MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-269E13
Chromosome	3 (Build37)
Map Location	128,528,579 - 128,618,678
singlet/doublet	doublet
Overlap gene	LOC100043393
Upstream gene	BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream gene	EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b
Link	Open Mouse BAC browser

Click to get alignment info.

name	BC002199 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211556 MGI:2384822
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730508B09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70617 MGI:1917867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043382 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043382
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG668828 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668828 MGI:3646181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100043393 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043393
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG668831 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668831 MGI:3643269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 63 ESTs, 6 Proteins

name	Pitx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18741 MGI:109340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Enpep (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13809 MGI:106645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043415 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043415
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC435755 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 18 Proteins

name	LOC668840 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668840
definition	note : 60S ribosomal protein L7a pseudogene pseudo : _no_value

name	Elovl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170439 MGI:2156528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043758 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043758
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Egf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13645 MGI:95290
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm421 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242235 MGI:2685267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Rrh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20132 MGI:1097709
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nola1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68147 MGI:1930948
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12630 MGI:105937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pla2g12a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66350 MGI:1913600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Casp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12368 MGI:1312921
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc109b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66815 MGI:1914065
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC002199 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109659852 GeneID:211556 MGI:2384822
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC002199 transcript_id : NM_145964.2

name	5730508B09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364568 GeneID:70617 MGI:1917867
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730508B09 gene transcript_id : NM_027482.2

name	EG668831 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251481 GeneID:668831 MGI:3643269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 63 ESTs, 6 Proteins product : predicted gene, EG668831 transcript_id : XM_001003884.2

name	Pitx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109948273 GeneID:18741 MGI:109340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired-like homeodomain transcription factor 2 transcript_id : NM_011098.3

name	Pitx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109948276 GeneID:18741 MGI:109340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired-like homeodomain transcription factor 2 transcript_id : NM_001042504.1

name	Pitx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109948274 GeneID:18741 MGI:109340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired-like homeodomain transcription factor 2 transcript_id : NM_001042502.1

name	Enpep (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286800 GeneID:13809 MGI:106645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamyl aminopeptidase transcript_id : NM_007934.3

name	LOC100043415 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251396 GeneID:100043415
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001480111.1

name	Elovl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91598889 GeneID:170439 MGI:2156528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELOVL family member 6, elongation of long chain fatty acids (yeast) transcript_id : NM_130450.2

name	LOC100043758 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251482 GeneID:100043758
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043758 transcript_id : XM_001481055.1

name	Egf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375391 GeneID:13645 MGI:95290
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epidermal growth factor transcript_id : NM_010113.2

name	Gm421 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251399 GeneID:242235 MGI:2685267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : gene model 421, (NCBI) transcript_id : XM_143529.6

name	Rrh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842394 GeneID:20132 MGI:1097709
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinal pigment epithelium derived rhodopsin homolog transcript_id : NM_009102.3

name	Nola1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366408 GeneID:68147 MGI:1930948
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs) transcript_id : NM_026578.2

name	Cfi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347405 GeneID:12630 MGI:105937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component factor i transcript_id : NM_007686.2

name	Pla2g12a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475672 GeneID:66350 MGI:1913600
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase A2, group XIIA transcript_id : NM_023196.2

name	Pla2g12a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34556196 GeneID:66350 MGI:1913600
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase A2, group XIIA transcript_id : NM_183423.1

name	Casp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981864 GeneID:12368 MGI:1312921
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 6 transcript_id : NM_009811.2

name	Ccdc109b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982669 GeneID:66815 MGI:1914065
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 109B transcript_id : NM_025779.2

name	BC002199 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109659853 GeneID:211556 MGI:2384822
definition	codon_start : 1 product : hypothetical protein LOC211556 protein_id : NP_666076.2

name	5730508B09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076961 CCDS:CCDS17829.1 GeneID:70617 MGI:1917867
definition	codon_start : 1 product : hypothetical protein LOC70617 protein_id : NP_081758.1

name	EG668831 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369906 GeneID:668831 MGI:3643269
definition	codon_start : 1 product : similar to Ttc5 protein protein_id : XP_001003884.1

name	Pitx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30841039 CCDS:CCDS17830.1 GeneID:18741 MGI:109340
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence ISS] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0002074 - extraocular skeletal muscle development (sensu Mammalia) [Evidence IMP]; GO:0007507 - heart development [Evidence IGI] [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : paired-like homeodomain transcription factor 2 isoform b protein_id : NP_035228.2

