BAC Information

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BAC

Clone NameB6Ng01-271H16
Chromosome3 (Build37)
Map Location 126,303,156 - 126,451,060
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H16.bB6Ng01-271H16.g
ACCGA073550GA073551
length993934
definitionB6Ng01-271H16.b B6Ng01-271H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,450,069 - 126,451,060)(126,303,156 - 126,304,080)
sequence
gaattctggaagtgaccagagcacagtctcccttcttcttacatgaaaat
gcagggctttgctgggctttcctaaagaccgccttgttctcccttcctta
tggtgtgcttcttttgcataacacttttctgtagcttccatttcagcatt
attacatggatatgtattttttttttctgttcctaagtccataaaatctt
agtccttgtcttgattatcattcaggctacccaggtccccatttgctcca
ataatccgtgtccagcgtttggagtcacatgatgtccagagtggcccctt
ctggggtaggaatgagatttattttccatgagttaacatggggcaggaag
ggcatttgcttatgagtcattaagtaaataaaagcatttaaatctaagac
acatacttctgtctcctactgatttttctttaactcagccatctttccac
cttcatttattgaggcacaatatgcatagactagtgacgattcctgtgaa
ctttgaataatatgttgttgtgctgtcattacaggtgatcaagacagaaa
attcgtaactaaacattttttcaaagtcacatattttatatatccctcct
tgcacttttaagacagaagccaacactttagtacaatatatttagtatat
tattaccttaaacaaagaacaacagcaacaacaaaatctgggctggcaag
atggctcagccaggaaaggtgcttgccactaagcaccgtgaactgacttc
tatatctctaaccctgggcaacatggtagaagaaaagaattgactgccac
atatacatgtcctttgccctccacatatatgcactaggccacatttagtc
acatgtaagcatctagataaagaaataaaattgttagaaataagaacccg
aggcagggtggatttctgagttcgaggccagcctggtctacaaagtgagt
tccaggacagtcagggctatacagagaaaccctgtctcgaaaa
gaattccacgatacttcccgtcatctgatttgctcttgttctgagaaaga
atgcaaactgaccaggaacaccatggtgtcctggtgtgaaaactaatgag
ggacatgccatgctaattacctctccctttcgagcctccactctattgga
agtttttatttttttagaatcacgagggatgcagaagtataagtgccagt
ttaagggaaagaagaagactgaaaacattgagtcgggttttttttctttc
ttctagtgattatgttatttcttccagtgtgatatgtcctttggcaatgg
tgggctatcattttttttttgggggggaggtattaccacgcctcttccaa
gtcctttaatagctttagatttcttctcagaacaaatggattgggaactt
cactttttcttagtgagagtcatcacgttttatccattttgtctcatatg
ccccatatcagcctggtggtattgctgtcaatgctcacccttttctcctc
cgtgggagatgagtgccccagcctgagcggcctccagcactttcttctct
gaacgcttcctccagtgtcactcagctgctcatgcccagcctctacaaat
caccttcctgtctcagaagacactcttgttatcttcctgtgcgatttttt
gattatttatgttttatttattatttttaggtgtgtgtgtgtgtctgggc
cctcagggctgggtagtggggaactgaaactcctccagcctgcaagaaca
aaggatatctatccctcatttgttgagctatctctccagccctctttctt
tgctctatattccccagaaaaaatgccatctgtcctggagctgggagtgg
ataatgctctcgctttcagtcctgattcctgcacctgctagctagggtga
tctttaggcaatcctacttcattttatctgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126450069_126451060
seq2: B6Ng01-271H16.b_42_1034 (reverse)

seq1  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACT  50

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCA-CCTGCCTCGGGTTC  99
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCCTGCCTCGGGTTC  100

seq1  TTATTTCTAACAATTTTATTTCTTTATCTAGATGCTTACATGTGACTAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAACAATTTTATTTCTTTATCTAGATGCTTACATGTGACTAAA  150

seq1  TGTGGCCTAGTGCATATATGTGGAGGGCAAAGGACATGTATATGTGGCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTAGTGCATATATGTGGAGGGCAAAGGACATGTATATGTGGCAG  200

