BAC Information

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BAC

Clone NameB6Ng01-261I04
Chromosome3 (Build37)
Map Location 145,463,356 - 145,614,069
singlet/doubletdoublet
Overlap geneDdah1, LOC100040331, Bcl10, 2410004B18Rik
Upstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneSyde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261I04.bB6Ng01-261I04.g
ACCGA066163GA066164
length4391,098
definitionB6Ng01-261I04.b B6Ng01-261I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,613,625 - 145,614,069)(145,463,356 - 145,464,455)
sequence
ctagtttgaggtcaacctgtgctacaaaggaagtttgaggccgtgatgag
ctacacattgagtccctgtattaataaaagagcaaatttaaacctatttc
acctacttttatattgtaataattgtgatttttaagtatacactgctgtc
ctgtaaaccaacatgataacactgtaatggcagggaagccattacaaaca
cactgctgtttccattccggtcggggcaattaaggaggggcttttatcgc
gacttcagtaactgggagaatttcattcataagaaaatgtttcaaagata
aggcaaggggcgggtgaagaagaaagcatcatgggggttgggggaggggt
caggaggaagactcttgcgggttttatctctgacaggatggtgacttttg
ctgtttcctgccttcaagagtgttgtaggatttttgtgt
gaattccaagtcccagattgtttgaaactccaggatctatccagtgcctg
gatattgggctgggtttcttcttcaaaggagttcttggtgtgttctgtaa
acttccctcagtgcacacattaccgcggtcacctccgaattcaggatttg
ctgttttactttgtagagccccctgttttaaagtagacacgacatttttt
tggccccgaccgttaacgctttgggcttccgaccctgcacatttaagacc
ttgctttgatttgaaatctattcttgtatattgtgtaaacaaggcatcca
atttcttctttttcccatatggagaactgagcttccagggccattttgaa
taccctgtcttttgcacacacaccccaaactcatctacaaaggtttcttt
gtcctgagctatgagctcaccctctgcccctataacatcctgcatgtgct
tgcatctgtttctgagttcttctgtttacctctatgtcagtttctctatg
ccagtgtgccagcgcatcatttactatctagaacaaagggataataatca
ttttcaaagttaaactcacagagcctgacacatgttaaataattacctgt
tattacctaagtaaggtatacattttaatgcataaagttttatagaaagt
tagtaaatattcctgtttaaaaaaaaaccactttttgcatttgattttgt
gttgctgtggttgtttagagatatactaagagtacctattcagccattat
catattggggttcagcaaacagtgcattagtatatgagacctgctgtgct
gaacactttgaactaaaggatattgggaggtctctaaggtgaagtctctt
tagccttccccttcctcctgtccctacaacctgcttctcccctaagggag
tcacatacaaaaaaagtgcattttctctttctctcagatgggtcacagga
gctaggcctccactcatcaccaagaataagcagtaaatcctagcaagatt
cctgcttcatctgccctcaaagactatcatcacagggcttctccttctca
tcccatgagatgaatgtacctagagattccgagatgtgtctgaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145613625_145614069
seq2: B6Ng01-261I04.b_50_494 (reverse)

seq1  ACACAAAAATCCTACAACACTCTTGAAGGCAGGAAACAGCAAAAGTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAATCCTACAACACTCTTGAAGGCAGGAAACAGCAAAAGTCACC  50

seq1  ATCCTGTCAGAGATAAAACCCGCACGAGTCTTCCTCCTGACCCCTCCCCC  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCCTGTCAGAGATAAAACCCGCAAGAGTCTTCCTCCTGACCCCTCCCCC  100

seq1  AACCCCCATGATGCTTTCTTCTTCACCCGCCCCTTGCCTTATCTTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCATGATGCTTTCTTCTTCACCCGCCCCTTGCCTTATCTTTGAAA  150

seq1  CATTTTCTTATGAATGAAATTCTCCCAGTTACTGAAGTCGCGATAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTATGAATGAAATTCTCCCAGTTACTGAAGTCGCGATAAAAGC  200

seq1  CCCTCCTTAATTGCCCCGACCGGAATGGAAACAGCAGTGTGTTTGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTAATTGCCCCGACCGGAATGGAAACAGCAGTGTGTTTGTAATG  250

seq1  GCTTCCCTGCCATTACAGTGTTATCATGTTGGTTTACAGGACAGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGCCATTACAGTGTTATCATGTTGGTTTACAGGACAGCAGTGT  300

seq1  ATACTTAAAAATCACAATTATTACAATATAAAAGTAGGTGAAATAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAAATCACAATTATTACAATATAAAAGTAGGTGAAATAGGTTT  350

seq1  AAATTTGCTCTTTTATTAATACAGGGACTCAATGTGTAGCTCATCACGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCTCTTTTATTAATACAGGGACTCAATGTGTAGCTCATCACGGC  400

seq1  CTCAAACTTCCTTTGTAGCACAGGTTGACCTCAAACTAGGAATTC  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTTCCTTTGTAGCACAGGTTGACCTCAAACTAGGAATTC  445