name	Pitx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109948277 GeneID:18741 MGI:109340
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence ISS] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0002074 - extraocular skeletal muscle development (sensu Mammalia) [Evidence IMP]; GO:0007507 - heart development [Evidence IGI] [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : paired-like homeodomain transcription factor 2 isoform a protein_id : NP_001035969.1

name	Pitx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109948275 GeneID:18741 MGI:109340
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence ISS] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0002074 - extraocular skeletal muscle development (sensu Mammalia) [Evidence IMP]; GO:0007507 - heart development [Evidence IGI] [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 note : isodorm c is encoded by transcript variant 3 product : paired-like homeodomain transcription factor 2 isodorm c protein_id : NP_001035967.1

name	Enpep (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679653 CCDS:CCDS17831.1 GeneID:13809 MGI:106645
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005903 - brush border [Evidence IDA]; GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004230 - glutamyl aminopeptidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004179 - membrane alanyl aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0016477 - cell migration [Evidence ISS]; GO:0008283 - cell proliferation [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : aminopeptidase-A product : glutamyl aminopeptidase protein_id : NP_031960.1

name	LOC100043415 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251397 GeneID:100043415
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480161.1

name	Elovl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18496985 GeneID:170439 MGI:2156528
definition	GO_component : GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IDA] GO_function : GO:0016747 - transferase activity, transferring groups other than amino-acyl groups [Evidence IDA] GO_process : GO:0030497 - fatty acid elongation [Evidence IDA] codon_start : 1 note : long chain fatty acyl elongase; FEN1/Elo2, SUR4/Elo3-like product : ELOVL family member 6, elongation of long chain fatty acids protein_id : NP_569717.1

name	LOC100043758 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251483 GeneID:100043758
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481105.1

name	Egf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753732 CCDS:CCDS17833.1 GeneID:13645 MGI:95290
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0008083 - growth factor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0000186 - activation of MAPKK activity [Evidence IDA]; GO:0048754 - branching morphogenesis of a tube [Evidence IDA]; GO:0007173 - epidermal growth factor receptor signaling pathway [Evidence IDA]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence ISS] [Evidence IGI] [Evidence IDA]; GO:0050730 - regulation of peptidyl-tyrosine phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation product : epidermal growth factor protein_id : NP_034243.1

name	Gm421 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251400 GeneID:242235 MGI:2685267
definition	codon_start : 1 product : similar to FLJ44691 protein protein_id : XP_143529.6

name	Rrh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677821 GeneID:20132 MGI:1097709
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : peropsin product : retinal pigment epithelium derived rhodopsin homolog protein_id : NP_033128.1

name	Nola1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384710 GeneID:68147 MGI:1930948
definition	GO_component : GO:0001651 - dense fibrillar component [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0019843 - rRNA binding [Evidence IEA]; GO:0030515 - snoRNA binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 note : H/ACA small nucleolar RNPs product : nucleolar protein family A, member 1 protein_id : NP_080854.1

name	Cfi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347406 CCDS:CCDS17835.1 GeneID:12630 MGI:105937
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003818 - complement factor I activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : complement component factor i protein_id : NP_031712.2

name	Pla2g12a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963565 CCDS:CCDS17836.1 GeneID:66350 MGI:1913600
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005622 - intracellular [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004623 - phospholipase A2 activity [Evidence IDA] GO_process : GO:0016042 - lipid catabolism [Evidence IC]; GO:0006644 - phospholipid metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; group XIIA secreted phospholipase A2 product : group XII-1 phospholipase A2 isoform 1 protein_id : NP_075685.1

name	Pla2g12a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34556197 CCDS:CCDS17837.1 GeneID:66350 MGI:1913600
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005622 - intracellular [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004623 - phospholipase A2 activity [Evidence IDA] GO_process : GO:0016042 - lipid catabolism [Evidence IC]; GO:0006644 - phospholipid metabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; group XIIA secreted phospholipase A2 product : group XII-1 phospholipase A2 isoform 2 protein_id : NP_904359.1

name	Casp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981865 CCDS:CCDS17838.1 GeneID:12368 MGI:1312921
definition	GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : caspase 6 protein_id : NP_033941.2

name	Ccdc109b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982670 CCDS:CCDS17839.1 GeneID:66815 MGI:1914065
definition	codon_start : 1 product : coiled-coil domain containing 109B protein_id : NP_080055.2

name	LOC100043382 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043382
definition	number : 3 pseudo : _no_value

