BAC Information

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BAC

Clone NameB6Ng01-273D11
Chromosome3 (Build37)
Map Location 132,580,370 - 132,734,948
singlet/doubletdoublet
Overlap geneNpnt, Gstcd
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858
Downstream geneInts12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D11.bB6Ng01-273D11.g
ACCGA074845GA074846
length1,197580
definitionB6Ng01-273D11.b B6Ng01-273D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,580,370 - 132,581,574)(132,734,369 - 132,734,948)
sequence
gaattctttatgtgtccaggatagaggtgccagggctcccacatggtttg
cctaccttggttgcaggttttcccagcaaatccagggtgacatttgcact
tgtttggcccgacgcactctccgtgtttgcactgtggttgacacacagct
gtggaaagaggacagtgtgtgtcaatcctgggtcagcagtgcagccccca
taaagcgctaaggtcacagaccagtgtgacgatacagcactaacaactta
caataaagtcgcaaaagttatgctaaaaatttctttctgcagcctacact
atgaacatgcatgtatgcatttatcatgtatgcatcacttgggactgaaa
aactttgtcacctgagcatactgctcaaataattaaaaaaggtcacacat
acttttacaaaaatgttcacacacaatttcaaacgtactctctcaagtac
aagtcaacaaaacgtttagtctgaacttactgggtttctatgaaatcaat
agagttttccaggctaggatgtgacttggtagtaaatactttcctagaat
gtgggcgacctgggtttgatcaacaatatggtcacaaaccaaaaagacat
aaatttcttattaaagatcaatgaattactttataggcaatcaaagccta
aaaataaagtgattaaaaatgaaacaaataaaaacaaagttcttcattac
ttctattcatagatattctcatcatctcggtccctcttaaccctggcgtg
cattacagttatttttttttcaacttatagtggcttcctgtatctcagca
aaattgaaagttctcagtttaaccttattgttctctaacaagcacactcc
cttctccgagaaaggcaagtcttttttccagctcagaagtttctctctgc
cttgtatcagggcgtttcatgggagcctttccttcctgggagcacctggc
aatgcctaaagacattgtggagtttgctgggcagataggagtagacagcc
taccatgttcagatgtcccactacaataaacttatctaaatgacaccaga
tgtcatgagccagatggtaaagaactgttctagccataccttatctggtc
atgatattacctctaaatatgaaaaataacagcatgatttctgactacag
acttgacaactattagcaatatttccatgttcttttcctagatttag

gaattctgatgaagtagcagctgtagatgagcaaagtgaccctttattta
taggaggaccaagaccgactatgaccaagttgatggtatttaccttgttt
tattacagttttctttaaaaaaaaaatccctttgagcatactttcccaac
taataaatcatcttctggcatcatcgattatgcatcttatttatagctag
tcaggtctttatttaccaaataatgtttctgctagtcttgttttcaagtc
aaaatacatagtttaaagtagtacttttttaaaaaataaataaataaata
ttcatggtgtgaaccaaaatggacatcctatctggtcattttgacctaaa
tttcctgtgttacagaactttgatttctgtctttattttggttatttatt
tagttactgtttcttggtctggtttattctgatgaacatgatggtctcca
ttccatccattttcatataagtgtcatgctttcattttttttttaactta
aattttttgagatttcatatatgagtattgtatttacatcattcctgcct
tccctgtctcttctccagttgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132580370_132581574
seq2: B6Ng01-273D11.b_49_1244

seq1  GAATTCTTTATGTGTCCAGGATAGAGGTGCCAGGGCTCCCACATGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTGTCCAGGATAGAGGTGCCAGGGCTCCCACATGGTTTG  50

seq1  CCTACCTTGGTTGCAGGTTTTCCCAGCAAATCCAGGGTGACATTTGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTGGTTGCAGGTTTTCCCAGCAAATCCAGGGTGACATTTGCACT  100

