BAC Information

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BAC

Clone NameB6Ng01-273B10
Chromosome3 (Build37)
Map Location 147,448,991 - 147,597,476
singlet/doubletdoublet
Overlap genenone
Upstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273B10.bB6Ng01-273B10.g
ACCGA074749GA074750
length1,1821,165
definitionB6Ng01-273B10.b B6Ng01-273B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,596,284 - 147,597,476)(147,448,991 - 147,450,161)
sequence
gaattcattcttaaaaaaatataaaatataaaatataaaaaatataaaaa
tattttaaaaaaagaattcattcttataaggataagcatgcatgtccaca
ctttatgtacctgccgtgtgcagcctagactagctatgactgtgactcaa
cacataatcataaagtaactttaaatattatgagacttttaaaaaaaagc
agggtgactttactgtatgtcttaccagtgtgaactttgtagaaggcaat
atcctgttgtaatgtcagaaggctcgacatggccgctgtagggaccaata
tgaatgacatggcatggaaggctaaagggaataggagaaagaaaaaaatc
ttcctgtgcagagttacatgtgtgattgttatttgctgacttactttatg
gaaaatccaatgtttgaaaactttaggaaccttataaaatattgacttga
agaaaacttgctcatgcccaagaaaaatagcaatttcatttaaagtggtt
tcaatttcttcttttttatttattattattatcactattattattattat
tattattattattattcctatttcatatgtgtttgtgtgtatgcatgtgt
gtgtggctatacgtatgtgtttgtttttctgggttgtctgtatttgcctg
caaaaatatagaatggacagctcaccccattttgattataaaaagtaaac
tacttttcatagcaaagtgggatgtggtgtagcttggtggtccctttaac
ccttgtctttttttatataaaaatcccaatatttcattcaaattatctcc
actcaaccattgtgacaaggtgaatgaataacttagaagccaaaggtaca
gggactatagatatgaaacgtttgggcctgtttatggcacatgtgtgtat
aaatcaatccaaactcctgtaatttaaatttatatatcaatatgctatca
gttcttaaggtctgaaagatgcattctgagctcattagcctcatctacaa
attgtggcgttgtgttagattcccacaaaacctcttcgtagtctagatga
tgtgatgatgatgatgattgcattggtctagaaatgttagttgaaaagct
tatggcacacatctatttagaactctaatctccctttttaatgcaactat
taagctaacatttagcccttcggccacatggt

gaattccaaaccactgcattaatacctttagatagcgatatgtagactgt
tggaaacattcaacaaatggaatgtttcttatggtgtcaccagagaaagg
tggtagttggacaggtaagacgagtaatggaggtttcctgagcattcacc
aatagaggtgcacagcaacatggctaacattttacgaacagtagcccttt
tcatcgtcccagaaacttaatgaactataaaccacatcatccttagctta
agggcgaggaagttgaggtttagatggtgatatgttggggctgagaagac
acagctacaaaaaacagttacggttttacactctaatcctgagtatgtcc
gacctgctccttcagtcttacaactatccacgcattaatttctatacatc
ctaatgtctgtttgctcatcttctcaagttggctacaaagaacagcactt
aggaatctagaacaaaaaaagctgccttttcatttggccttaactatggg
tagtaaaattttaattaccttttgtttagaaagtgctacaagacctgaac
tgtaatcagtgctggaagtgggcacaccaaggggttgttgatttccctag
tgaatttgggtatcatttatggaaatgtaattacagaggagtcctgttat
aacgatcaatttgggcaacccccatttgatcattacatccaaatgatcac
cacatacagcccataaaacagtgagcctctcaaaccagacaggctctaca
gtcaaatatccatcttgcaaaaccagagttattaccactgagtacttcag
aaccagcacaggtcagtaacgttattggctctaattagcccttctaaagg
ccctaaagtttttttttttttaagctaaatcataatggcttatatataaa
gggctttcaaattcaactaagtcaacaagtattttattatgcacccgctg
tgtactccaaatgggctcagctactgaagagaaagcaaagcaaataagaa
catttctttgttgtggctcaccatgaaacttaagaaattgtgtactcatc
aaacagctctgctaaaatagttgggtgcacaaatcccaccttcccaatgc
tgttcatctcaagtaaaaggaagaaagacctatggacctgttagaaaaaa
gagtttgttaagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147596284_147597476
seq2: B6Ng01-273B10.b_48_1229 (reverse)

