BAC Information

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BAC

Clone NameB6Ng01-266E23
Chromosome3 (Build37)
Map Location 99,559,682 - 99,687,226
singlet/doubletdoublet
Overlap genenone
Upstream geneHsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266E23.bB6Ng01-266E23.g
ACCGA069737GA069738
length1,1491,109
definitionB6Ng01-266E23.b B6Ng01-266E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,559,682 - 99,560,837)(99,686,136 - 99,687,226)
sequence
gaattctctgcccacacactgagtgtctggcttccagatggatcttgggc
acacactcatttttataatttctccaccctcatcatctattcatttgtct
ccctcccttcagaggaatttaaagatgggctttgttctgcattgcctcat
ttctccttcttttagctttcagtgaccagcattggcggatcatccttttg
cttggaataaaggagaaaatgaaatctagctggtctactcagcaccattc
agtctggacacctggtagtgtctgtaggtctggggcagagtctagcttgg
ccagttaaaataatagacactcaaaccaataaagatttctgtgtgttgaa
cttcagttatcttcccagtgatctacacatcaaataagctcactttgaag
catatcacagaacaggtaagttccattatgacagaccaggaaaaccttga
ttaaaaacctctgtctgacttaaggatcgtgtctctacatacttttgggg
gctttgtaaatactttgaaagtattttaaagggatttcaatgtttctctc
caatgaaaacctatcaacatattcagaaagcagcacccatctattcgtga
accccaggtcagagtccatgaggctaggaacaggtctgtcttctgttatc
atttctatcattgagataagatacctgtgctagatggagggagatgccta
agtggacaccagtacatctttgggtacattccacatttcactttccctgt
ccatcaaaagcaaaacagagatggccagttgcctctatgagtgcatgctg
taggaatgtgtgaaaggtgactgaaaggacaaggaagagctgctgctttc
tgggagctgagtgctggtccttgcacacactgtatgtatttcaggcaaaa
actccagaacttaaattgtatctagagagtatgaagtggaaggtgaattg
ttggttcttgtgtataagctgatggaagaaggaccctatccctgaattcc
ctttgccctcagtactatggcagactgtcataaacacccagtgtctccca
tgaaaggaataaacatatacttgccccattgtcaagaattagctactcct
gcttgaactagaacatatccgtgttaccttagactacatctaagatcat
gaattcctttgttaatgtgttacctcactcaggatgatgccctccaggtc
catccatttggctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtagatgtaccatattttctgtatccattcctctgtt
gaggggtatctggtttctttccagcttctgtctattataaataaggctgc
tatgaacatagtggagcatgtgtccttcttaccggttgggacatcttctg
gatatatgcccaggagaggtattgcgggatcctccggtagtactatgtcc
aattttctgaggaactgccagactgattaccagagtggttgtacaagcct
gcaatcccaccaaccaatggaatagaactgaagacccagaaatgaaccca
cacacctagagtggttttttattacctcagccagccaagggtgacaggct
ctgcctgtggcctgttgctgtgctctgtccagcacaacctacatgatcgc
tgcttctgactctgtctttgagaaagaaatcatgagtgctgggaccatgg
agtgaatacttggtatgagttcagactttcaatggcttccaaagcctata
tgctaaggctctagtctccagatggtggcgctattgagagggggtaaaaa
gttaggaggcagagcccagtggggtctttgggaatgggttatcgggacct
ggtcttcttcctgtctctcattgcttcttctattacctgcatccgactgt
gacattcctctctgccttgtcacaggctgaaaaggactggcccaagtgac
cagaaagtttctgacaccatgtggcaaaataaatcctgaggatgcttatc
tcaagtgctttgtcacagagaccgggaagctgcctggtcagtggtaacag
ctgatccccgttgtcctattccaggtttgctgatcgcattccattttaac
ttttgttcatacttgtactagttgagaaagcatcccctccttttggatac
aagatactgaagaaaaatccttcttcaaaataatctttcacattaaaaag
tatttataatatggtatacctaatttatatatggaattatatcaaatata
gtaaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99559682_99560837
seq2: B6Ng01-266E23.b_48_1196

seq1  GAATTCTCTGCCCACACACTGAGTGTCTGGCTTCCAGATGGATCTTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCACACACTGAGTGTCTGGCTTCCAGATGGATCTTGGGC  50

seq1  ACACACTCATTTTTATAATTTCTCCACCCTCATCATCTATTCATTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCATTTTTATAATTTCTCCACCCTCATCATCTATTCATTTGTCT  100