seq1  TCAATTCTTTTCTTCTACCATGTTGCCCAGGGTTAGAGATATAGAAGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTTTTCTTCTACCATGTTGCCCAGGGTTAGAGATATAGAAGTCA  250

seq1  GTTCACGGTGCTTAGTGGCAAGCACCTTTCCTGGCTGAGCCATCTTGCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACGGTGCTTAGTGGCAAGCACCTTTCCTGGCTGAGCCATCTTGCCA  300

seq1  GCCCAGATTTTGTTGTTGCTGTTGTTCTTTGTTTAAGGTAATAATATACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATTTTGTTGTTGCTGTTGTTCTTTGTTTAAGGTAATAATATACT  350

seq1  AAATATATTGTACTAAAGTGTTGGCTTCTGTCTTAAAAGTGCAAGGAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGTACTAAAGTGTTGGCTTCTGTCTTAAAAGTGCAAGGAGGG  400

seq1  ATATATAAAATATGTGACTTTGAAAAAATGTTTAGTTACGAATTTTCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAATATGTGACTTTGAAAAAATGTTTAGTTACGAATTTTCTGT  450

seq1  CTTGATCACCTGTAATGACAGCACAACAACATATTATTCAAAGTTCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCACCTGTAATGACAGCACAACAACATATTATTCAAAGTTCACAG  500

seq1  GAATCGTCACTAGTCTATGCATATTGTGCCTCAATAAATGAAGGTGGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGTCACTAGTCTATGCATATTGTGCCTCAATAAATGAAGGTGGAAA  550

seq1  GATGGCTGAGTTAAAGAAAAATCAGTAGGAGACAGAAGTATGTGTCTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGAGTTAAAGAAAAATCAGTAGGAGACAGAAGTATGTGTCTTAG  600

seq1  ATTTAAATGCTTTTATTTACTTAATGACTCATAAGCAAATGCCCTTCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGCTTTTATTTACTTAATGACTCATAAGCAAATGCCCTTCCTG  650

seq1  CCCCATGTTAACTCATGGAAAATAAATCTCATTCCTACCCCAGAAGGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTTAACTCATGGAAAATAAATCTCATTCCTACCCCAGAAGGGGC  700

seq1  CACTCTGGACATCATGTGACTCCAAACGCTGGACACGGATTATTGGAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGACATCATGTGACTCCAAACGCTGGACACGGATTATTGGAGCA  750

seq1  AATGGGGACCTGGGTAGCCTGAATGATAATCAAGACAAGGACTAAGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGACCTGGGTAGCCTGAATGATAATCAAGACAAGGACTAAGATTT  800

seq1  TATGGACTTAGGAACAGAAAAAAAAAATACATATCCATGTAATAATGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTTAGGAACAGAAAAAAAAAATACATATCCATGTAATAATGCTG  850

seq1  AAATGGAAGCTACAGAAAAGTGTTATGCAAAAGAAGCACACCATAAGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGCTACAGAAAAGTGTTATGCAAAAGAAGCACACCATAAGGAA  900

seq1  GGGAGAACAAGGCGGTCTTTAGGAAAGCCCAGCAAAGCCCTGCATTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACAAGGCGGTCTTTAGGAAAGCCCAGCAAAGCCCTGCATTTTCA  950

seq1  TGTAAGAAGAAGGGAGACTGTGCTCTGGTCACTTCCAGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGAAGGGAGACTGTGCTCTGGTCACTTCCAGAATTC  993

seq1: chr3_126303156_126304080
seq2: B6Ng01-271H16.g_66_999

seq1  GAATTCCACGATACTTCCCGTCATCTGATTTGCTCTTGTTCTGAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGATACTTCCCGTCATCTGATTTGCTCTTGTTCTGAGAAAGA  50

seq1  ATGCAAACTGACCAGGAACACCATGGTGTCCTGGTGTGAAAACTAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTGACCAGGAACACCATGGTGTCCTGGTGTGAAAACTAATGAG  100

