCTGCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTAAAGACAAGGAGCAGCCTGGGGTTCACTACTGCATCCTGCCT  843

seq1  GATATTTGATAATAATTTTAACAGATAAATGTAGGAAGGCAGAATGATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGATAATAATTTTAACAGATAAATGTAGGAAGGCAGAATGATGA  893

seq1  AGTACCTATGCCAGCTCTTTGACTATCAAAGCCCTGCACACAACCATCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTATGCCAGCTCTTTGACTATCAAAGCCCTGCACACAACCATCTG  943

seq1  GGTACTGCCTCTTTCCTTCTCAACTAAGGGGAATTTTATATCATTAACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCCTCTTTCCTTCTCAACTAAGGGGAATTTTATATCATTAACTG  993

seq1  AGTTCAAACAATTGTCTTGTGCTTGTGTAACTACCTTGTATATATTGTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAACAATTGTCTTGTGCTTGTGTAACTACCTTGTATATATTGTAA  1043

seq1  ATTTATTTTGAAATGATATCACTGTATTAGTTTTTATGTAAACTAGGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGAAATGATATCACTGTATTAGTTTTTATGTAAACTAGGGAC  1093

seq1  CCAAACAATGAAGTAAAGAAAGAGTAAGTGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  CCAAACAATGAAGTAAAGAAAGAGTAAGTGAATTC  1128