seq1  CCCTCCCTTCAGAGGAATTTAAAGATGGGCTTTGTTCTGCATTGCCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTCAGAGGAATTTAAAGATGGGCTTTGTTCTGCATTGCCTCAT  150

seq1  TTCTCCTTCTTTTAGCTTTCAGTGACCAGCATTGGCGGATCATCCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCTTTTAGCTTTCAGTGACCAGCATTGGCGGATCATCCTTTTG  200

seq1  CTTGGAATAAAGGAGAAAATGAAATCTAGCTGGTCTACTCAGCACCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATAAAGGAGAAAATGAAATCTAGCTGGTCTACTCAGCACCATTC  250

seq1  AGTCTGGACACCTGGTAGTGTCTGTAGGTCTGGGGCAGAGTCTAGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGACACCTGGTAGTGTCTGTAGGTCTGGGGCAGAGTCTAGCTTGG  300

seq1  CCAGTTAAAATAATAGACACTCAAACCAATAAAGATTTCTGTGTGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAAAATAATAGACACTCAAACCAATAAAGATTTCTGTGTGTTGAA  350

seq1  CTTCAGTTATCTTCCCAGTGATCTACACATCAAATAAGCTCACTTTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTATCTTCCCAGTGATCTACACATCAAATAAGCTCACTTTGAAG  400

seq1  CATATCACAGAACAGGTAAGTTCCATTATGACAGACCAGGAAAACCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACAGAACAGGTAAGTTCCATTATGACAGACCAGGAAAACCTTGA  450

seq1  TTAAAAACCTCTGTCTGACTTAAGGATCGTGTCTCTACATACTTTTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCTCTGTCTGACTTAAGGATCGTGTCTCTACATACTTTTGGGG  500

seq1  GCTTTGTAAATACTTTGAAAGTATTTTAAAGGGATTTCAATGTTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAATACTTTGAAAGTATTTTAAAGGGATTTCAATGTTTCTCTC  550

seq1  CAATGAAAACCTATCAACATATTCAGAAAGCAGCACCCATCTATTCGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAACCTATCAACATATTCAGAAAGCAGCACCCATCTATTCGTGA  600

seq1  ACCCCAGGTCAGAGTCCATGAGGCTAGGAACAGGTCTGTCTTCTGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGTCAGAGTCCATGAGGCTAGGAACAGGTCTGTCTTCTGTTATC  650

seq1  ATTTCTATCATTGAGATAAGATACCTGTGCTAGATGGAGGGAGATGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCATTGAGATAAGATACCTGTGCTAGATGGAGGGAGATGCCTA  700

seq1  AGTGGACACCAGTACATCTTTGGGTACATTCCACATTTCACTTTCCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACACCAGTACATCTTTGGGTACATTCCACATTTCACTTTCCCTGT  750

seq1  CCATCAAAAGCAAAACAGAGATGGCCAGTTGCCTCTATGAGTGCATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAAGCAAAACAGAGATGGCCAGTTGCCTCTATGAGTGCATGCTG  800

seq1  TAGGAATGTGTGAAAGGTGACTGAAAGGACAAGGAAGAGCTGCTGCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTGTGAAAGGTGACTGAAAGGACAAGGAAGAGCTGCTGCTTTC  850

seq1  TGGGAGCTGAGTGCTGGTCCTTGCACACACTGTATGTATTTCAGGCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGAGTGCTGGTCCTTGCACACACTGTATGTATTTCAGGCAAAA  900

seq1  ACTCCAGAACTTAAATTGTATCTAAGAGAGTATGAAGTGGAAGGTGAATT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTCCAGAACTTAAATTGTATCT-AGAGAGTATGAAGTGGAAGGTGAATT  949

seq1  GTTGGTTCTTGTGTATAAGCTGATGGAAGAAGGGACCCTATCCCTGAATT  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTGGTTCTTGTGTATAAGCTGATGGAAGAA-GGACCCTATCCCTGAATT  998

seq1  CCCTTTGCCCTCAGTACTATGGCAGACTGTCATAAACACCCAGTGTTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  CCCTTTGCCCTCAGTACTATGGCAGACTGTCATAAACACCCAGTGT--CT  1046

seq1  CCCATGAAA-GAAT-AACATATACTTGCCCCATTGTCAAG-ATTAGCTAC  1097
      ||||||||| |||| ||||||||||||||||||||||||| |||||||| 
seq2  CCCATGAAAGGAATAAACATATACTTGCCCCATTGTCAAGAATTAGCTA-  1095

