BAC Information

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BAC

Clone NameB6Ng01-279I09
Chromosome3 (Build37)
Map Location 157,526,859 - 157,689,446
singlet/doubletdoublet
Overlap geneLOC624684, Cth, Ankrd13c, Sfrs11
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686
Downstream geneLrrc40, Lrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I09.bB6Ng01-279I09.g
ACCGA079483GA079484
length1,1961,149
definitionB6Ng01-279I09.b B6Ng01-279I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,526,859 - 157,528,060)(157,688,302 - 157,689,446)
sequence
gaattccaggacattcaggactacagggttatatagagaccctgtttcaa
aatacaaggggtaggagagagagagagagagagagagagagagagagaga
gagagaaccatattccaacacagtactacaaactcaggcctatactcaac
tgtttgtaagtaaagctaatcaataaagaagtaactggaaaaatctatat
aactagaatcatttttatcaaggagaaatgggagccccagtcatcttcac
acatcccacccagtatctaccttcatatgacttcatcatttcaccctgcc
attattatgacatcacttccagaaaatcctacccaggaatataaaagctg
gaaataacctttctgtttatttcaaagaatctcatgaaagaacatggaat
cttaaaaagaaaaagaaaacataaataagagttcacacacatcccaagac
acttggcatccttcacctcaaaattctacaaatgtaaaactgtcacagca
caacctatcaattaagtgcctgtattaaaggagatgtaacctagacttca
aagcactcatgaacatactggctctggattcttccattaaaaagctcaga
cactgccaaagatgggcttctccggtcatcataagcataattcaactata
tcttatcactatttttggaaattttctgaaggagccagcattcagagcca
tgagtagaaacaagaaaacatcacaaatcagaggaatacaagaaacccag
agctggagagatggctcagcagttaagagcacttgctgttcttgcagagg
gccagagttcaattcccaatatacccacggaggctcacgaccatttgcaa
ctccatttccaggggatttgatgaagtcttctgacctccacagactccaa
tcacgcaacatggtgcatataaatacatgcaggcaaacactcacatataa
aatgaacaatttaatatctaatttttttaaaaaagaaaaagaaagcccta
acacatctctagtcaaaatcaaagaggaggaatcgtattctgggtaattg
tacaggcaaataagacaagaccaaagctcctaaaggaatgtcagaaggtg
ggccctgaagaatggggtgctagtaacacctggccatacctttgaaggct
taagcgaacacgccttgacctctgtattagcagtatttatcagagt

gaattccaaactctgagatctattaatgttaagtattaagaagtcccaaa
ggtaaacattcatatcatcctcacaggaaccttcaaattaatgcatgatg
cttatgttctaaagtcagtagctaagtcagctttatttcctttattctct
cactcactccaaccttaaaatagaataaaaacaaaaaccacgtgctgaat
tccagtataccaagggttgcaataattttagttttgtaaaagtttaagat
ttcctatagtttaggtgccagatggacactgggtgtttgtttttaatggc
agattttcttgttcttgttatattttctagaatatctcaaaataataaac
tcttctctctgttgtgtgtgtgacttttgtagtggagaaggcacatgcaa
aaccctcccagatggctggacacagtgggtgctctgcagctgcaggctct
agacactaactaaaccagcgagcactcgagcccccaagtgtttcctgctg
tcaccatttgttaactgcattttctctctttttacgttttaggctgttac
agtaatttgacaggaaaaaaaaatgagcaggtttttggatctaaaagcca
ctgtgacaggacagcactattttaatgccattttgtaaaacttttctaag
gcatactttacagttagcttgttcccagtaaactgctgcttggtttgctt
ttggtaactataaatctttatttgaggaaatcattgacatgatatacgta
ctaaattttaacttaataattgaatatactgtccatgatctacatgcttt
ccctttcctttaataaactggttagtggaagctgtatcttgtaattgttg
ctttttagatgcttcttagataattgaagacaaatgtgaagatttgccac
catactttgtgaaagttgtgaaatgtctaatagagaattgcctctggttt
ttctaagaaattattattcggagataagttaaggcatgcttattttgggt
aacagtgtactaaagtgagagatgtgaggccagttaacatgtttctatga
aagaaaaagtcagaaaagaaggctgattagtgtattttggataagccaat
tccttttattcagtatgccttcttaagataggactagccacccacctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157526859_157528060
seq2: B6Ng01-279I09.b_47_1242

seq1  GAATTCCAGGACATTCAGGACTACAGGGTTATATAGAGACCCTGTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATTCAGGACTACAGGGTTATATAGAGACCCTGTTTCAA  50

seq1  AATACAAGGGGTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGGGTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAACCATATTCCAACACAGTACTACAAACTCAGGCCTATACTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCATATTCCAACACAGTACTACAAACTCAGGCCTATACTCAAC  150

seq1  TGTTTGTAAGTAAAGCTAATCAATAAAGAAGTAACTGGAAAAATCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAAGTAAAGCTAATCAATAAAGAAGTAACTGGAAAAATCTATAT  200