seq1  GGACATGCCATGCTAATTACCTCTCCCTTTCGAGCCTCCACTCTATTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCCATGCTAATTACCTCTCCCTTTCGAGCCTCCACTCTATTGGA  150

seq1  AGTTTTTATTTTTTTAGAATCACGAGGGATGCAGAAGTATAAGTGCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTTTTTTAGAATCACGAGGGATGCAGAAGTATAAGTGCCAGT  200

seq1  TTAAGGGAAAGAAGAAGACTGAAAACATTGAGTCGGGTTTTTTTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGAAAGAAGAAGACTGAAAACATTGAGTCGGGTTTTTTTTCTTTC  250

seq1  TTCTAGTGATTATGTTATTTCTTCCAGTGTGATATGTCCTTTGGCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGATTATGTTATTTCTTCCAGTGTGATATGTCCTTTGGCAATGG  300

seq1  TGGGCTATCATTTTTTTTTTGGGGGGGAGGTATTACCACGCCTCTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATCATTTTTTTTTTGGGGGGGAGGTATTACCACGCCTCTTCCAA  350

seq1  GTCCTTTAATAGCTTTAGATTTCTTCTCAGAACAAATGGATTGGGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAATAGCTTTAGATTTCTTCTCAGAACAAATGGATTGGGAACTT  400

seq1  CACTTTTTCTTAGTGAGAGTCATCACGTTTTATCCATTTTGTCTCATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTCTTAGTGAGAGTCATCACGTTTTATCCATTTTGTCTCATATG  450

seq1  CCCCATATCAGCCTGGTGGTATTGCTGTCAATGCTCACCCTTTTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATCAGCCTGGTGGTATTGCTGTCAATGCTCACCCTTTTCTCCTC  500

seq1  CGTGGGAGATGAGTGCCCCAGCCTGAGCGGCCTCCAGCACTTTCTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAGATGAGTGCCCCAGCCTGAGCGGCCTCCAGCACTTTCTTCTCT  550

seq1  GAACGCTTCCTCCAGTGTCACTCAGCTGCTCATGCCCAGCCTCTACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTTCCTCCAGTGTCACTCAGCTGCTCATGCCCAGCCTCTACAAAT  600

seq1  CACCTTCCTGTCTCAGAAGACACTCTTGTTATCTTCCTGTGCGATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCTGTCTCAGAAGACACTCTTGTTATCTTCCTGTGCGATTTTTT  650

seq1  GATTATTTATGTTTTATTTATTATTTTTAGGTGTGTGTGTGTGTCTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTATGTTTTATTTATTATTTTTAGGTGTGTGTGTGTGTCTGGGC  700

seq1  CCTCAGGGCTGGGTAGT-GGGAACTG-AACTCCTCCAGCCTGCAAGAAC-  747
      ||||||||||||||||| |||||||| |||||||||||||||||||||| 
seq2  CCTCAGGGCTGGGTAGTGGGGAACTGAAACTCCTCCAGCCTGCAAGAACA  750

seq1  AAGGATATCTATCCCTCATTTGTTGAGCTATCTCTCCAG-CCTCTTTCTT  796
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGATATCTATCCCTCATTTGTTGAGCTATCTCTCCAGCCCTCTTTCTT  800

seq1  TGCTCTATATTCCCCAGAAAAAATGCCATCTGTCCTGGAGCT-GGAGT-G  844
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TGCTCTATATTCCCCAGAAAAAATGCCATCTGTCCTGGAGCTGGGAGTGG  850

seq1  ATAATGCTCTCGCTTTCAGTCCTGATTCCTGCACCTGCTAGCTA-GGTGA  893
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAATGCTCTCGCTTTCAGTCCTGATTCCTGCACCTGCTAGCTAGGGTGA  900

seq1  TC-TTAGGCAAT-CTAC-TCATTTTAATCTGAACC  925
      || ||||||||| |||| ||||||| ||||||| |
seq2  TCTTTAGGCAATCCTACTTCATTTT-ATCTGAAGC  934