BAC Information

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BAC

Clone NameB6Ng01-267D09
Chromosome3 (Build37)
Map Location 131,558,719 - 131,735,612
singlet/doubletdoublet
Overlap geneOlfr375-ps1
Upstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267D09.bB6Ng01-267D09.g
ACCGA070403GA070404
length1,081492
definitionB6Ng01-267D09.b B6Ng01-267D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,734,549 - 131,735,612)(131,558,719 - 131,559,216)
sequence
gaattccagggctgggaggcaagagtgggtaggttgttgggtgggggaac
accctcatagaagcagggggatgggagatgggataggggatttcaggagc
agggggggaccaggaaagggaataacatttgaaatgtaaataaagaaaat
atccaataaagagagagagtctaacttgaggactataacagatgtgggca
tctaacagaggcaaaccaaagctcagacaagttagcctacttgtacttcc
aaagcaaatattgattgattggtgtataatttatttagacatggtctcac
atagcctaggctggcttcaagcttcctaggtagctgaaaatgacactgag
cttctaatcctcctgtctcccccatgccccagtgctgagatggctggtgt
gtaccaccatgtcctatttatatggtgctagggatcagacccagggctct
gtgaatgctaggctagcgctcttccaactgagctaaagttctagccctca
caactatacttttggaaaacatgatagctaaacttttagagggtaatatc
attaggtgcaacacatcctggtataaaatacacagtgctatactgtctgt
gttcatgctcttgtctgtccttctggctccttcaaccccaagaggtgctt
tacctctctgaagcctctcctctgcatcgtcctttgtcaccatggcatag
gctcattcctttgccatctctgtggttcactctctaaccagactttaatg
ttttttgtccttagctagatggggtagctggcacatagacgatatgtcat
gtttaggaaacctaacttaatcctcttcaaatatactcaagaaaactggt
tttgtgcttttcttgactactgattcatgatctccacatctgttactttg
aaatgggtttttataagataatttccattatctttccgtgacaaagcatc
taacacacgcctaacactgattggattagccccccttacctggctctttc
tgtggtttgggcacttgaagactccttccaccttttcctcatcctcggtg
aatatgaactcaccctttctgtcccttttct
agaggctattctggatgcaaaggaattggtgtcagttcagagccaggatc
taacaaacccctggaaccaattatttctcccttcccaaggcaagggtcac
actggaaacagctgaccatggggaaaggctgtgagggtgcttagcagtgt
acattttgggcgctagagtcaaaatttatgtatttatatattgattgtat
atcttgctactttaataaaagtgattagcagttctaaatatttctggtga
aatcattaagatcttttaaagatagaattaagctctctacaaatagggat
aatttgacttcttcctttcttagttgcatatcttttatgtttttcttttt
ctttattgtgctaaaatttcaagcattatattgtttggaatgaagacagt
ggccatccttgctctgttcttgattgggagctgttttaatttttcccatt
tagaaaaatgctggctaggtatatggtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131734549_131735612
seq2: B6Ng01-267D09.b_47_1127 (reverse)

seq1  AGAAAA-GGACAGAAA-GGTG-TTTCTTATTCAC--AGGAATTGAG--AA  43
      |||||| ||||||||| ||||  ||| |||||||  ||||  ||||  ||
seq2  AGAAAAGGGACAGAAAGGGTGAGTTCATATTCACCGAGGA--TGAGGAAA  48

seq1  AGATG--AAGAGATCTCAAGTG-CCAAACCACAAGAAAG-GCAAGATAA-  88
      || ||  | |||   ||||||| ||||||||| |||||| || || ||| 
seq2  AGGTGGAAGGAGTCTTCAAGTGCCCAAACCAC-AGAAAGAGCCAGGTAAG  97

seq1  GGGGGCT-ATCC-ATCAGTGTTA-GCGTGTGTTAGGATGCTTTGTCACAG  135
      ||||||| |||| |||||||||| |||||||||| ||||||||||||| |
seq2  GGGGGCTAATCCAATCAGTGTTAGGCGTGTGTTA-GATGCTTTGTCACGG  146

seq1  AAAGATAAT-GAAATTATCTTTATAAAAACCCATTTCAAAGTAACAGATG  184
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGATAATGGAAATTATC-TTATAAAAACCCATTTCAAAGTAACAGATG  195

seq1  TTGAGATCATAGAATCAGTAGTAAAGAAAAGCACAAAA-CAGTTTTACTG  233
      | |||||||| ||||||||||| ||||||||||||||| |||||||  ||
seq2  TGGAGATCAT-GAATCAGTAGTCAAGAAAAGCACAAAACCAGTTTTCTTG  244

seq1  AGTATATTTGAAGAGGATTAAGTTAGTTTTC--TAACATGACATATCGTC  281
      |||||||||||||||||||||||||| ||||   ||||||||||||||||
seq2  AGTATATTTGAAGAGGATTAAGTTAGGTTTCCTAAACATGACATATCGTC  294

seq1  TATGTGCCAGCTA-CCCATCTAGCT-AGGAC-AAAAACATT-AAGTCTGG  327
      ||||||||||||| ||||||||||| ||||| ||||||||| ||||||||
seq2  TATGTGCCAGCTACCCCATCTAGCTAAGGACAAAAAACATTAAAGTCTGG  344

seq1  TTAGAGAGTGAACCACAGAGATGGCAAAGGAATGAGCCTATGCCATGGTG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGTGAACCACAGAGATGGCAAAGGAATGAGCCTATGCCATGGTG  394

