BAC Information

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BAC

Clone NameB6Ng01-267A18
Chromosome3 (Build37)
Map Location 95,565,736 - 95,710,676
singlet/doubletdoublet
Overlap gene4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14
Upstream geneCgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2
Downstream geneAnp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267A18.bB6Ng01-267A18.g
ACCGA070282GA070283
length718754
definitionB6Ng01-267A18.b B6Ng01-267A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,565,736 - 95,566,450)(95,709,923 - 95,710,676)
sequence
gaattctgaggattcttgctgtacctcacagagatcacagctcccgggct
ctgctggacagcctttcttcaggaaaaaaaaaaagtggtttgctccaaga
caaaaggattgtcttcaaccacaggccacccttccctccattccctaccc
accccactgaggaatccaaagccctccttttctttcctctgtagagtcct
gtgtgaacttgctggaattccttcaaaagctcaacacactggtgcagcac
acctagctggaggtcctcagcgtgtgccccggtgcaacacactaccagaa
aacctagtgtgcagtgtctgcttcccagatacaaagacagaaacattcca
agatccacgattgtcttccccttagggattcgatgcagaaacacaaacaa
agtttttaatgcagggaagaaagctctcccctccacagcaatgactcagg
caactcaaatgagggtgagggtgagggtgagaggtgggtactgaaagcac
caagatgctatttgctgagggataacatggattcctcaggacgctgcttt
ctcagtaccccctgcctctaagacacgcctacgcagtatcatgtaaggat
accacccaatcgcctctgaaacagcaagaacaggatgaatacaggactgt
gatggggtgagggtagatagaaactataaagacccaatatttttcctttt
ccctaatagttaatgttt
gaattcccggagaggctgctggttccggagcctaagtgttgactcgggac
taagactttttttttaaggacgcattttatttttttaatggttttatttt
atgtgcattggtgatttgcctgcatgtatgtctgtgtgagaatatccggt
tccttggaactagagtcacagacagttgagagctgccaggtgggtgctga
aaatcgaacccattcctctggaaaagcagcgagagctattaaccactgag
ccatctctccagcaccagggctaagactcctttgaagcagtattttttat
tttttattttttattttttgaagcagtattcaaaagtgtaggcaaagtcc
ccaaactctcagcaccaactgctgtccagaaggaatcccaagttttaaaa
attcgtagagaagccaagaggtggcgccaggcgagacgcacttcctggga
ggctgaaagtcggtcgtagatgctgcaggggagctctgtcctgatagggg
ttattctatccaaacctcctctttcctaccttgtgaaatatgtgtcaatt
ctcctttcacccccaccccacccccctcttaactttccggacaccaaaga
aatcttaacttgtattcacatcttttattcttcctagatgggactggatg
aggctttggaagaactttaagacggaaacttttttttaggggatgaagta
ttcgcaaagcgataaaacgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95565736_95566450
seq2: B6Ng01-267A18.b_48_765

seq1  GAATTCTGAGGATTCTTGCTGTACCTCACAGAGATCACAGCTCCCGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGATTCTTGCTGTACCTCACAGAGATCACAGCTCCCGGGCT  50

seq1  CTGCTGGACAGCCTTTCTTCAGGAAAAAAAAAAAGTGGTTTGCTCCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACAGCCTTTCTTCAGGAAAAAAAAAAAGTGGTTTGCTCCAAGA  100

seq1  CAAAAGGATTGTCTTCAACCACAGGCCACCCTTCCCTCCATTCCCTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGATTGTCTTCAACCACAGGCCACCCTTCCCTCCATTCCCTACCC  150

seq1  ACCCCACTGAGGAATCCAAAGCCCTCCTTTTCTTTCCTCTGTAGAGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTGAGGAATCCAAAGCCCTCCTTTTCTTTCCTCTGTAGAGTCCT  200

seq1  GTGTGAACTTGCTGGAATTCCTTCAAAAGCTCAACACACTGGTGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACTTGCTGGAATTCCTTCAAAAGCTCAACACACTGGTGCAGCAC  250

seq1  ACCTAGCTGGAGGTCCTCAGCGTGTGCCCCGGTGCAACACACTACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTGGAGGTCCTCAGCGTGTGCCCCGGTGCAACACACTACCAGAA  300

seq1  AACCTAGTGTGCAGTGTCTGCTTCCCAGATACAAAGACAGAAACATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTGTGCAGTGTCTGCTTCCCAGATACAAAGACAGAAACATTCCA  350

seq1  AGATCCACGATTGTCTTCCCCTTAGGGATTCGATGCAGAAACACAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACGATTGTCTTCCCCTTAGGGATTCGATGCAGAAACACAAACAA  400

seq1  AGTTTTTAATGCAGGGAAGAAAGCTCTCCCCTCCACAGCAATGACTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAATGCAGGGAAGAAAGCTCTCCCCTCCACAGCAATGACTCAGG  450