seq1  ACCATGTGGCCGAA-GGCTAAATTTTAACTTATATAATTTTCTATTAAAA  49
      |||||||||||||| |||||||| ||| |||| |||   ||  |||||||
seq2  ACCATGTGGCCGAAGGGCTAAATGTTAGCTTA-ATA--GTTGCATTAAAA  47

seq1  AGAGGGCATAGAG-TCTAAAATTAGATGTTGTTGCCATTAGCTTTTTCAA  98
      || | |  ||||| ||||||  |||||||   |||||| |||||||   |
seq2  AGGGAGATTAGAGTTCTAAA--TAGATGT--GTGCCATAAGCTTTT--CA  91

seq1  ACTAAACATTTTCTAGACCAATGGCCATCATCATCATCATCAACATCATC  148
      ||| |||| ||||||||||||| || ||||||||||||||| ||||||||
seq2  ACT-AACA-TTTCTAGACCAAT-GCAATCATCATCATCATC-ACATCATC  137

seq1  TAGACCTACGAAGAGGTTTTGTGGGAATCTAACACAACGCCACAATTTTG  198
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGA-CTACGAAGAGGTTTTGTGGGAATCTAACACAACGCCACAA-TTTG  185

seq1  TAGATGAGGCTAATGAGCTCAGAATGCATCTTTCAGACCTTAAGAACTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGGCTAATGAGCTCAGAATGCATCTTTCAGACCTTAAGAACTGA  235

seq1  TAGCATATTGATATATAAATTTAAATTACAGGAGTTTGGATTGATTTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTGATATATAAATTTAAATTACAGGAGTTTGGATTGATTTATA  285

seq1  CACACATGTGCCATAAACAGG-CCAAACGTTTCATATCTATAGTCCCTGT  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACACATGTGCCATAAACAGGCCCAAACGTTTCATATCTATAGTCCCTGT  335

seq1  ACC-TTGGCTTCTAAGTTATTCATTCACCTTGTCACAATGGTTGAGTGGA  396
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGCTTCTAAGTTATTCATTCACCTTGTCACAATGGTTGAGTGGA  385

seq1  GATAATTTGAATGAAATATTGGGATTTTTATATAAAAAAAGACAAGGGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTGAATGAAATATTGGGATTTTTATATAAAAAAAGACAAGGGTT  435

seq1  AAAGGGACCACCAAGCTACACCACATCCCACTTTGCTATGAAAAGTAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACCACCAAGCTACACCACATCCCACTTTGCTATGAAAAGTAGTT  485

seq1  TACTTTTTATAATCAAAATGGGGTGAGCTGTCCATTCTATATTTTTGCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTATAATCAAAATGGGGTGAGCTGTCCATTCTATATTTTTGCAG  535

seq1  GCAAATACAGACAACCCAGAAAAACAAACACATACGTATAGCCACACACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACAGACAACCCAGAAAAACAAACACATACGTATAGCCACACACA  585

seq1  CATGCATACACACAAACACATATGAAATAGGAATAATAATAATAATAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACACACAAACACATATGAAATAGGAATAATAATAATAATAATA  635

seq1  ATAATAATAATAGTGATAATAATAATAAATAAAAAAGAAGAAATTGAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAGTGATAATAATAATAAATAAAAAAGAAGAAATTGAAAC  685