seq1: chr3_145463356_145464455
seq2: B6Ng01-261I04.g_66_1163

seq1  GAATTCCAAGTCCCAGATTGTTTGAAACTCCAGGATCTATCCAGTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCCCAGATTGTTTGAAACTCCAGGATCTATCCAGTGCCTG  50

seq1  GATATTGGGCTGGGTTTCTTCTTCAAAGGAGTTCTTGGTGTGTTCTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGGCTGGGTTTCTTCTTCAAAGGAGTTCTTGGTGTGTTCTGTAA  100

seq1  ACTTCCCTCAGTGCACACATTACCGCGGTCACCTCCGAATTCAGGATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCAGTGCACACATTACCGCGGTCACCTCCGAATTCAGGATTTG  150

seq1  CTGTTTTACTTTGTAGAGCCCCCTGTTTTAAAGTAGACACGACATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTACTTTGTAGAGCCCCCTGTTTTAAAGTAGACACGACATTTTTT  200

seq1  TGGCCCCGACCGTTAACGCTTTGGGCTTCCGACCCTGCACATTTAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCGACCGTTAACGCTTTGGGCTTCCGACCCTGCACATTTAAGACC  250

seq1  TTGCTTTGATTTGAAATCTATTCTTGTATATTGTGTAAACAAGGCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGATTTGAAATCTATTCTTGTATATTGTGTAAACAAGGCATCCA  300

seq1  ATTTCTTCTTTTTCCCATATGGAGAACTGAGCTTCCAGGGCCATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTTTTTCCCATATGGAGAACTGAGCTTCCAGGGCCATTTTGAA  350

seq1  TACCCTGTCTTTTGCACACACACCCCAAACTCATCTACAAAGGTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTCTTTTGCACACACACCCCAAACTCATCTACAAAGGTTTCTTT  400

seq1  GTCCTGAGCTATGAGCTCACCCTCTGCCCCTATAACATCCTGCATGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCTATGAGCTCACCCTCTGCCCCTATAACATCCTGCATGTGCT  450

seq1  TGCATCTGTTTCTGAGTTCTTCTGTTTACCTCTATGTCAGTTTCTCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTTTCTGAGTTCTTCTGTTTACCTCTATGTCAGTTTCTCTATG  500

seq1  CCAGTGTGCCAGCGCATCATTTACTATCTAGAACAAAGGGATAATAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCCAGCGCATCATTTACTATCTAGAACAAAGGGATAATAATCA  550

seq1  TTTTCAAAGTTAAACTCACAGAGCCTGACACATGTTAAATAATTACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGTTAAACTCACAGAGCCTGACACATGTTAAATAATTACCTGT  600

seq1  TATTACCTAAGTAAGGTATACATTTTAATGCATAAAGTTTTATAGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTAAGTAAGGTATACATTTTAATGCATAAAGTTTTATAGAAAGT  650

seq1  TAGTAAATATTCCTGTTTAAAAAAAAACCACTTTTTGCATTTGATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATATTCCTGTTTAAAAAAAAACCACTTTTTGCATTTGATTTTGT  700

seq1  GTTGCTGTGGTTGTTTAGAGATATACTAAGAGTACCTATTCAGCCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTGGTTGTTTAGAGATATACTAAGAGTACCTATTCAGCCATTAT  750

seq1  CATATTGGGGTTCAGCAAACAGTGCATTAGTATATGAGACCTGCTGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGGGTTCAGCAAACAGTGCATTAGTATATGAGACCTGCTGTGCT  800

seq1  GAACACTTTGAACTAAAGGATATTGGGAGGTCTCTAAGGTGAAGTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTGAACTAAAGGATATTGGGAGGTCTCTAAGGTGAAGTCTCTT  850

seq1  TAGCCTTCCCCTTCCTCCTGTCCCTACAACCTGCTTCTCCCCTAAGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCCCCTTCCTCCTGTCCCTACAACCTGCTTCTCCCCTAAGGGAG  900

seq1  TCACATACAAAAAAAGTGCA-TTTCTCTTTCTCTCAAGATGGGTCACAGG  949
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TCACATACAAAAAAAGTGCATTTTCTCTTTCTCTC-AGATGGGTCACAGG  949

seq1  AGCTAGGCCTCCACTCATCACCAAGAATAAGCAGTAAATCCTAGCAGGAT  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTAGGCCTCCACTCATCACCAAGAATAAGCAGTAAATCCTAGCAAGAT  999

seq1  CCCTTGCTTCATCTGCCCTCAAAGACTATCATCACAGGG-TTCTCTCTC-  1047
       || ||||||||||||||||||||||||||||||||||| |||||  || 
seq2  TCC-TGCTTCATCTGCCCTCAAAGACTATCATCACAGGGCTTCTCCTTCT  1048

seq1  CATCCCATGAAGAAGGAGTGGTACCCAGAGAATCCGAGATGTGTCTGAAC  1097
      ||||||||| ||| | |   ||||| ||||| ||||||||||||||||||
seq2  CATCCCATG-AGATGAA--TGTACCTAGAGATTCCGAGATGTGTCTGAAC  1095

seq1  AAA  1100
      |||
seq2  AAA  1098