seq1  CTCCCTTGCTTTGACCAAGACATTATCCGTGTTA-CTTAGAACTAACATC  1146
      ||||  ||| |||| | |||   ||||||||||| ||||| ||| |||||
seq2  CTCC--TGC-TTGAACTAGAACATATCCGTGTTACCTTAG-ACT-ACATC  1140

seq1  TTAAGATCAT  1156
       |||||||||
seq2  -TAAGATCAT  1149

seq1: chr3_99686136_99687226
seq2: B6Ng01-266E23.g_92_1177 (reverse)

seq1  TGTATTTTACTATATTTTAATATAATACCATATTATAAA-TAAGTATA-C  48
      |||| ||||||||| ||| ||||||| ||||| |||||| || ||||| |
seq2  TGTA-TTTACTATA-TTTGATATAATTCCATA-TATAAATTAGGTATACC  47

seq1  ATATTATAAATACTTTTTTAATTGTGAAAGATTATTTTTGAGAAGGGTTT  98
      ||||||||||||||||||  | ||||||||||||||||  |||| || ||
seq2  ATATTATAAATACTTTTT--AATGTGAAAGATTATTTTGAAGAA-GGATT  94

seq1  TTTCTTCAGTATC-TGTATCAAAAGGGAGGGGATTGCTTTCTTCAACTAG  147
      ||||||||||||| |||||| ||| |||||||| ||||||| ||||||||
seq2  TTTCTTCAGTATCTTGTATCCAAAAGGAGGGGA-TGCTTTC-TCAACTAG  142

seq1  TACAAGTTATGAACAAAAGTTAAAATGGAATGCGATCAGCAAACCTGGAA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAG-TATGAACAAAAGTTAAAATGGAATGCGATCAGCAAACCTGGAA  191

seq1  TAGGACAACGGGGATCAGCTGTTACCACTGACCAGGCAGCTT-CCGGTCT  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGGACAACGGGGATCAGCTGTTACCACTGACCAGGCAGCTTCCCGGTCT  241

seq1  CTGTGACAAAGCACTTGAGATAAGCATCCTCAGGATTTATTTTGCCACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAAAGCACTTGAGATAAGCATCCTCAGGATTTATTTTGCCACAT  291

seq1  GGTGTCAGAAACTTTCTGGTCACTTGGGCCAGTCCTTTTCAGCCTGTGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGAAACTTTCTGGTCACTTGGGCCAGTCCTTTTCAGCCTGTGAC  341

seq1  AAGGCAGAGAGGAATGTCACAGTCGGATGCAGGTAATAGAAGAAGCAATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGAGGAATGTCACAGTCGGATGCAGGTAATAGAAGAAGCAATG  391

seq1  AGAGACAGGAAGAAGACCAGGTCCCGATAACCCATTCCCAAAGACCCCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGAAGAAGACCAGGTCCCGATAACCCATTCCCAAAGACCCCAC  441

seq1  TGGGCTCTGCCTCCTAACTTTTTACCCCCTCTCAATAGCGCCACCATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGCCTCCTAACTTTTTACCCCCTCTCAATAGCGCCACCATCTG  491

seq1  GAGACTAGAGCCTTAGCATATAGGCTTTGGAAGCCATTGAAAGTCTGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGAGCCTTAGCATATAGGCTTTGGAAGCCATTGAAAGTCTGAAC  541

seq1  TCATACCAAGTATTCACTCCATGGTCCCAGCACTCATGATTTCTTTCTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAAGTATTCACTCCATGGTCCCAGCACTCATGATTTCTTTCTCA  591

seq1  AAGACAGAGTCAGAAGCAGCGATCATGTAGGTTGTGCTGGACAGAGCACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGTCAGAAGCAGCGATCATGTAGGTTGTGCTGGACAGAGCACA  641

seq1  GCAACAGGCCACAGGCAGAGCCTGTCACCCTTGGCTGGCTGAGGTAATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGCCACAGGCAGAGCCTGTCACCCTTGGCTGGCTGAGGTAATAA  691

seq1  AAAACCACTCTAGGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTCTAGGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCC  741

seq1  ATTGGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGTAATCAGTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGTAATCAGTCTG  791

seq1  GCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATAC  841

seq1  CTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACA  891

seq1  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAGAAGCTGGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGACAGAAGCTGGAA  941

seq1  AGAAACCAGATACCCCTCAACAGAGGAATGGATACAGAAAATATGGTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGATACCCCTCAACAGAGGAATGGATACAGAAAATATGGTACA  991

seq1  TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  1041

seq1  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG  1086