name	LOC100043382 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043382
definition	number : 2 pseudo : _no_value

name	LOC100043382 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043382
definition	number : 1 pseudo : _no_value

name	EG668828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668828
definition	number : 2 pseudo : _no_value

name	EG668828 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668828
definition	number : 1 pseudo : _no_value

name	LOC100043393 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043393
definition	number : 1 pseudo : _no_value

name	LOC100043393 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043393
definition	number : 2 pseudo : _no_value

name	LOC435755 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251398 GeneID:435755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 18 Proteins product : POU domain, class 5, transcription factor 1-like transcript_id : XR_034544.1

name	(CDS detail)
type	unsure
link
xref
definition	note : single clone coverage

clone name	MSMg01-384B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462I11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-047D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-528E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275N09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-099A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346M05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-269E13.b	B6Ng01-269E13.g
ACC	GA071923	GA071924
length	1,143	762
definition	B6Ng01-269E13.b	B6Ng01-269E13.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(128,528,579 - 128,529,731)	(128,617,918 - 128,618,678)
sequence	gaattctactattttattaaagtgttacctacttcagatggtaaataaaa ccaattgcattcttttctttttctttctttctttttatttatttttttta ttgtactggcttgtctgtgcactcctatttaaaaaagcgaatacggagtg agagggaataatgatgctgtgaatgaaacccagaaaacaccatttcagag tggataatttggactagaatgagaaatgcttccttctctagctgctcata caccaacaagcttcctaaaattccatttttattcttcaattgtatatgca tgtgttctgagattgggtacaggtgccgtgaagtccagaaagaagtcttc agatctcctggaaatagagtttcaggcagttgtgagccacttgagaaagg tgctggggactgatctcagtcttctgcatgagatgtaagagctcttagct gctgagccatctctccagcccctacatagcagctgttaagcaggggtggt tttcaaacagagattctggaagggaactagtactgtagacttccttaaga ctattgataattaacaaaaaagagtacaatgctaaatggtcaagaaagtg aagcagcttttcttctgggacaccatagcttatacatcaaagcttatgga aattataacatatcaacacgtttttcaattttgcacttcaactgaaatgc agtcctcagaaaaactgaagtaaaaacaaaattaataaaaaaaaaagctc tgtcttttttggggggaggggctgtggagaaatagaaatgtggtcattca gttggatgaagcaaagaaaccactatgagatgatgaagtagccactgtgt accaccagtcaccatgatatctattctaaaactgctgagtttatacagtg ccattgttgcaaacactatctccatgtttaaaggatagagatcatagtac caatgctgtaagaccatggaagtcagaattatgatggtattaagcatcca gaagttgaactctgtccagagctccaccatggtgtacacagctcagtgca atcagttgtctagcaatttcatcttgggatctgctctataagaacttaaa agctgtgaaacaaaaaatgctgtcatgaaaacaaagttgcctt	gaattcagtgctctcttctggctctgtgagtatatttgagataaaatcac acagacatatataaaaaaaatcacacagacatacacacaaacgaaaacaa aaaataaagtcttaaacaagaagacaaatgtaataccattattagttgta ttgatgaccacactgtctcttgaattttagaaatctagcgagtggaaacc ctctgaacttttatgaaaatcacactcaggtaacagtgacggagagaaat aaatcagtgtaagagctcttaagattctgatttttttattcttagggaac tattatatatgtaatctttttctttctggagaattactcaatttctgcat catcataaatctttgtttgacctcaaagtttttctttgctataaaaattg tatatgatccctgcatatggcaatcactagatggtccatcctttcgtcac agctccaaattccggagcctagcaaacacagaagtggatgatcacagtca gctattggatgggtcacacggcccccaatggaggagctagagaaattacc caaggagctaaagggaactgcaaccctataggtggaacaacaatatgaac taaccagtacctgggagctcttgtctttagctacatatgtatcaaaagat ggcctagtcggccatcactgcaaagagaggcccattggacttgcaaactt tatatgccccagtacaggggaacgccagggccaaaaaggggagtgggtgg gtagggggattg
quality values	Open. 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Hide. 62 59 59 59 62 46 44 62 62 62 56 56 56 34 42 34 54 56 56 62 59 62 62 62 62 62 62 59 54 54 54 62 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 54 51 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 52 58 58 58 58 54 54 58 58 54 54 58 58 58 58 58 44 58 58 58 58 58 58 58 58 58 58 54 58 58 58 52 58 58 58 54 52 52 54 47 41 58 54 58 52 54 58 58 58 49 58 49 51 58 58 58 54 58 58 58 42 58 58 54 58 58 58 51 51 54 42 50 58 52 51 58 58 58 58 58 58 27 54 58 48 58 49 58 52 51 51 58 47 50 40 51 51 39 51 39 54 52 53 58 52 50 50 41 53 58 58 50 50 54 30 58 58 27 58 50 52 37 39 51 43 51 23 46 40 51 53 52 49 54 52 53 40 51 51 45 53 37 49 49 49 25 54 49 45 40 50 54 50 38 29 54 51 50 49 51 54 54 52 54 54 37 52 47 41 47 46 31 54 54 42 40 45 45 45 45 42 51 54 54 34 33 25 23 23 38 40 28 27 49 49 32 38 28 46 46 49 42 51 49 46 15 51 29 53 47 49 40 33 52 53 47 34 31 10 46 46 46 32 33 21 30 12