seq1  AACTAGAATCATTTTTATCAAGGAGAAATGGGAGCCCCAGTCATCTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATCATTTTTATCAAGGAGAAATGGGAGCCCCAGTCATCTTCAC  250

seq1  ACATCCCACCCAGTATCTACCTTCATATGACTTCATCATTTCACCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCACCCAGTATCTACCTTCATATGACTTCATCATTTCACCCTGCC  300

seq1  ATTATTATGACATCACTTCCAGAAAATCCTACCCAGGAATATAAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGACATCACTTCCAGAAAATCCTACCCAGGAATATAAAAGCTG  350

seq1  GAAATAACCTTTCTGTTTATTTCAAAGAATCTCATGAAAGAACATGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACCTTTCTGTTTATTTCAAAGAATCTCATGAAAGAACATGGAAT  400

seq1  CTTAAAAAGAAAAAGAAAACATAAATAAGAGTTCACACACATCCCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGAAAAAGAAAACATAAATAAGAGTTCACACACATCCCAAGAC  450

seq1  ACTTGGCATCCTTCACCTCAAAATTCTACAAATGTAAAACTGTCACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCATCCTTCACCTCAAAATTCTACAAATGTAAAACTGTCACAGCA  500

seq1  CAACCTATCAATTAAGTGCCTGTATTAAAGGAGATGTAACCTAGACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATCAATTAAGTGCCTGTATTAAAGGAGATGTAACCTAGACTTCA  550

seq1  AAGCACTCATGAACATACTGGCTCTGGATTCTTCCATTAAAAAGCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCATGAACATACTGGCTCTGGATTCTTCCATTAAAAAGCTCAGA  600

seq1  CACTGCCAAAGATGGGCTTCTCCGGTCATCATAAGCATAATTCAACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAAAGATGGGCTTCTCCGGTCATCATAAGCATAATTCAACTATA  650

seq1  TCTTATCACTATTTTTGGAAATTTTCTGAAGGAGCCAGCATTCAGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCACTATTTTTGGAAATTTTCTGAAGGAGCCAGCATTCAGAGCCA  700

seq1  TGAGTAGAAACAAGAAAACATCACAAATCAGAGGAATACAAGAAAACCCA  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGTAGAAACAAGAAAACATCACAAATCAGAGGAATACAAG-AAACCCA  749

seq1  GAGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTTGCTGTTCTTGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTTGCTGTTCTTGCAGAG  799

seq1  GGCCAGAGTTCAATTCCCAATATACCCACGGAGGCTCACGACCATTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTTCAATTCCCAATATACCCACGGAGGCTCACGACCATTTGCA  849

seq1  ACTCCATTTCCAGGGGATTTGATGAAGTCTTCTGACCTCCACAGACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTCCAGGGGATTTGATGAAGTCTTCTGACCTCCACAGACTCCA  899

seq1  ATCACGCAACATGGTGCATATAAATACATGCAGGCAAAACACTCACATAT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCACGCAACATGGTGCATATAAATACATGCAGGC-AAACACTCACATAT  948

seq1  AAAATGAACAAATTTAATATCTAATTTTTTTTAAAAAG-AAAAGAAAGCC  999
      ||||||||| ||||||||||||||||||||| |||||| |||||||||||
seq2  AAAATGAAC-AATTTAATATCTAATTTTTTTAAAAAAGAAAAAGAAAGCC  997

seq1  CTAACACATCTCTAGTCAAAATCAAAGAGGAGGAATCGTATCTTGGGTAA  1049
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CTAACACATCTCTAGTCAAAATCAAAGAGGAGGAATCGTATTCTGGGTAA  1047

seq1  TTGTACAGGCAAATAAGACAAAAGACCAAGGCTCCTTAAGGGATGTCAG-  1098
      |||||||||||||||||||  |||||||| |||||| |||| ||||||| 
seq2  TTGTACAGGCAAATAAGAC--AAGACCAAAGCTCCTAAAGGAATGTCAGA  1095

seq1  AGGTGGG-CCTGAAGAATGGGGTGCTAGTAACAACTGTGCATAC--TTGA  1145
      ||||||| ||||||||||||||||||||||||| |||  |||||  ||||
seq2  AGGTGGGCCCTGAAGAATGGGGTGCTAGTAACACCTGGCCATACCTTTGA  1145

seq1  AGGGCTGAGGCAGAACAACGCCTTTGTCCTCTGTATTAAGCAGTTATTTA  1195
      | |||| | || |||| ||||| ||| |||||||||| ||||| ||||||
seq2  A-GGCTTAAGC-GAAC-ACGCC-TTGACCTCTGTATT-AGCAG-TATTTA  1189

seq1  TCAGAGT  1202
      |||||||
seq2  TCAGAGT  1196


seq1: chr3_157688302_157689446
seq2: B6Ng01-279I09.g_61_1209 (reverse)

seq1  TAAGGT-GGTGGTTAAGTCTTATCTTAAAGAGGCATACTGAAATAAAAGG  49
      |||||| ||||| | |||| ||||||||  |||||||||| |||||||||
seq2  TAAGGTGGGTGGCT-AGTCCTATCTTAAGAAGGCATACTG-AATAAAAGG  48

