BAC Information

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BAC

Clone NameB6Ng01-273J05
Chromosome3 (Build37)
Map Location 71,164,850 - 71,214,647
singlet/doubletdoublet
Overlap geneEG667377
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273J05.bB6Ng01-273J05.g
ACCGA075114GA075115
length1,2131,149
definitionB6Ng01-273J05.b B6Ng01-273J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,164,850 - 71,166,061)(71,213,512 - 71,214,647)
sequence
gaattcctgacttacaaagtttacggaatcttgctaccatttaaatactt
tctgttctgatcaggtagtattttgttctatggagttattatgaagtgat
atgaaagttaaaacaaaattgtgtctactttgatgcaaagaaaataatgc
aaaatagtagcgggtaagccttgatgagtatgaattttcttcaaaatgtg
gcagtaaaataattgaaaacccagttgaatgtgaaactattatatttata
aaattttctaattacctcatataccatattttcattccaactttgaacct
aaagattttgcacgattacaacttactttcagtatgtatacatttaagtt
aaactagatttaatgataatgttttgatttagataactgtagtctcagca
cttgtcttatgcatgcaggaatactgcaagattaaggattaccttgacca
catagcaaattctaggctgacttagcttcctagtgagactatgtctaaaa
gtctaatggttggtgatgttggtcagttggttacttagcattttcaagtc
catgagatgaaaaatcagctcaatgcaaacaaataaatgaagaaacacat
aaataaatacataagatgttctagtttatctgtctctaatatattgattg
acagttattcatttgtgactggaaagatttaacccacaatctctttacaa
tggaatcctttttttttcttgcaccctcattgttggtttaagttgctata
tgacttctgattcctaatctatatcaaagttttgttgttattaaaccaaa
taaaaatgtaaattatttatctttattaaaaacaagcaaaacatccttaa
tcttccttgcaatagttttgattaatggctgatgtgattcttttgagcct
accatttatctcttctagccagtttctcattttgttttacttcaagaaga
ctacatcatacatattaattaataagtgtaccaaaaagaaagcatttaaa
tgccattgcaaataaatttccatattttatttctagtctttatcatagaa
gaagaaagacatagtttatgtgcataagtgaaaaacagatgttagaataa
gaatcaatttctatattattatggttatatatgaagtctaattgatactg
tgaatgcatatctaaccttgaaccttcttattgccatctcacgggcacac
acacattttgttg

gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgaaaatcactttttaactttgaagtttt
tgatcgaaggcttttttttcttccccgttgtaaaatcttttgactatcag
ctactcaattgctggggtaagaaaatagtcttataaaatcagagctctac
caaacaaacatcttaatttgtttgcatgttttagcaacagatcaacgtta
tagatcttcagttcaaaaataccttcctgcatgtgtgcaattcataagac
acattgacctttcaatgtacacttaaacttcactgaaaggagaaattatg
catccttgttaactttcaaggaaaaatgaataaagtggatatagttttaa
gtaggtaactatatatttggtaatttacttctagtctgcttttttcactt
attgtgaacttctaaaatatatatgccatttttctagaatgtatcttttt
ggaactcctacgtgagtttatccctactgtcttagtcagggtttctattc
ctgcacaaacatcatgacaaagaagcaagctggggaggaaagggtttatt
tcagcttacaattccatactgttggtttgtcaccaaggaagtcaggactg
ggaactcaaacaggtcaggaagcaggagctgatgcagaggccacgggagg
gatgtttctttactggcttggctccccttggcctggttcagcctgctctc
ttatagaactcaagattaccaggcccagagaaatgggtcccacccaccaa
ggggcctttccccctggatcacttaatggagaaatggcttacaggtggta
atctcatggaggcaattcttcactggagctcgctcccaagtgataactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71164850_71166061
seq2: B6Ng01-273J05.b_43_1255

seq1  GAATTCCTGACTTACAAAGTTTACGGAATCTTGCTACCATTTAAATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTTACAAAGTTTACGGAATCTTGCTACCATTTAAATACTT  50

seq1  TCTGTTCTGATCAGGTAGTATTTTGTTCTATGGAGTTATTATGAAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGATCAGGTAGTATTTTGTTCTATGGAGTTATTATGAAGTGAT  100

seq1  ATGAAAGTTAAAACAAAATTGTGTCTACTTTGATGCAAAGAAAATAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTTAAAACAAAATTGTGTCTACTTTGATGCAAAGAAAATAATGC  150

seq1  AAAATAGTAGCGGGTAAGCCTTGATGAGTATGAATTTTCTTCAAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAGCGGGTAAGCCTTGATGAGTATGAATTTTCTTCAAAATGTG  200