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_128528579_128529731
seq2: B6Ng01-269E13.b_48_1190

seq1  GAATTCTACTATTTTATTAAAGTGTTACCTACTTCAGATGGTAAATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTATTTTATTAAAGTGTTACCTACTTCAGATGGTAAATAAAA  50

seq1  CCAATTGCATTCTTTTCTTTTTCTTTCTTTCTTTTTATTTATTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGCATTCTTTTCTTTTTCTTTCTTTCTTTTTATTTATTTTTTTTA  100

seq1  TTGTACTGGCTTGTCTGTGCACTCCTATTTAAAAAAGCGAATACGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGGCTTGTCTGTGCACTCCTATTTAAAAAAGCGAATACGGAGTG  150

seq1  AGAGGGAATAATGATGCTGTGAATGAAACCCAGAAAACACCATTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAATAATGATGCTGTGAATGAAACCCAGAAAACACCATTTCAGAG  200

seq1  TGGATAATTTGGACTAGAATGAGAAATGCTTCCTTCTCTAGCTGCTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATTTGGACTAGAATGAGAAATGCTTCCTTCTCTAGCTGCTCATA  250

seq1  CACCAACAAGCTTCCTAAAATTCCATTTTTATTCTTCAATTGTATATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAAGCTTCCTAAAATTCCATTTTTATTCTTCAATTGTATATGCA  300

seq1  TGTGTTCTGAGATTGGGTACAGGTGCCGTGAAGTCCAGAAAGAAGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGAGATTGGGTACAGGTGCCGTGAAGTCCAGAAAGAAGTCTTC  350

seq1  AGATCTCCTGGAAATAGAGTTTCAGGCAGTTGTGAGCCACTTGAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCTGGAAATAGAGTTTCAGGCAGTTGTGAGCCACTTGAGAAAGG  400

seq1  TGCTGGGGACTGATCTCAGTCTTCTGCATGAGATGTAAGAGCTCTTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGACTGATCTCAGTCTTCTGCATGAGATGTAAGAGCTCTTAGCT  450

seq1  GCTGAGCCATCTCTCCAGCCCCTACATAGCAGCTGTTAAGCAGGGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCTCCAGCCCCTACATAGCAGCTGTTAAGCAGGGGTGGT  500

seq1  TTTCAAACAGAGATTCTGGAAGGGAACTAGTACTGTAGACTTCCTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAGAGATTCTGGAAGGGAACTAGTACTGTAGACTTCCTTAAGA  550

seq1  CTATTGATAATTAACAAAAAAGAGTACAATGCTAAATGGTCAAGAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATAATTAACAAAAAAGAGTACAATGCTAAATGGTCAAGAAAGTG  600

seq1  AAGCAGCTTTTCTTCTGGGACACCATAGCTTATACATCAAAGCTTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTTTCTTCTGGGACACCATAGCTTATACATCAAAGCTTATGGA  650

seq1  AATTATAACATATCAACACGTTTTTCAATTTTGCACTTCAACTGAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACATATCAACACGTTTTTCAATTTTGCACTTCAACTGAAATGC  700

seq1  AGTCCTCAGAAAAACTGAAGTAAAAACAAAATTAATAAAAAAAAAAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAGAAAAACTGAAGTAAAAACAAAATTAATAAAAAAAAAAGCTC  750

seq1  TGTCTTTTTTGGGGGGAGGGGCTGTGGAGAAATAGAAATGTGGTCATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTGGGGGGAGGGGCTGTGGAGAAATAGAAATGTGGTCATTCA  800

