BAC Information

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BAC

Clone NameB6Ng01-269P09
Chromosome3 (Build37)
Map Location 34,476,381 - 34,607,338
singlet/doubletdoublet
Overlap geneEG622074, Sox2, LOC100041108
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
Downstream geneLOC665655, Ube2l3-ps1, LOC625963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269P09.bB6Ng01-269P09.g
ACCGA072425GA072426
length9791,047
definitionB6Ng01-269P09.b B6Ng01-269P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,606,424 - 34,607,338)(34,476,381 - 34,477,427)
sequence
gaattctctacaccacacaggtcctggcatcaggaagcatgcacatagtg
attgcagatttcaccaagggaaagatctcacggctgacaatcattcctat
atataattttttttcgttattattgttgtgtgttatgtgtgagatctatg
tggtcacaggtgctatatatggggcacacgtggaggtcagttctctgctt
ccacttgtaggtgggttccaggaattgaactcaggtcaccttgtttagta
agtgcctttacccattcagcattctctccggctgtttgttttcgtcttgg
gcagggtctcacgtagccttggatttaccacatagctaagaatgattctt
gatagtcctaattgcctaagtgctgaggtgacaggatgtatcaccacacc
cagctttcctataaagattgtatgtgtgcatgtatgtctgtgagaacaca
tgtgcacacacacacacacacacacacacacacacacgtgtacccatgtg
aatgagatgggggtcctcctctgctcctctctgccttagtcctttcaggc
caggtctctcactgaaccaggaatgagattaacagcagcaagcctcagca
atcatctggtctccaaccttttcctctcctctagcactagggttacaagc
aagcactagagactgctcccaactttttacatgggtactgggactcaaac
tcaggtcctcatgtttgcatagcaagtactcttttttttttttttttttt
ggttttttgagacagggtttctctgtgtagccctggctgtcctggaactc
actctgtagaccaggctggcctcaaactcagaaatccacctggcctctgc
ctcccaagtgcttagaataatgtgtgcttattccatccccaacactaggg
gaggttagaagcagaaaggatcagggggttccgagggccattcttgggct
ataaccagaagccagtttccaaacaaaaa
gaattcctgcccaggtatagggacatgtaaaaccttttgagactgtggct
gttcattcaaacgttttaacatttatgaaacacagtcatattaagaaaaa
aaatacgcgttgaaataatgtagtaatcaagacttagccacttacaggag
gccagtgggagctgagtttatgttattgattttagaactacagcgaaaga
gagagagagagagacagagagagagagagaggtgaaatattgccttcact
gttttcagataataatgactgttgttgcaaattataaaatttaattagct
atataaattccagaagaacaaacggtatgccattgtcttgatatctttcc
agaaattagtcttttaaaaaataaatttgccatattaatcatctaaaaat
atttttgatcactgaattaatggttttaggcctgttttcaggtgctcatt
gctataggtgattgcttcttaattactacatggactctctattcactcat
attaattcatgtttgctggcacagtcccagaggcagcctgccctggatct
tctaattacttctataattgaatttgcccactttttctaacctatttttt
aaactgactgtgtttgtcccaagcttattgtgtcttttttgtgtcagttc
cctgcaagcagagtgtacatcgatcctttcctcgtttctcattaattttc
aagagcttggccgcatgtcggttttttttttttttcagtccgtcagacct
attgcgaaacggaaaagaaaaaaaaaaaaaaagaaagaaagaaagaaagg
gaaagaggaaaaagggaaaaaaggacttttattattaaaggttaggtaaa
atagactgaagttaattaattcattagtaaccctgagccaattactgaag
ccttctcttatttatatacttgttaacagacagaaacgagaaaggccaaa
ttacaggcacatgcccttcacaacttcagccctctcagcacttacactct
cctctcctgacacctctctaaagccacatatgtatcagatgtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34606424_34607338
seq2: B6Ng01-269P09.b_50_972 (reverse)

seq1  TGATCC-TTCTGCTTCT-ACCT-CCCTAGTGTT-GGGAT-GAATAAGCAC  45
      |||||| |||||||||| |||| |||||||||| ||||| ||||||||||
seq2  TGATCCTTTCTGCTTCTAACCTCCCCTAGTGTTGGGGATGGAATAAGCAC  50

seq1  ACA-TATTCT-AGCACTTGGGAGGCAGAGG-CAGGTGGATTTCTGAGTTT  92
      ||| |||||| ||||||||||||||||||| |||||||||||||||||||
seq2  ACATTATTCTAAGCACTTGGGAGGCAGAGGCCAGGTGGATTTCTGAGTTT  100

