BAC Information

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BAC

Clone NameB6Ng01-262K15
Chromosome3 (Build37)
Map Location 59,862,444 - 59,937,177
singlet/doubletdoublet
Overlap geneSucnr1
Upstream geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262K15.bB6Ng01-262K15.g
ACCGA067018GA067019
length1,0731,163
definitionB6Ng01-262K15.b B6Ng01-262K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,862,444 - 59,863,522)(59,936,008 - 59,937,177)
sequence
gaattccagataacctggatccctgttcccagaacatgggcactcatagc
tccatcataaagtgtttcatatgcgctgaaagctgagagtagagtttttt
gcatcagcattgagtcatgtcagaagattcactataacaatagccttttt
tctttaaaatctttttttgaaaatagaatcttctctcatacaatatatcc
caaccaacaggctaccctccttccattcctccttgcttctctctgatccc
tctccttgcactaaatccactcaacctgtttcctcttcagtaaaaagcca
aacagaacaaaacaagatacaagactaggcaaaagccatcataacaagcc
tagacaaagcaacctaactggaggaaaagactcccaagggttagagacca
ctcttaggtctcccataaaactactgaactaacaagccataatatagata
ttgtgtgtgtgtgtgtgtatacaataataacaagcccttataaatatata
tatatatatatatatatatatatatatatatatatatacacacacaggta
gtaagtagcttcaaaatcaaaagccaagggaaaccaaaggatacaaacta
tgcgatgtgcacctgcaggtacaccctgaaccacttcacacacccaaaca
ccattttctttcatcttaggaggagcttcggcctacaaagctttggttat
cccaaacaatttgattatcctatcaactgttggaactcagttttctcatc
tataaaataatagtgaaaggcctggtgaattacttagtgacatgtgttgg
tctcttttatgactacagttcccacacttaagtgtctgtatcagttgctt
tcataactgtgaccttctaaggttacatctgaattgggggatggtttgga
cgagcaccgtataagcgctgcactgaccttgcagacattttgagttctaa
caaggagtttctaatactcatttctgggactttgtggttctcaagtattt
tgatagcctgctgcttcaattgagaaacctcaaattactttcagcattgc
tattttatttcccactattttcc
gaattcaagtagattccctgaagcttccaagaattttttttttaagttta
tatctgtaccaaaatctacactgtaggaagggcagtagactcacatcttt
gaggtcagaataaaaggctggacaccccaaaatgatccagagggatggct
atatagaatggacagagatgtttagagttctattcctagaagacaatcaa
aggaaattttaaaatttgagcttgtggttgtgaaaatagtagctgcgtat
tatcagggctcaaataatagcttatcagaactctacacacgtacaaattt
tatacctttataaattatatccaaaaaccttaaacatcctcctagacctt
cataacttagacttttatatcttcagaccgcaaacactttcttaggcctt
tatattacctttctatatcttaaaacattttaagacactcacaacttatt
aaagtttccatatccttagtcctttttgacttgtatttatatacctaaga
acaccttcttagaccctccacccttacagaaacatttttagccagtcaca
accatgtgacacaagtggttgattactaagaagaagttcatttaaataaa
ggaagagtaaaaaattacactgaaatctgttttgtgagtttatcttttat
aaagaacctggcagtatggtaacctgtctttcttttttgtttctttgttg
ctttccaacaatttttttttaatttactttacattccaatcacatgcccc
tccctcctctcttctcagccccacccttacacatccttccccttactgct
ccctccccttgggtaccaccccaccctgagacatctagtcccagcagaac
taagcacatcatctctcactgatgcccaaccaggcaaggcagttaagggg
aaggggatccaatggcagggaacagatactgagacagccctgctgtgctt
gttaggggacccacatgaaaacccaccttcacattgctacaaacatgtag
ggggcctaggtctaggtctgcattctcctggtgatggccagtctggtgtg
gagccccatgggcccagaatagtgactctgtggggtcttctgatgatgtc
tttggacgcttctgcttgcccacttctattccatcttcatgagaactcca
gaatgtttgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59862444_59863522
seq2: B6Ng01-262K15.b_46_1118

seq1  GAATTCCAGATAACCTGGATCCCTGTTCCCAGAACATGGGCACTCATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAACCTGGATCCCTGTTCCCAGAACATGGGCACTCATAGC  50

seq1  TCCATCATAAAGTGTTTCATATGCGCTGAAAGCTGAGAGTAGAGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATAAAGTGTTTCATATGCGCTGAAAGCTGAGAGTAGAGTTTTTT  100

seq1  GCATCAGCATTGAGTCATGTCAGAAGATTCACTATAACAATAGCCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCATTGAGTCATGTCAGAAGATTCACTATAACAATAGCCTTTTT  150

seq1  TCTTTAAAATCTTTTTTTGAAAATAGAATCTTCTCTCATACAATATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAATCTTTTTTTGAAAATAGAATCTTCTCTCATACAATATATCC  200