seq1  GTTGGATGAAGCAAAGAAACCACTATGAGATGATGAAGTAGCCACTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGAAGCAAAGAAACCACTATGAGATGATGAAGTAGCCACTGTGT  850

seq1  ACCACCAGTCACCATGATATCTATTCTAAAACTGCTGAGTTTATACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGTCACCATGATATCTATTCTAAAACTGCTGAGTTTATACAGTG  900

seq1  CCATTGTTGCAAACACTATCTCCATGTTTTAAGGATAGAGATCATAGTAC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATTGTTGCAAACACTATCTCCATGTTTAAAGGATAGAGATCATAGTAC  950

seq1  CAATGCTGTAAGACCATGGAAGGTCAGAATTATGATGGTATTAAGCATCC  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAATGCTGTAAGACCATGGAA-GTCAGAATTATGATGGTATTAAGCATCC  999

seq1  AGAAGTTGAACTCTGTCCAGAGCTCCACCATGGTGTAACACAGCTCAGTG  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AGAAGTTGAACTCTGTCCAGAGCTCCACCATGGTGT-ACACAGCTCAGT-  1047

seq1  GCAATCAGTGGTTCTTAGCAATTTTTCATCTTGGGATCTGCTCTTATAGA  1100
      ||||||||| ||   ||||||  |||||||||||||||||||| ||||  
seq2  GCAATCAGTTGT--CTAGCAA--TTTCATCTTGGGATCTGCTC-TATAAG  1092

seq1  AACTTAAAAAGCTGTGAAAACAAATATGCTGTCATGAAAACAAAGGTTGC  1150
      ||||| |||||||||||||  ||| ||||||||||||||||||| |||||
seq2  AACTT-AAAAGCTGTGAAACAAAAAATGCTGTCATGAAAACAAA-GTTGC  1140

seq1  CTT  1153
      |||
seq2  CTT  1143

seq1: chr3_128617918_128618678
seq2: B6Ng01-269E13.g_65_826 (reverse)

seq1  CAAT-CCCCTACCCACCCACTCCCCTTTTTGGCCCTGGCGTTCCCCTGTA  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCCTACCCACCCACTCCCCTTTTTGGCCCTGGCGTTCCCCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATG  100

seq1  GCCGACTAGGCCATCTTTTGATACATATGTAGCTAAAGACAAGAGCTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTAGGCCATCTTTTGATACATATGTAGCTAAAGACAAGAGCTCCC  150

seq1  AGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCC  200

seq1  TTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCGTGTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCGTGTGAC  250

seq1  CCATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCTCCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCTCCG  300

seq1  GAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGC  350

seq1  AGGGATCATATACAATTTTTATAGCAAAGAAAAACTTTGAGGTCAAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATATACAATTTTTATAGCAAAGAAAAACTTTGAGGTCAAACAA  400

seq1  AGATTTATGATGATGCAGAAATTGAGTAATTCTCCAGAAAGAAAAAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATGATGATGCAGAAATTGAGTAATTCTCCAGAAAGAAAAAGATT  450

seq1  ACATATATAATAGTTCCCTAAGAATAAAAAAATCAGAATCTTAAGAGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAATAGTTCCCTAAGAATAAAAAAATCAGAATCTTAAGAGCTC  500

seq1  TTACACTGATTTATTTCTCTCCGTCACTGTTACCTGAGTGTGATTTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGATTTATTTCTCTCCGTCACTGTTACCTGAGTGTGATTTTCAT  550

seq1  AAAAGTTCAGAGGGTTTCCACTCGCTAGATTTCTAAAATTCAAGAGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAGAGGGTTTCCACTCGCTAGATTTCTAAAATTCAAGAGACAG  600

seq1  TGTGGTCATCAATACAACTAATAATGGTATTACATTTGTCTTCTTGTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCATCAATACAACTAATAATGGTATTACATTTGTCTTCTTGTTTA  650

seq1  AGACTTTATTTTTTGTTTTCGTTTGTGTGTATGTCTGTGTGATTTTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTATTTTTTGTTTTCGTTTGTGTGTATGTCTGTGTGATTTTTTTT  700

seq1  ATATATGTCTGTGTGATTTTATCTCAAATATACTCACAGAGCCAGAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCTGTGTGATTTTATCTCAAATATACTCACAGAGCCAGAAGAG  750

seq1  AGCACTGAATTC  761
      ||||||||||||
seq2  AGCACTGAATTC  762

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information