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACA  150

seq1  GAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAGAGTACTT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAGAGTACTT  200

seq1  GCTATGCAAACATGAGGACCTGAGTTTGAGTCCCAGTACCCATGTAAAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAAACATGAGGACCTGAGTTTGAGTCCCAGTACCCATGTAAAAA  250

seq1  GTTGGGAGCAGTCTCTAGTGCTTGCTTGTAACCCTAGTGCTAGAGGAGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAGCAGTCTCTAGTGCTTGCTTGTAACCCTAGTGCTAGAGGAGAG  300

seq1  GAAAAGGTTGGAGACCAGATGATTGCTGAGGCTTGCTGCTGTTAATCTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTTGGAGACCAGATGATTGCTGAGGCTTGCTGCTGTTAATCTCA  350

seq1  TTCCTGGTTCAGTGAGAGACCTGGCCTGAAAGGACTAAGGCAGAGAGGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTCAGTGAGAGACCTGGCCTGAAAGGACTAAGGCAGAGAGGAG  400

seq1  CAGAGGAGGACCCCCATCTCATTCACATGGGTACACGTGTGTGTGTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGACCCCCATCTCATTCACATGGGTACACGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGCACATGTGTTCTCACAGACATACATGCACAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGCACATGTGTTCTCACAGACATACATGCACAC  500

seq1  ATACAATCTTTATAGGAAAGCTGGGTGTGGTGATACATCCTGTCACCTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCTTTATAGGAAAGCTGGGTGTGGTGATACATCCTGTCACCTCA  550

seq1  GCACTTAGGCAATTAGGACTATCAAGAATCATTCTTAGCTATGTGGTAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGGCAATTAGGACTATCAAGAATCATTCTTAGCTATGTGGTAAA  600

seq1  TCCAAGGCTACGTGAGACCCTGCCCAAGACGAAAACAAACAGCCGGAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTACGTGAGACCCTGCCCAAGACGAAAACAAACAGCCGGAGAG  650

seq1  AATGCTGAATGGGTAAAGGCACTTACTAAACAAGGTGACCTGAGTTCAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAATGGGTAAAGGCACTTACTAAACAAGGTGACCTGAGTTCAAT  700

seq1  TCCTGGAACCCACCTACAAGTGGAAGCAGAGAACTGACCTCCACGTGTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACCCACCTACAAGTGGAAGCAGAGAACTGACCTCCACGTGTGC  750

seq1  CCCATATATAGCACCTGTGACCACATAGATCTCACACATAACACACAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATATAGCACCTGTGACCACATAGATCTCACACATAACACACAACA  800

seq1  ATAATAACGAAAAAAAATTATATATAGGAATGATTGTCAGCCGTGAGATC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACGAAAAAAAATTATATATAGGAATGATTGTCAGCCGTGAGATC  850

seq1  TTTCCCTTGGTGAAATCTGCAATCACTATGTGCATGCTTCCTGATGCCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTGGTGAAATCTGCAATCACTATGTGCATGCTTCCTGATGCCAG  900

seq1  GACCTGTGTGGTGTAGAGAATTC  915
      |||||||||||||||||||||||
seq2  GACCTGTGTGGTGTAGAGAATTC  923

seq1: chr3_34476381_34477427
seq2: B6Ng01-269P09.g_65_1111

seq1  GAATTCCTGCCCAGGTATAGGGACATGTAAAACCTTTTGAGACTGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCAGGTATAGGGACATGTAAAACCTTTTGAGACTGTGGCT  50

seq1  GTTCATTCAAACGTTTTAACATTTATGAAACACAGTCATATTAAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCAAACGTTTTAACATTTATGAAACACAGTCATATTAAGAAAAA  100