seq1  CAACTCAAATGAGGGTGAGGGTGAGGGTGAGAGGTGGGTACTGAAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAATGAGGGTGAGGGTGAGGGTGAGAGGTGGGTACTGAAAGCAC  500

seq1  CAAGATGCTATTTGCTGAGGGATAACATGGATTCCTCAGGACGCTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCTATTTGCTGAGGGATAACATGGATTCCTCAGGACGCTGCTTT  550

seq1  CTCAGTACCCCCTGCCTCTAAGACACGCCTACGCAGTATCATGTAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACCCCCTGCCTCTAAGACACGCCTACGCAGTATCATGTAAGGAT  600

seq1  ACCACCCAATCGCCTCTGAAACAGCAAGAACAGGATGAATACAGGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAATCGCCTCTGAAACAGCAAGAACAGGATGAATACAGGACTGT  650

seq1  GAT-GGGTGAGGGTAGAAAGAAACTATAAAGACACAATATTTT--CCTTT  697
      ||| ||||||||||||| ||||||||||||||| |||||||||  | |||
seq2  GATGGGGTGAGGGTAGATAGAAACTATAAAGACCCAATATTTTTCCTTTT  700

seq1  CTCTAATAGTTAATGTTT  715
      | ||||||||||||||||
seq2  CCCTAATAGTTAATGTTT  718

seq1: chr3_95709923_95710676
seq2: B6Ng01-267A18.g_69_822 (reverse)

seq1  CACACACACACACACACACACACACACACACACAACGTTTTATCGCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAACGTTTTATCGCTTTG  50

seq1  CGAATACTTCATCCCCTAAAAAAAAGTTTCCGTCTTAAAGTTCTTCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATACTTCATCCCCTAAAAAAAAGTTTCCGTCTTAAAGTTCTTCCAAA  100

seq1  GCCTCATCCAGTCCCATCTAGGAAGAATAAAAGATGTGAATACAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCCAGTCCCATCTAGGAAGAATAAAAGATGTGAATACAAGTTAA  150

seq1  GATTTCTTTGGTGTCCGGAAAGTTAAGAGGGGGGTGGGGTGGGGGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTGGTGTCCGGAAAGTTAAGAGGGGGGTGGGGTGGGGGTGAAA  200

seq1  GGAGAATTGACACATATTTCACAAGGTAGGAAAGAGGAGGTTTGGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTGACACATATTTCACAAGGTAGGAAAGAGGAGGTTTGGATAGA  250

seq1  ATAACCCCTATCAGGACAGAGCTCCCCTGCAGCATCTACGACCGACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCTATCAGGACAGAGCTCCCCTGCAGCATCTACGACCGACTTTC  300

seq1  AGCCTCCCAGGAAGTGCGTCTCGCCTGGCGCCACCTCTTGGCTTCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCAGGAAGTGCGTCTCGCCTGGCGCCACCTCTTGGCTTCTCTAC  350

seq1  GAATTTTTAAAACTTGGGATTCCTTCTGGACAGCAGTTGGTGCTGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAAAACTTGGGATTCCTTCTGGACAGCAGTTGGTGCTGAGAGT  400

seq1  TTGGGGACTTTGCCTACACTTTTGAATACTGCTTCAAAAAATAAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACTTTGCCTACACTTTTGAATACTGCTTCAAAAAATAAAAAATA  450

seq1  AAAAATAAAAAATACTGCTTCAAAGGAGTCTTAGCCCTGGTGCTGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAAATACTGCTTCAAAGGAGTCTTAGCCCTGGTGCTGGAGAG  500

seq1  ATGGCTCAGTGGTTAATAGCTCTCGCTGCTTTTCCAGAGGAATGGGTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGGTTAATAGCTCTCGCTGCTTTTCCAGAGGAATGGGTTCG  550

seq1  ATTTTCAGCACCCACCTGGCAGCTCTCAACTGTCTGTGACTCTAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGCACCCACCTGGCAGCTCTCAACTGTCTGTGACTCTAGTTCCA  600

seq1  AGGAACCGGATATTCTCACACAGACATACATGCAGGCAAATCACCAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCGGATATTCTCACACAGACATACATGCAGGCAAATCACCAATGC  650

seq1  ACATAAAATAAAACCATTAAAAAAATAAAATGCGTCCTTAAAAAAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAAACCATTAAAAAAATAAAATGCGTCCTTAAAAAAAAAGT  700

seq1  CTTAGTCCCGAGTCAACACTTAGGCTCCGGAACCAGCAGCCTCTCCGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCCCGAGTCAACACTTAGGCTCCGGAACCAGCAGCCTCTCCGGGA  750

seq1  ATTC  754
      ||||
seq2  ATTC  754