seq1  ACAAAGGACGATGCAGAGGAGAGGCTTCAGAGAGGTAAAGCACCTCTTGG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGACGATGCAGAGGAGAGGCTTCAGAGAGGTAAAGCACCTCTTGG  444

seq1  GGTTGAAGGAGCCAGAAGGACAGACAAGAGCATGAACACAGACAGTATAG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGGAGCCAGAAGGACAGACAAGAGCATGAACACAGACAGTATAG  494

seq1  CACTGTGTATTTTATACCAGGATGTGTTGCACCTAATGATATTACCCTCT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTATTTTATACCAGGATGTGTTGCACCTAATGATATTACCCTCT  544

seq1  AAAAGTTTAGCTATCATGTTTTCCAAAAGTATAGTTGTGAGGGCTAGAAC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTAGCTATCATGTTTTCCAAAAGTATAGTTGTGAGGGCTAGAAC  594

seq1  TTTAGCTCAGTTGGAAGAGCGCTAGCCTAGCATTCACAGAGCCCTGGGTC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCAGTTGGAAGAGCGCTAGCCTAGCATTCACAGAGCCCTGGGTC  644

seq1  TGATCCCTAGCACCATATAAATAGGACATGGTGGTACACACCAGCCATCT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTAGCACCATATAAATAGGACATGGTGGTACACACCAGCCATCT  694

seq1  CAGCACTGGGGCATGGGGGAGACAGGAGGATTAGAAGCTCAGTGTCATTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGGCATGGGGGAGACAGGAGGATTAGAAGCTCAGTGTCATTT  744

seq1  TCAGCTACCTAGGAAGCTTGAAGCCAGCCTAGGCTATGTGAGACCATGTC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACCTAGGAAGCTTGAAGCCAGCCTAGGCTATGTGAGACCATGTC  794

seq1  TAAATAAATTATACACCAATCAATCAATATTTGCTTTGGAAGTACAAGTA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTATACACCAATCAATCAATATTTGCTTTGGAAGTACAAGTA  844

seq1  GGCTAACTTGTCTGAGCTTTGGTTTGCCTCTGTTAGATGCCCACATCTGT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTGTCTGAGCTTTGGTTTGCCTCTGTTAGATGCCCACATCTGT  894

seq1  TATAGTCCTCAAGTTAGACTCTCTCTCTTTATTGGATATTTTCTTTATTT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCTCAAGTTAGACTCTCTCTCTTTATTGGATATTTTCTTTATTT  944

seq1  ACATTTCAAATGTTATTCCCTTTCCTGGTCCCCCCCTGCTCCTGAAATCC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAATGTTATTCCCTTTCCTGGTCCCCCCCTGCTCCTGAAATCC  994

seq1  CCTATCCCATCTCCCATCCCCCTGCTTCTATGAGGGTGTTCCCCCACCCA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCATCTCCCATCCCCCTGCTTCTATGAGGGTGTTCCCCCACCCA  1044

seq1  ACAACCTACCCACTCTTGCCTCCCAGCCCTGGAATTC  1064
      |||||||||||||||||||||||||||||||||||||
seq2  ACAACCTACCCACTCTTGCCTCCCAGCCCTGGAATTC  1081

seq1: chr3_131558719_131559216
seq2: B6Ng01-267D09.g_68_565

seq1  GAATTCAGAGGCTATTCTGGATGCAAAGGAATTGGTGTCAGTTCAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCTATTCTGGATGCAAAGGAATTGGTGTCAGTTCAGAGCC  50

seq1  AGGATCTAACAAACCCCTGGAACCAATTATTTCTCCCTTCCCAAGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAACAAACCCCTGGAACCAATTATTTCTCCCTTCCCAAGGCAAG  100

seq1  GGTCACACTGGAAACAGCTGACCATGGGGAAAGGCTGTGAGGGTGCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACTGGAAACAGCTGACCATGGGGAAAGGCTGTGAGGGTGCTTAG  150

seq1  CAGTGTACATTTTGGGCGCTAGAGTCAAAATTTATGTATTTATATATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACATTTTGGGCGCTAGAGTCAAAATTTATGTATTTATATATTGA  200

seq1  TTGTATATCTTGCTACTTTAATAAAAGTGATTAGCAGTTCTAAATATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATCTTGCTACTTTAATAAAAGTGATTAGCAGTTCTAAATATTTC  250

seq1  TGGTGAAATCATTAAGATCTTTTAAAGATAGAATTAAGCTCTCTACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATCATTAAGATCTTTTAAAGATAGAATTAAGCTCTCTACAAAT  300

seq1  AGGGATAATTTGACTTCTTCCTTTCTTAGTTGCATATCTTTTATGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAATTTGACTTCTTCCTTTCTTAGTTGCATATCTTTTATGTTTTT  350

seq1  CTTTTTCTTTATTGTGCTAAAATTTCAAGCATTATATTGTTTGGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTATTGTGCTAAAATTTCAAGCATTATATTGTTTGGAATGAA  400

seq1  GACAGTGGCCATCCTTGCTCTGTTCTTGATTGGGAGCTGTTTTAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGCCATCCTTGCTCTGTTCTTGATTGGGAGCTGTTTTAATTTTT  450

seq1  CCCATTTAGAAAAATGCTGGCTAGGTATATGGTGTGTGTGTGTGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAGAAAAATGCTGGCTAGGTATATGGTGTGTGTGTGTGTGTG  498