seq1  GCAGTAAAATAATTGAAAACCCAGTTGAATGTGAAACTATTATATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAATAATTGAAAACCCAGTTGAATGTGAAACTATTATATTTATA  250

seq1  AAATTTTCTAATTACCTCATATACCATATTTTCATTCCAACTTTGAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTAATTACCTCATATACCATATTTTCATTCCAACTTTGAACCT  300

seq1  AAAGATTTTGCACGATTACAACTTACTTTCAGTATGTATACATTTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTGCACGATTACAACTTACTTTCAGTATGTATACATTTAAGTT  350

seq1  AAACTAGATTTAATGATAATGTTTTGATTTAGATAACTGTAGTCTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGATTTAATGATAATGTTTTGATTTAGATAACTGTAGTCTCAGCA  400

seq1  CTTGTCTTATGCATGCAGGAATACTGCAAGATTAAGGATTACCTTGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTATGCATGCAGGAATACTGCAAGATTAAGGATTACCTTGACCA  450

seq1  CATAGCAAATTCTAGGCTGACTTAGCTTCCTAGTGAGACTATGTCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAAATTCTAGGCTGACTTAGCTTCCTAGTGAGACTATGTCTAAAA  500

seq1  GTCTAATGGTTGGTGATGTTGGTCAGTTGGTTACTTAGCATTTTCAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGGTTGGTGATGTTGGTCAGTTGGTTACTTAGCATTTTCAAGTC  550

seq1  CATGAGATGAAAAATCAGCTCAATGCAAACAAATAAATGAAGAAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATGAAAAATCAGCTCAATGCAAACAAATAAATGAAGAAACACAT  600

seq1  AAATAAATACATAAGATGTTCTAGTTTATCTGTCTCTAATATATTGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACATAAGATGTTCTAGTTTATCTGTCTCTAATATATTGATTG  650

seq1  ACAGTTATTCATTTGTGACTGGAAAGATTTAACCCACAATCTCTTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATTCATTTGTGACTGGAAAGATTTAACCCACAATCTCTTTACAA  700

seq1  TGGAATCCTTTTTTTTTCTTGCACCCTCATTGTTGGTTTAAGTTGCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCTTTTTTTTTCTTGCACCCTCATTGTTGGTTTAAGTTGCTATA  750

seq1  TGACTTCTGATTCCTAATCTATATCAAAGTTTTGTTGTTATTAAACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGATTCCTAATCTATATCAAAGTTTTGTTGTTATTAAACCAAA  800

seq1  TAAAAATGTAAATTATTTATCTTTATTAAAAACAAGCAAAACATCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTAAATTATTTATCTTTATTAAAAACAAGCAAAACATCCTTAA  850

seq1  TCTTCCTTGCAATAGTTTTGATTAATGGCTGATGTGATTCTTTTGAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTGCAATAGTTTTGATTAATGGCTGATGTGATTCTTTTGAGCCT  900

seq1  ACCATTTATCTCTTCTAGCCAGTTTCTCATTTTGTTTTACTTCAAGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATCTCTTCTAGCCAGTTTCTCATTTTGTTTTACTTCAAGAAGA  950

seq1  CTACATCATACATATTAATTAATAAGTGTACCAAAAAGAAAGCAATTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTACATCATACATATTAATTAATAAGTGTACCAAAAAGAAAGC-ATTTAA  999

seq1  ATGCCATTGCAAAATAAATTTCCATATTTTATTTCTTAGTCTTTATCATA  1050
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  ATGCCATTGC-AAATAAATTTCCATATTTTATTTC-TAGTCTTTATCATA  1047

seq1  GGAAGAGAAAGACCATAGTTTATGTGCAT-AGTGAAAAACAGATGTTTAG  1099
      | |  ||||||| |||||||||||||||| |||||||||||||||||   
seq2  GAAGAAGAAAGA-CATAGTTTATGTGCATAAGTGAAAAACAGATGTTAGA  1096

seq1  ATAAGAATC-ATTTCTATATTAATAATGTATATTAATG-AGTCCTTTATT  1147
      ||||||||| ||||||||||| || |||  |||  ||| ||||  | |||
seq2  ATAAGAATCAATTTCTATATT-ATTATGGTTATATATGAAGTC--TAATT  1143

seq1  GATACTGTG-ATGC-TATCTATACTTAAAACCTTCTTATTGCCATCTCAC  1195
      ||||||||| |||| |||||| || |  ||||||||||||||||||||||
seq2  GATACTGTGAATGCATATCTA-ACCTTGAACCTTCTTATTGCCATCTCAC  1192