seq1  AATT-GCTTATCCAAAATACACTAAATCAG-CTTC-TTTCTGAC-TTTTC  95
      |||| |||||||||||||||||| |||||| |||| |||||||| |||||
seq2  AATTGGCTTATCCAAAATACACT-AATCAGCCTTCTTTTCTGACTTTTTC  97

seq1  TTTCATAGAAACATTGTTACTGGCCTCACATCTCTCACTTTAGTACACTG  145
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  TTTCATAGAAACATGTTAACTGGCCTCACATCTCTCACTTTAGTACACTG  147

seq1  TTA-CCAAAAT-AGCATGCCTTAACTTATCTCCGAAT-ATAATTTCTTTA  192
      ||| ||||||| ||||||||||||||||||||||||| |||||||| |||
seq2  TTACCCAAAATAAGCATGCCTTAACTTATCTCCGAATAATAATTTC-TTA  196

seq1  GAAAAACCAGAGGCAATTCTCTATTAGACATTTCACAACTTTCACAAAGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAGAGGCAATTCTCTATTAGACATTTCACAACTTTCACAAAGT  246

seq1  ATGGTGGCAAATCTTCACATTTGTCTTCAATTATCTAAGAAGCATCTAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCAAATCTTCACATTTGTCTTCAATTATCTAAGAAGCATCTAAA  296

seq1  AAGCAACAATTACAAGATACAGCTTCCACTAACCAGTTTATTAAAGGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAATTACAAGATACAGCTTCCACTAACCAGTTTATTAAAGGAAA  346

seq1  GGGAAAGCATGTAGATCATGGACAGTATATTCAATTATTAAGTTAAAATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCATGTAGATCATGGACAGTATATTCAATTATTAAGTTAAAATT  396

seq1  TAGTACGTATATCATGTCAATGATTTCCTCAAATAAAGATTTATAGTTAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGTATATCATGTCAATGATTTCCTCAAATAAAGATTTATAGTTAC  446

seq1  CAAAAGCAAACCAAGCAGCAGTTTACTGGGAACAAGCTAACTGTAAAGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAACCAAGCAGCAGTTTACTGGGAACAAGCTAACTGTAAAGTA  496

seq1  TGCCTTAGAAAAGTTTTACAAAATGGCATTAAAATAGTGCTGTCCTGTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGAAAAGTTTTACAAAATGGCATTAAAATAGTGCTGTCCTGTCA  546

seq1  CAGTGGCTTTTAGATCCAAAAACCTGCTCATTTTTTTTTCCTGTCAAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTTTAGATCCAAAAACCTGCTCATTTTTTTTTCCTGTCAAATT  596

seq1  ACTGTAACAGCCTAAAACGTAAAAAGAGAGAAAATGCAGTTAACAAATGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACAGCCTAAAACGTAAAAAGAGAGAAAATGCAGTTAACAAATGG  646

seq1  TGACAGCAGGAAACACTTGGGGGCTCGAGTGCTCGCTGGTTTAGTTAGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGGAAACACTTGGGGGCTCGAGTGCTCGCTGGTTTAGTTAGTG  696

seq1  TCTAGAGCCTGCAGCTGCAGAGCACCCACTGTGTCCAGCCATCTGGGAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGCCTGCAGCTGCAGAGCACCCACTGTGTCCAGCCATCTGGGAGG  746

seq1  GTTTTGCATGTGCCTTCTCCACTACAAAAGTCACACACACAACAGAGAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATGTGCCTTCTCCACTACAAAAGTCACACACACAACAGAGAGA  796

seq1  AGAGTTTATTATTTTGAGATATTCTAGAAAATATAACAAGAACAAGAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTATTATTTTGAGATATTCTAGAAAATATAACAAGAACAAGAAAA  846

seq1  TCTGCCATTAAAAACAAACACCCAGTGTCCATCTGGCACCTAAACTATAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATTAAAAACAAACACCCAGTGTCCATCTGGCACCTAAACTATAG  896

seq1  GAAATCTTAAACTTTTACAAAACTAAAATTATTGCAACCCTTGGTATACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAAACTTTTACAAAACTAAAATTATTGCAACCCTTGGTATACT  946

seq1  GGAATTCAGCACGTGGTTTTTGTTTTTATTCTATTTTAAGGTTGGAGTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGCACGTGGTTTTTGTTTTTATTCTATTTTAAGGTTGGAGTGA  996

seq1  GTGAGAGAATAAAGGAAATAAAGCTGACTTAGCTACTGACTTTAGAACAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAATAAAGGAAATAAAGCTGACTTAGCTACTGACTTTAGAACAT  1046

seq1  AAGCATCATGCATTAATTTGAAGGTTCCTGTGAGGATGATATGAATGTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATGCATTAATTTGAAGGTTCCTGTGAGGATGATATGAATGTTT  1096

seq1  ACCTTTGGGACTTCTTAATACTTAACATTAATAGATCTCAGAGTTTGGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGGACTTCTTAATACTTAACATTAATAGATCTCAGAGTTTGGAA  1146

seq1  TTC  1145
      |||
seq2  TTC  1149


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