seq1  TGTTTGGCCCGACGCACTCTCCGTGTTTGCACTGTGGTTGACACACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCCCGACGCACTCTCCGTGTTTGCACTGTGGTTGACACACAGCT  150

seq1  GTGGAAAGAGGACAGTGTGTGTCAATCCTGGGTCAGCAGTGCAGCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAGGACAGTGTGTGTCAATCCTGGGTCAGCAGTGCAGCCCCCA  200

seq1  TAAAGCGCTAAGGTCACAGACCAGTGTGACGATACAGCACTAACAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGCTAAGGTCACAGACCAGTGTGACGATACAGCACTAACAACTTA  250

seq1  CAATAAAGTCGCAAAAGTTATGCTAAAAATTTCTTTCTGCAGCCTACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTCGCAAAAGTTATGCTAAAAATTTCTTTCTGCAGCCTACACT  300

seq1  ATGAACATGCATGTATGCATTTATCATGTATGCATCACTTGGGACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGCATGTATGCATTTATCATGTATGCATCACTTGGGACTGAAA  350

seq1  AACTTTGTCACCTGAGCATACTGCTCAAATAATTAAAAAAGGTCACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTCACCTGAGCATACTGCTCAAATAATTAAAAAAGGTCACACAT  400

seq1  ACTTTTACAAAAATGTTCACACACAATTTCAAACGTACTCTCTCAAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAAAAATGTTCACACACAATTTCAAACGTACTCTCTCAAGTAC  450

seq1  AAGTCAACAAAACGTTTAGTCTGAACTTACTGGGTTTCTATGAAATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACAAAACGTTTAGTCTGAACTTACTGGGTTTCTATGAAATCAAT  500

seq1  AGAGTTTTCCAGGCTAGGATGTGACTTGGTAGTAAATACTTTCCTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTCCAGGCTAGGATGTGACTTGGTAGTAAATACTTTCCTAGAAT  550

seq1  GTGGGCGACCTGGGTTTGATCAACAATATGGTCACAAACCAAAAAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGACCTGGGTTTGATCAACAATATGGTCACAAACCAAAAAGACAT  600

seq1  AAATTTCTTATTAAAGATCAATGAATTACTTTATAGGCAATCAAAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTATTAAAGATCAATGAATTACTTTATAGGCAATCAAAGCCTA  650

seq1  AAAATAAAGTGATTAAAAATGAAACAAATAAAAACAAAGTTCTTCATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGTGATTAAAAATGAAACAAATAAAAACAAAGTTCTTCATTAC  700

seq1  TTCTATTCATAGATATTCTCATCATCTCGGTCCCTCTTAACCCTGGCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCATAGATATTCTCATCATCTCGGTCCCTCTTAACCCTGGCGTG  750

seq1  CATTACAGTTATTTTTTTTTCAACTTATAGTGGCTTCCTGTATCTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGTTATTTTTTTTTCAACTTATAGTGGCTTCCTGTATCTCAGCA  800

seq1  AAATTGAAAGTTCTCAGTTTAACCTTATTGTTCTCTAACAAGCACACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAGTTCTCAGTTTAACCTTATTGTTCTCTAACAAGCACACTCC  850

seq1  CTTCTCCGAG-AAGGCAAGTC-TTTTTCCAGCTCAGAAGTTTCTCTCTGC  898
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CTTCTCCGAGAAAGGCAAGTCTTTTTTCCAGCTCAGAAGTTTCTCTCTGC  900

seq1  CTTGTATCAGGGGCGTTTCATGGGGAGCCTTTCCTTCCTGGGAGCACCTG  948
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CTTGTATCA-GGGCGTTTCAT-GGGAGCCTTTCCTTCCTGGGAGCACCTG  948

seq1  GCAATGCCTAAAGACATTGTGGAGTTTGCT-GGCAGATAGGGAGTAGACA  997
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GCAATGCCTAAAGACATTGTGGAGTTTGCTGGGCAGATA-GGAGTAGACA  997