seq1  CAACCAACAGGCTACCCTCCTTCCATTCCTCCTTGCTTCTCTCTGATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACAGGCTACCCTCCTTCCATTCCTCCTTGCTTCTCTCTGATCCC  250

seq1  TCTCCTTGCACTAAATCCACTCAACCTGTTTCCTCTTCAGTAAAAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGCACTAAATCCACTCAACCTGTTTCCTCTTCAGTAAAAAGCCA  300

seq1  AACAGAACAAAACAAGATACAAGACTAGGCAAAAGCCATCATAACAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACAAAACAAGATACAAGACTAGGCAAAAGCCATCATAACAAGCC  350

seq1  TAGACAAAGCAACCTAACTGGAGGAAAAGACTCCCAAGGGTTAGAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAGCAACCTAACTGGAGGAAAAGACTCCCAAGGGTTAGAGACCA  400

seq1  CTCTTAGGTCTCCCATAAAACTACTGAACTAACAAGCCATAATATAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGTCTCCCATAAAACTACTGAACTAACAAGCCATAATATAGATA  450

seq1  TTGTGTGTGTGTGTGTGTATACAATAATAACAAGCCCTTATAAATATATA  500
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  TTGTGTGTGTGTGTGTGTATACAATAATAACAAGCCCTTATAA--ATATA  498

seq1  TATATATATATATATATATATATATATATATATATATATACACACACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATACACACACAGG  548

seq1  TAGTAAGTAGCTTCAAAATCAAAAGCCAAGGGAAACCAAAGGATACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTAGCTTCAAAATCAAAAGCCAAGGGAAACCAAAGGATACAAAC  598

seq1  TATGCGATGTGCACCTGCAGGTACACCCTGAACCACTTCACACACCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGATGTGCACCTGCAGGTACACCCTGAACCACTTCACACACCCAAA  648

seq1  CACCATTTTCTTTCATCTTAGGAGGAGCTTCGGCCTACAAAGCTTTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTCTTTCATCTTAGGAGGAGCTTCGGCCTACAAAGCTTTGGTT  698

seq1  ATCCCAAACAATTTGATTATCCTATCAACTGTTGGAACTCAGTTTTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAACAATTTGATTATCCTATCAACTGTTGGAACTCAGTTTTCTCA  748

seq1  TCTATAAAATAATAGTGAAAGGCCTGGTGAATTACTTAGTGACATGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAATAATAGTGAAAGGCCTGGTGAATTACTTAGTGACATGTGTT  798

seq1  GGTCTCTTTTATGACTACAGTTCCCACACTTAAGTGTCTGTATCAGTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTTATGACTACAGTTCCCACACTTAAGTGTCTGTATCAGTTGC  848

seq1  TTTCATAACTGTGACCTTCTAAGGTTACATCTGAATT-GGGGATGGTTTG  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATAACTGTGACCTTCTAAGGTTACATCTGAATTGGGGGATGGTTTG  898

seq1  GACGAGCACCGTATAAGCGCTGCACTGACCTTGCAGACATTTTGAGTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCACCGTATAAGCGCTGCACTGACCTTGCAGACATTTTGAGTTCT  948

seq1  AACAAGGAGTTTCTTAATACTCATTTCTGGGACTTTGTGGTTCTCAAAGG  999
      ||||||||||||| |||||||||||||||||||||||||||||||||  |
seq2  AACAAGGAGTTTC-TAATACTCATTTCTGGGACTTTGTGGTTCTCAA--G  995

seq1  TATTTTGATAGCCTGCTGCTTCAAAATTGAGAAACCTCAAATTACTTTCA  1049
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TATTTTGATAGCCTGCTGCTTC--AATTGAGAAACCTCAAATTACTTTCA  1043

seq1  GCATTTGCTA-TTTATTTCACACTATTTTCC  1079
      ||| |||||| |||||||| |||||||||||
seq2  GCA-TTGCTATTTTATTTCCCACTATTTTCC  1073

seq1: chr3_59936008_59937177
seq2: B6Ng01-262K15.g_65_1227 (reverse)

seq1  CAGTCAAACA-TCTGTGAG-TCTCATGGAAGAATAGGGAATAGAAGTGGG  48
      |||||||||| |||| ||| ||||||    ||| | ||||||||||||||
seq2  CAGTCAAACATTCTG-GAGTTCTCAT----GAAGATGGAATAGAAGTGGG  45

seq1  CAAGCAGGAAGCGT-CAAAGACATCATCAGAAGA-CCCACAGAGTCAACT  96
      |||||| ||||||| ||||||||||||||||||| ||||||||||| |||
seq2  CAAGCA-GAAGCGTCCAAAGACATCATCAGAAGACCCCACAGAGTC-ACT  93

