BAC Information

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BAC

Clone NameB6Ng01-276H01
Chromosome3 (Build37)
Map Location 93,393,561 - 93,394,704
singlet/doubletsinglet
Overlap genenone
Upstream geneLce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10
Downstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276H01.bB6Ng01-276H01.g
ACCGA077221GA077222
length1961,146
definitionB6Ng01-276H01.b B6Ng01-276H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatggaaaaatctcaaatgactgagaaacacttaaaaaaatg
atcaagctgggcagtgcatgcctttaatcccagcacttgggaggcagagg
caggtagatttctgagttcaaggccagcctggtctacaaagtgagatcca
ggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaa
gaattctcttagttgtagggatcttttagaaagaaagtttggtcctgctt
cagaacttaatttgcttctaccttcagccctaggaccatatggaactggg
atctgtagcactaacaagagtgaattctttaacacgagaccataaataaa
aaaattttaaatttgatttccaggccttccatctattgaggctgtaaact
ccagatttgatggtgtgctgttaccatttttgtcagtgggacacaagcta
gagtctcctgggaagaggaaccttagttgagaaattgcattagtcagatt
agccagtgggtgtgtctgtgaggtatgatctctattggtgcaggaggttc
agttcactgtgggccatgacactcctgggcaggtggtcctgggctgtata
agaaaggaagctgagcaagccctggtaaagcaagccatgacacagtgttc
cttcatggtctctacttcagctcctgcctccttgttcctgcttcagtacc
tggtctgtcttcccccaatggtgaattatgatgtggaagagtaagtcaag
taaactctttcctctctaaattggtttcggtcaaagttttatcatagcaa
tacaaagaaaactagcacagatggcttttaactctccttgctccttctat
ttctaagaactgaacataggcactcatccatgctagagaagtgttctacc
accaagctacatcctcaatcctacttcctataggaatggtagaaatttat
gcatttagcatttattgggtacctgtccaaaagcatgtaatcttgaagta
gcccagagatggctgaagatgaggccggctttcccagtagtactcatctg
ccagctctgcactcatgcggacaggttggccctggtagactaaaacttgt
gaactttcccgtgattgttcagtgatgagacaagaacccaagtttcctta
gggcgatgtccgtttggtttgattaattattaaaaaagattgcccatttt
ccactagcaagggaaaaaatagacatcattcttagcttttttctttagca
ttctcgtgaagcacattttatcttggcaactctctggcccagaaaggaaa
cagatttttgtctacaggatggaatgttacattccaaggattctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93393561_93394704
seq2: B6Ng01-276H01.g_64_1209 (reverse)

seq1  GTAGAAAACTTTGGAATGTAACATTTCCATCCTGTTCACAAAAAAATCTG  50
      |||| || | ||||||||||||| |||||||||||  | | |||||||||
seq2  GTAG-AATCCTTGGAATGTAACA-TTCCATCCTGT--AGACAAAAATCTG  46

seq1  TTTCCTTTCTGGGCCAGAGAGT--GCAAGATAAAATGTTGCTTCAAGGAG  98
      ||||||||||||||||||||||   |||||||||||| ||||||| |   
seq2  TTTCCTTTCTGGGCCAGAGAGTTGCCAAGATAAAATG-TGCTTCACGAGA  95

seq1  ATGCTAA--GAAAAAGCTAAAGAATGATGTCTATTTTT--CCTTGCTAGT  144
      |||||||   |||||||| |||||||||||||||||||  ||||||||||
seq2  ATGCTAAAGAAAAAAGCT-AAGAATGATGTCTATTTTTTCCCTTGCTAGT  144

seq1  GGAAAATGGGGCAATC-TTTTTAATAATTAATC-AACCAAACGGACATCG  192
      ||||||| |||||||| |||||||||||||||| ||||||||||||||||
seq2  GGAAAAT-GGGCAATCTTTTTTAATAATTAATCAAACCAAACGGACATCG  193

seq1  CCCTAAGGAAACTTGGGTTCTTGTCTCATCACTGAACAATCACGGG-AAG  241
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCTAAGGAAACTTGGGTTCTTGTCTCATCACTGAACAATCACGGGAAAG  243