seq1  AAATACGCGTTGAAATAATGTAGTAATCAAGACTTAGCCACTTACAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGCGTTGAAATAATGTAGTAATCAAGACTTAGCCACTTACAGGAG  150

seq1  GCCAGTGGGAGCTGAGTTTATGTTATTGATTTTAGAACTACAGCGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGGAGCTGAGTTTATGTTATTGATTTTAGAACTACAGCGAAAGA  200

seq1  GAGAGAGAGAGAGACAGAGAGAGAGAGAGAGGTGAAATATTGCCTTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGACAGAGAGAGAGAGAGAGGTGAAATATTGCCTTCACT  250

seq1  GTTTTCAGATAATAATGACTGTTGTTGCAAATTATAAAATTTAATTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGATAATAATGACTGTTGTTGCAAATTATAAAATTTAATTAGCT  300

seq1  ATATAAATTCCAGAAGAACAAACGGTATGCCATTGTCTTGATATCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTCCAGAAGAACAAACGGTATGCCATTGTCTTGATATCTTTCC  350

seq1  AGAAATTAGTCTTTTAAAAAATAAATTTGCCATATTAATCATCTAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAGTCTTTTAAAAAATAAATTTGCCATATTAATCATCTAAAAAT  400

seq1  ATTTTTGATCACTGAATTAATGGTTTTAGGCCTGTTTTCAGGTGCTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATCACTGAATTAATGGTTTTAGGCCTGTTTTCAGGTGCTCATT  450

seq1  GCTATAGGTGATTGCTTCTTAATTACTACATGGACTCTCTATTCACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGTGATTGCTTCTTAATTACTACATGGACTCTCTATTCACTCAT  500

seq1  ATTAATTCATGTTTGCTGGCACAGTCCCAGAGGCAGCCTGCCCTGGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCATGTTTGCTGGCACAGTCCCAGAGGCAGCCTGCCCTGGATCT  550

seq1  TCTAATTACTTCTATAATTGAATTTGCCCACTTTTTCTAACCTATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTACTTCTATAATTGAATTTGCCCACTTTTTCTAACCTATTTTTT  600

seq1  AAACTGACTGTGTTTGTCCCAAGCTTATTGTGTCTTTTTTGTGTCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTGTGTTTGTCCCAAGCTTATTGTGTCTTTTTTGTGTCAGTTC  650

seq1  CCTGCAAGCAGAGTGTACATCGATCCTTTCCTCGTTTCTCATTAATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCAGAGTGTACATCGATCCTTTCCTCGTTTCTCATTAATTTTC  700

seq1  AAGAGCTTGGCCGCATGTCGGTTTTTTTTTTTTTTCAGTCCGTCAGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGGCCGCATGTCGGTTTTTTTTTTTTTTCAGTCCGTCAGACCT  750

seq1  ATTGCGAAACGGAAAAG-AAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGG  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTGCGAAACGGAAAAGAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGG  800

seq1  GAAAGAGGAAAAAGGGAAAAAAGGACTTTTATTATTAAAGGTTAGGTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAAAAAGGGAAAAAAGGACTTTTATTATTAAAGGTTAGGTAAA  850

seq1  ATAGACTGAAGTTAATTAATTCATTAGTAACCCTGAGCCAATTACTGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGAAGTTAATTAATTCATTAGTAACCCTGAGCCAATTACTGAAG  900

seq1  CCTTCTCTTATTTATATACTTGTTAACAAGACAGAAACGAGAAAGGCC-A  948
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  CCTTCTCTTATTTATATACTTGTTAAC-AGACAGAAACGAGAAAGGCCAA  949

seq1  ATTACAGGCACATGCCCTTCACAACTTCAGCCCTCTCAGCACTTACACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGCACATGCCCTTCACAACTTCAGCCCTCTCAGCACTTACACTC  999

seq1  TCCTCTCCTGACACCTCTCCTAAAGCCACATATGTATCAGATGTGTGAG  1047
      |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCTCTCCTGACACCTCT-CTAAAGCCACATATGTATCAGATGTGTGAG  1047