seq1  GCCTACCATGTTCAGATGTCCCACCTACAAAATAAAC-TATCTAAATGAC  1046
      ||||||||||||||||||||||| ||||  ||||||| ||||||||||||
seq2  GCCTACCATGTTCAGATGTCCCA-CTAC--AATAAACTTATCTAAATGAC  1044

seq1  ACCAGAATGTCATGGAGCCAAGGATGGGAAAG-ACTGTTCTAG-CATACC  1094
      ||||| ||||||| ||||||  ||||| |||| |||||||||| ||||||
seq2  ACCAG-ATGTCAT-GAGCCA--GATGGTAAAGAACTGTTCTAGCCATACC  1090

seq1  CTATCTGTTCATGATATTA-CTCT-AATATGAAAAATAACAGCATGATTT  1142
       |||||| ||||||||||| |||| |||||||||||||||||||||||||
seq2  TTATCTGGTCATGATATTACCTCTAAATATGAAAAATAACAGCATGATTT  1140

seq1  CTGACTTCAAGGAGCTGACAACCTATTTAAAGCAAAATTATTCCATGTTC  1192
      |||||| ||  ||  |||||| |||||   ||||| ||  ||||||||||
seq2  CTGACTACA--GACTTGACAA-CTATT---AGCAATAT--TTCCATGTTC  1182

seq1  TTTT-CTAGATTTA  1205
      |||| |||||||||
seq2  TTTTCCTAGATTTA  1196


seq1: chr3_132734369_132734948
seq2: B6Ng01-273D11.g_67_646 (reverse)

seq1  ACACACACACAACTGGAGAAGAGACAGGGAAGGCAGGAATGATGTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAACTGGAGAAGAGACAGGGAAGGCAGGAATGATGTAAATA  50

seq1  CAATACTCATATATGAAATCTCAAAAAATTTAAGTTAAAAAAAAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCATATATGAAATCTCAAAAAATTTAAGTTAAAAAAAAAATGAA  100

seq1  AGCATGACACTTATATGAAAATGGATGGAATGGAGACCATCATGTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACACTTATATGAAAATGGATGGAATGGAGACCATCATGTTCATC  150

seq1  AGAATAAACCAGACCAAGAAACAGTAACTAAATAAATAACCAAAATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAACCAGACCAAGAAACAGTAACTAAATAAATAACCAAAATAAAG  200

seq1  ACAGAAATCAAAGTTCTGTAACACAGGAAATTTAGGTCAAAATGACCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATCAAAGTTCTGTAACACAGGAAATTTAGGTCAAAATGACCAGA  250

seq1  TAGGATGTCCATTTTGGTTCACACCATGAATATTTATTTATTTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTCCATTTTGGTTCACACCATGAATATTTATTTATTTATTTTTT  300

seq1  AAAAAAGTACTACTTTAAACTATGTATTTTGACTTGAAAACAAGACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTACTACTTTAAACTATGTATTTTGACTTGAAAACAAGACTAGC  350

seq1  AGAAACATTATTTGGTAAATAAAGACCTGACTAGCTATAAATAAGATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTATTTGGTAAATAAAGACCTGACTAGCTATAAATAAGATGCA  400

seq1  TAATCGATGATGCCAGAAGATGATTTATTAGTTGGGAAAGTATGCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGATGATGCCAGAAGATGATTTATTAGTTGGGAAAGTATGCTCAAA  450

seq1  GGGATTTTTTTTTTAAAGAAAACTGTAATAAAACAAGGTAAATACCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTTTTTTAAAGAAAACTGTAATAAAACAAGGTAAATACCATCA  500

seq1  ACTTGGTCATAGTCGGTCTTGGTCCTCCTATAAATAAAGGGTCACTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCATAGTCGGTCTTGGTCCTCCTATAAATAAAGGGTCACTTTGC  550

seq1  TCATCTACAGCTGCTACTTCATCAGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  TCATCTACAGCTGCTACTTCATCAGAATTC  580


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