seq1  TTCACAAGTTTTAGTCTACCAGGGCCAACCTGTCCGCATGAGTGCAGAGC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGTTTTAGTCTACCAGGGCCAACCTGTCCGCATGAGTGCAGAGC  293

seq1  TGGCAGATGAGTACTACTGGGAAAGCCGGCCTCATCTTCAGCCATCTCTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATGAGTACTACTGGGAAAGCCGGCCTCATCTTCAGCCATCTCTG  343

seq1  GGCTACTTCAAGATTACATGCTTTTGGACAGGTACCCAATAAATGCTAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTCAAGATTACATGCTTTTGGACAGGTACCCAATAAATGCTAAA  393

seq1  TGCATAAATTTCTACCATTCCTATAGGAAGTAGGATTGAGGATGTAGCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATTTCTACCATTCCTATAGGAAGTAGGATTGAGGATGTAGCTT  443

seq1  GGTGGTAGAACACTTCTCTAGCATGGATGAGTGCCTATGTTCAGTTCTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGAACACTTCTCTAGCATGGATGAGTGCCTATGTTCAGTTCTTA  493

seq1  GAAATAGAAGGAGCAAGGAGAGTTAAAAGCCATCTGTGCTAGTTTTCTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAGGAGCAAGGAGAGTTAAAAGCCATCTGTGCTAGTTTTCTTT  543

seq1  GTATTGCTATGATAAAACTTTGACCGAAACCAATTTAGAGAGGAAAGAGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTATGATAAAACTTTGACCGAAACCAATTTAGAGAGGAAAGAGT  593

seq1  TTACTTGACTTACTCTTCCACATCATAATTCACCATTGGGGGAAGACAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGACTTACTCTTCCACATCATAATTCACCATTGGGGGAAGACAGA  643

seq1  CCAGGTACTGAAGCAGGAACAAGGAGGCAGGAGCTGAAGTAGAGACCATG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACTGAAGCAGGAACAAGGAGGCAGGAGCTGAAGTAGAGACCATG  693

seq1  AAGGAACACTGTGTCATGGCTTGCTTTACCAGGGCTTGCTCAGCTTCCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACTGTGTCATGGCTTGCTTTACCAGGGCTTGCTCAGCTTCCTT  743

seq1  TCTTATACAGCCCAGGACCACCTGCCCAGGAGTGTCATGGCCCACAGTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACAGCCCAGGACCACCTGCCCAGGAGTGTCATGGCCCACAGTGA  793

seq1  ACTGAACCTCCTGCACCAATAGAGATCATACCTCACAGACACACCCACTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTCCTGCACCAATAGAGATCATACCTCACAGACACACCCACTG  843

seq1  GCTAATCTGACTAATGCAATTTCTCAACTAAGGTTCCTCTTCCCAGGAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTGACTAATGCAATTTCTCAACTAAGGTTCCTCTTCCCAGGAGA  893

seq1  CTCTAGCTTGTGTCCCACTGACAAAAATGGTAACAGCACACCATCAAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTTGTGTCCCACTGACAAAAATGGTAACAGCACACCATCAAATC  943

seq1  TGGAGTTTACAGCCTCAATAGATGGAAGGCCTGGAAATCAAATTTAAAAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTACAGCCTCAATAGATGGAAGGCCTGGAAATCAAATTTAAAAT  993

seq1  TTTTTTATTTATGGTCTCGTGTTAAAGAATTCACTCTTGTTAGTGCTACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTATGGTCTCGTGTTAAAGAATTCACTCTTGTTAGTGCTACA  1043

seq1  GATCCCAGTTCCATATGGTCCTAGGGCTGAAGGTAGAAGCAAATTAAGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGTTCCATATGGTCCTAGGGCTGAAGGTAGAAGCAAATTAAGTT  1093

seq1  CTGAAGCAGGACCAAACTTTCTTTCTAAAAGATCCCTACAACTAAGAGAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGGACCAAACTTTCTTTCTAAAAGATCCCTACAACTAAGAGAA  1143

seq1  TTC  1144
      |||
seq2  TTC  1146