seq1  AATCTGGGCCCATGGGGGCTCACA-CAGACTGGGCCATCAACCAGGGAGA  145
      | |||||||||||||||   |||| |||||| ||||||| |||| |||||
seq2  ATTCTGGGCCCATGGGGCTCCACACCAGACT-GGCCATC-ACCA-GGAGA  140

seq1  ATGCAGGACCTAGACCTAGGCCCCCTACATGTTTGTAGCAAATGTGAAGG  195
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGCA-GACCTAGACCTAGGCCCCCTACATGTTTGTAGC-AATGTGAAGG  188

seq1  TTGGTTTTCATGTGGGTCCCCTAACAAGCACAGCAGGGCTGTCTCAGTAT  245
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCATGTGGGTCCCCTAACAAGCACAGCAGGGCTGTCTCAGTAT  238

seq1  CTGTTCCCTGCCATTGGATCCCCTTCCCCTTAACTGCCTTGCCTGGTTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCTGCCATTGGATCCCCTTCCCCTTAACTGCCTTGCCTGGTTGG  288

seq1  GCATCAGTGAGAGATGATGTGCTTAGTTCTGCTGGGACTAGATGTCTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTGAGAGATGATGTGCTTAGTTCTGCTGGGACTAGATGTCTCAG  338

seq1  GGTGGGGTGGTACCCAAGGGGAGGGAGCAGTAAGGGGAAGGATGTGTAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGTACCCAAGGGGAGGGAGCAGTAAGGGGAAGGATGTGTAAG  388

seq1  GGTGGGGCTGAGAAGAGAGGAGGGAGGGGCATGTGATTGGAATGTAAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCTGAGAAGAGAGGAGGGAGGGGCATGTGATTGGAATGTAAAGT  438

seq1  AAATTAAAAAAAAATTGTTGGAAAGCAACAAAGAAACAAAAAAGAAAGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAATTGTTGGAAAGCAACAAAGAAACAAAAAAGAAAGAC  488

seq1  AGGTTACCATACTGCCAGGTTCTTTATAAAAGATAAACTCACAAAACAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACCATACTGCCAGGTTCTTTATAAAAGATAAACTCACAAAACAGA  538

seq1  TTTCAGTGTAATTTTTTACTCTTCCTTTATTTAAATGAACTTCTTCTTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTAATTTTTTACTCTTCCTTTATTTAAATGAACTTCTTCTTAG  588

seq1  TAATCAACCACTTGTGTCACATGGTTGTGACTGGCTAAAAATGTTTCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACCACTTGTGTCACATGGTTGTGACTGGCTAAAAATGTTTCTGT  638

seq1  AAGGGTGGAGGGTCTAAGAAGGTGTTCTTAGGTATATAAATACAAGTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGAGGGTCTAAGAAGGTGTTCTTAGGTATATAAATACAAGTCAA  688

seq1  AAAGGACTAAGGATATGGAAACTTTAATAAGTTGTGAGTGTCTTAAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTAAGGATATGGAAACTTTAATAAGTTGTGAGTGTCTTAAAATG  738

seq1  TTTTAAGATATAGAAAGGTAATATAAAGGCCTAAGAAAGTGTTTGCGGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATATAGAAAGGTAATATAAAGGCCTAAGAAAGTGTTTGCGGTC  788

seq1  TGAAGATATAAAAGTCTAAGTTATGAAGGTCTAGGAGGATGTTTAAGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATATAAAAGTCTAAGTTATGAAGGTCTAGGAGGATGTTTAAGGTT  838

seq1  TTTGGATATAATTTATAAAGGTATAAAATTTGTACGTGTGTAGAGTTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATAATTTATAAAGGTATAAAATTTGTACGTGTGTAGAGTTCTG  888

seq1  ATAAGCTATTATTTGAGCCCTGATAATACGCAGCTACTATTTTCACAACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATTATTTGAGCCCTGATAATACGCAGCTACTATTTTCACAACC  938

seq1  ACAAGCTCAAATTTTAAAATTTCCTTTGATTGTCTTCTAGGAATAGAACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCAAATTTTAAAATTTCCTTTGATTGTCTTCTAGGAATAGAACT  988

seq1  CTAAACATCTCTGTCCATTCTATATAGCCATCCCTCTGGATCATTTTGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATCTCTGTCCATTCTATATAGCCATCCCTCTGGATCATTTTGGG  1038

seq1  GTGTCCAGCCTTTTATTCTGACCTCAAAGATGTGAGTCTACTGCCCTTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGCCTTTTATTCTGACCTCAAAGATGTGAGTCTACTGCCCTTCC  1088

seq1  TACAGTGTAGATTTTGGTACAGATATAAACTTAAAAAAAAAATTCTTGGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTAGATTTTGGTACAGATATAAACTTAAAAAAAAAATTCTTGGA  1138

seq1  AGCTTCAGGGAATCTACTTGAATTC  1170
      |||||||||||||||||||||||||
seq2  AGCTTCAGGGAATCTACTTGAATTC  1163