seq1  CACTTTAAATGAAATTGCTATTTTTCTTGGGCATGAGCAAGTTTTCTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAATGAAATTGCTATTTTTCTTGGGCATGAGCAAGTTTTCTTCA  735

seq1  AGTCAATATTTTATAAGGTTCCTAAAGTTTTCAAACATTGGATTTTCCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATTTTATAAGGTTCCTAAAGTTTTCAAACATTGGATTTTCCAT  785

seq1  AAAGTAAGTCAGCAAATAACAATCACACATGTAACTCTGCACAGGAAGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTCAGCAAATAACAATCACACATGTAACTCTGCACAGGAAGAT  835

seq1  TTTTTTCTTTCTCCTATTCCCTTTAGCCTTCCATGCCATGTCATTCATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTCCTATTCCCTTTAGCCTTCCATGCCATGTCATTCATAT  885

seq1  TGGTCCCTACAGCGGCCATGTCGAGCCTTCTGACATTACAACAGGATATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTACAGCGGCCATGTCGAGCCTTCTGACATTACAACAGGATATT  935

seq1  GCCTTCTACAAAGTTCACACTGGTAAGACATACAGTAAAGTCACCCTGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTACAAAGTTCACACTGGTAAGACATACAGTAAAGTCACCCTGCT  985

seq1  TTTTTTTAAAAGTCTCATAATATTTAAAGTTACTTTATGATTATGTGTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAGTCTCATAATATTTAAAGTTACTTTATGATTATGTGTTG  1035

seq1  AGTCACAGTCATAGCTAGTCTAGGCTGCACACGGCAGGTACATAAAGTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTCATAGCTAGTCTAGGCTGCACACGGCAGGTACATAAAGTGT  1085

seq1  GGACATGCATGCTTATCCTTATAAGAATGAATTCTTTTTTTAAAATATTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCATGCTTATCCTTATAAGAATGAATTCTTTTTTTAAAATATTT  1135

seq1  TTATATTTTTTATATTTTATATTTTATATTTTTTTAAGAATGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTTATATTTTATATTTTATATTTTTTTAAGAATGAATTC  1182


seq1: chr3_147448991_147450161
seq2: B6Ng01-273B10.g_66_1230

seq1  GAATTCCAAACCACTGCATTAATACCTTTAGATAGCGATATGTAGACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCACTGCATTAATACCTTTAGATAGCGATATGTAGACTGT  50

seq1  TGGAAACATTCAACAAATGGAATGTTTCTTATGGTGTCACCAGAGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTCAACAAATGGAATGTTTCTTATGGTGTCACCAGAGAAAGG  100

seq1  TGGTAGTTGGACAGGTAAGACGAGTAATGGAGGTTTCCTGAGCATTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGGACAGGTAAGACGAGTAATGGAGGTTTCCTGAGCATTCACC  150

seq1  AATAGAGGTGCACAGCAACATGGCTAACATTTTACGAACAGTAGCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGTGCACAGCAACATGGCTAACATTTTACGAACAGTAGCCCTTT  200

seq1  TCATCGTCCCAGAAACTTAATGAACTATAAACCACATCATCCTTAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCCCAGAAACTTAATGAACTATAAACCACATCATCCTTAGCTTA  250

seq1  AGGGCGAGGAAGTTGAGGTTTAGATGGTGATATGTTGGGGCTGAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGAGGAAGTTGAGGTTTAGATGGTGATATGTTGGGGCTGAGAAGAC  300

seq1  ACAGCTACAAAAAACAGTTACGGTTTTACACTCTAATCCTGAGTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAAAAAACAGTTACGGTTTTACACTCTAATCCTGAGTATGTCC  350

seq1  GACCTGCTCCTTCAGTCTTACAACTATCCACGCATTAATTTCTATACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTCCTTCAGTCTTACAACTATCCACGCATTAATTTCTATACATC  400