seq1  GG---CACAC-CATTTTGTTG  1212
      ||   ||||| ||||||||||
seq2  GGGCACACACACATTTTGTTG  1213


seq1: chr3_71213512_71214647
seq2: B6Ng01-273J05.g_68_1216 (reverse)

seq1  GAGTTATCACTGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGAT  50
      |||||||||||  | |  ||||| ||| ||| ||| ||||||||||||||
seq2  GAGTTATCACTTGGGAGCGAGCTCCAG-TGAAGAATTGCCTCCATGAGAT  49

seq1  --ACAACTGTAAGGCATTTTCTCAATT-AGTGATCAAGGGGGAAAGGCCC  97
         || ||||||| || |||||| ||| ||||||| ||||||||||||||
seq2  TACCACCTGTAAGCCA-TTTCTCCATTAAGTGATCCAGGGGGAAAGGCCC  98

seq1  CTT-GTGGGTGGGACC---ATCTCTGGG-CTGGTAATCTTGAGTTCTATA  142
      ||| ||||||||||||    |||||||| |||||||||||||||||||||
seq2  CTTGGTGGGTGGGACCCATTTCTCTGGGCCTGGTAATCTTGAGTTCTATA  148

seq1  AGAGAGCAGGCTGAACAAG--CCAGGGGAAGCAAGCCAGTAAAG-AACAT  189
      |||||||||||||||| ||  | ||||||  ||||||||||||| |||||
seq2  AGAGAGCAGGCTGAACCAGGCCAAGGGGAGCCAAGCCAGTAAAGAAACAT  198

seq1  CCCT-CCGTGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGTTTGAGTT-  237
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCTCCCGTGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGTTTGAGTTC  248

seq1  CCAGTCCTGACTTCCTTGGTGACAAA-CAACAGTATGGAATTGTAAGCTG  286
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGTCCTGACTTCCTTGGTGACAAACCAACAGTATGGAATTGTAAGCTG  298

seq1  -AATAAACCCTTTCCTCCCCAGCTTGCTTCTTTGTCATGATGTTTGTGCA  335
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACCCTTTCCTCCCCAGCTTGCTTCTTTGTCATGATGTTTGTGCA  348

seq1  GGAATAGAAACCCTGACTAAGACAGTAGGGATAAACTCACGTAGGAGTTC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAAACCCTGACTAAGACAGTAGGGATAAACTCACGTAGGAGTTC  398

seq1  CAAAAAGATACATTCTAGAAAAATGGCATATATATTTTAGAAGTTCACAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGATACATTCTAGAAAAATGGCATATATATTTTAGAAGTTCACAA  448

seq1  TAAGTGAAAAAAGCAGACTAGAAGTAAATTACCAAATATATAGTTACCTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAAAAGCAGACTAGAAGTAAATTACCAAATATATAGTTACCTA  498

seq1  CTTAAAACTATATCCACTTTATTCATTTTTCCTTGAAAGTTAACAAGGAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTATATCCACTTTATTCATTTTTCCTTGAAAGTTAACAAGGAT  548

seq1  GCATAATTTCTCCTTTCAGTGAAGTTTAAGTGTACATTGAAAGGTCAATG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTCTCCTTTCAGTGAAGTTTAAGTGTACATTGAAAGGTCAATG  598

seq1  TGTCTTATGAATTGCACACATGCAGGAAGGTATTTTTGAACTGAAGATCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATGAATTGCACACATGCAGGAAGGTATTTTTGAACTGAAGATCT  648

seq1  ATAACGTTGATCTGTTGCTAAAACATGCAAACAAATTAAGATGTTTGTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTTGATCTGTTGCTAAAACATGCAAACAAATTAAGATGTTTGTTT  698

seq1  GGTAGAGCTCTGATTTTATAAGACTATTTTCTTACCCCAGCAATTGAGTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGCTCTGATTTTATAAGACTATTTTCTTACCCCAGCAATTGAGTA  748

seq1  GCTGATAGTCAAAAGATTTTACAACGGGGAAGAAAAAAAAGCCTTCGATC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGTCAAAAGATTTTACAACGGGGAAGAAAAAAAAGCCTTCGATC  798

seq1  AAAAACTTCAAAGTTAAAAAGTGATTTTCACTGAAACTTATAGAGGAGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCAAAGTTAAAAAGTGATTTTCACTGAAACTTATAGAGGAGAA  848

seq1  AGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACA  898

seq1  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTA  948

seq1  ATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAA  998

seq1  AAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATA  1048

seq1  GGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGA  1098

seq1  AAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATT  1148

seq1  C  1136
      |
seq2  C  1149


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