seq1  CTAATGTCTGTTTGCTCATCTTCTCAAGTTGGCTACAAAGAACAGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTGTTTGCTCATCTTCTCAAGTTGGCTACAAAGAACAGCACTT  450

seq1  AGGAATCTAGAACAAAAAAAGCTGCCTTTTCATTTGGCCTTAACTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTAGAACAAAAAAAGCTGCCTTTTCATTTGGCCTTAACTATGGG  500

seq1  TAGTAAAATTTTAATTACCTTTTGTTTAGAAAGTGCTACAAGACCTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATTTTAATTACCTTTTGTTTAGAAAGTGCTACAAGACCTGAAC  550

seq1  TGTAATCAGTGCTGGAAGTGGGCACACCAAGGGGTTGTTGATTTCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAGTGCTGGAAGTGGGCACACCAAGGGGTTGTTGATTTCCCTAG  600

seq1  TGAATTTGGGTATCATTTATGGAAATGTAATTACAGAGGAGTCCTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGGGTATCATTTATGGAAATGTAATTACAGAGGAGTCCTGTTAT  650

seq1  AACGATCAATTTGGGCAACCCCCATTTGATCATTACATCCAAATGATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCAATTTGGGCAACCCCCATTTGATCATTACATCCAAATGATCAC  700

seq1  CACATACAGCCCATAAAACAGTGAGCCTCTCAAACCAGACAGGCTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGCCCATAAAACAGTGAGCCTCTCAAACCAGACAGGCTCTACA  750

seq1  GTCAAATATCCATCTTGCAAAACCAGAGTTATTACCACTGAGTACTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATCCATCTTGCAAAACCAGAGTTATTACCACTGAGTACTTCAG  800

seq1  AACCAGCACAGGTCAGTAACGTTATTGGCTCTAATTAGCCCTTCTAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCACAGGTCAGTAACGTTATTGGCTCTAATTAGCCCTTCTAAAGG  850

seq1  CCCT-AAGGTTTTTTTTTTTTAAGCTAAATCATAATGGCTTATATATAAA  899
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGTTTTTTTTTTTTTAAGCTAAATCATAATGGCTTATATATAAA  900

seq1  GGGC-TTCAAATTCAACTAAGTCAACAAGTA-TTTATTATGCACCCGCTG  947
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGCTTTCAAATTCAACTAAGTCAACAAGTATTTTATTATGCACCCGCTG  950

seq1  TGTACTCCAAATGGGCTCAGCTACTGAAGAGAAAGCAAAGCAAATA--GA  995
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TGTACTCCAAATGGGCTCAGCTACTGAAGAGAAAGCAAAGCAAATAAGAA  1000

seq1  CATTTCTTTG-TGTGGCTCACCATG-AACTTAAGAAATTGTGTAACTCAT  1043
      |||||||||| |||||||||||||| ||||||||||||||||| ||||||
seq2  CATTTCTTTGTTGTGGCTCACCATGAAACTTAAGAAATTGTGT-ACTCAT  1049

seq1  CAAACAGCTCTGCCTAAAATTAGTGGGTGCCACAAAACCCCACCTCCCAA  1093
      |||||||||||| |||||||   |||||| |||||| |||  | ||||||
seq2  CAAACAGCTCTG-CTAAAATAGTTGGGTG-CACAAATCCCACCTTCCCAA  1097

seq1  TGCTGGTTCATCTCAGAGGTAAAAGAAAAAAGAAAAAAAAAATCTATTGC  1143
      |||| |||||||||  | |||||||         || ||| | ||| || 
seq2  TGCT-GTTCATCTC--AAGTAAAAG--------GAAGAAAGACCTA-TGG  1135

seq1  ACCTGTAAGAAAAAAGAGTTTGT--AGCGA  1171
      |||||| ||||||||||||||||  |||||
seq2  ACCTGTTAGAAAAAAGAGTTTGTTAAGCGA  1165


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