BAC Information

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BAC

Clone NameB6Ng01-279I19
Chromosome3 (Build37)
Map Location 128,804,035 - 128,924,302
singlet/doubletdoublet
Overlap genePitx2
Upstream geneEG668828, LOC100043393, EG668831
Downstream geneEnpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I19.bB6Ng01-279I19.g
ACCGA079502GA079503
length6861,143
definitionB6Ng01-279I19.b B6Ng01-279I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,923,616 - 128,924,302)(128,804,035 - 128,805,189)
sequence
gaattctagttaaaccaacaaactaggccgagactcaccccttaaacgtg
tgctcccaagtcatcctggatcagacaagcagaaaaagcaaaataggcca
gctgccctctttcgcgcttctagacaagatccccaaatcttccacccagc
ttgctccccttctcaactctccccaaccaggccaagactctgagaggcag
cggctggttccctcctacccgcctcccccgttccagaaggcaaagtccac
ccttggtgaccgctttcctctccactgctctcaagtgaacaaggacggag
gtgaccctcgtccaaaggccttctctctaactcctctgcccccccccccc
accaccaccaccgcgtgatcctgcaacaggacagggcgcgaagctttcaa
aagaaagaaaaagaaagtcaatgtgcgcccgagcagttgatcttaaatcg
gggatattatctgagatctgtttaagcggctgcagcaggtcctcccagaa
caaagactgggtgtctgaactctcaaagctcctaggtaaagtttcggcga
gataaaaaagcaacttaagcgtaaaaacacccgttttctcggcttcagaa
aaccggaggccacttttcttttccagttcctaggctggtgtttgtcttag
catactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctttttgctttagagataaacatacgaatgcttacagatgcaata
atactatccctgccttggcttaaaaataacccagtggtgtaaagattaaa
gatcactgtgctgtctgcttgagacatgaaggcagtgggaactgctaata
ggagtcagctggttttattttatttagaaagtattttttaacaaacctct
taaaataatttttaaaagtggggtggtaaaggcatttataaaactagagg
gtcttgcttttaagaaagactttctaccaccttgaaataagccatttaaa
cttcttctatgaataaatctcctttttgtataacagttatataaatgaga
agttgttggcacatgaggaaaagagtgatcttgtgccacattaaaaaagg
taacaggcatgaagtcacatgagccgcattgaggcggcctcagaaccagc
gctctgcttctgcacggcatccctggatttacatggtgactaaacagagg
aattagatgggttttgctttgcacacagagccttaaaacgtggttaccta
caataaacagaaggcttgactcctttagacaataatttttttaatgtata
aaacacatgtagtattttctctctgagaagatactggattctaaaaatat
caagaaagtaccaagtaaatattattaatagtgactgataattagtctta
tttatacaaatcccattttcttatcaacatttaaaaacatgatataagtt
ttgaattgtaggctttttccccaaagtgtgaaacaataataaagaaagta
atagtaagctaaaatttgcaggaaggttcatttaatgaatgcactaagaa
tgcacccactgccttcaattctactatgcaaatataggcagtaatttgga
tggcctgaagcatgtattctgactaaaatgaaagagattataagctctat
ataaggcatggacaccaggctgagtttccagctctatcagtccacccaca
gtctttgtgtgtggaaaacattactaacctttgctgtatctacagaaagt
atctaaattgtctccttgttccaagactcagttgctgtctagagaaacaa
ccagcactgacgaaatggatgtgttgccatccataacaagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128923616_128924302
seq2: B6Ng01-279I19.b_49_734 (reverse)

seq1  ACACACACACACACACACACACACACACACAGTATGCTAAGACAAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGTATGCTAAGACAAACACC  50

seq1  AGCCTAGGAACTGGAAAAGAAAAGTGGCCTCCGGTTTTCTGAAGCCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGAACTGGAAAAGAAAAGTGGCCTCCGGTTTTCTGAAGCCGAGA  100

seq1  AAACGGGTGTTTTTACGCTTAAGTTGCTTTTTTATCTCGCCGAAACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGTGTTTTTACGCTTAAGTTGCTTTTTTATCTCGCCGAAACTTTA  150

seq1  CCTAGGAGCTTTGAGAGTTCAGACACCCAGTCTTTGTTCTGGGAGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGCTTTGAGAGTTCAGACACCCAGTCTTTGTTCTGGGAGGACCT  200

seq1  GCTGCAGCCGCTTAAACAGATCTCAGATAATATCCCCGATTTAAGATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCGCTTAAACAGATCTCAGATAATATCCCCGATTTAAGATCAA  250

seq1  CTGCTCGGGCGCACATTGACTTTCTTTTTCTTTCTTTTGAAAGCTTCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGGGCGCACATTGACTTTCTTTTTCTTTCTTTTGAAAGCTTCGCG  300

seq1  CCCTGTCCTGTTGCAGGATCACGCGGTGGTGGTGGTGGGGGGGGGGGGGC  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCTGTCCTGTTGCAGGATCACGCGGTGGTGGTGGT-GGGGGGGGGGGGC  349

seq1  AGAGGAGTTAGAGAGAAGGCCTTTGGACGAGGGTCACCTCCGTCCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTTAGAGAGAAGGCCTTTGGACGAGGGTCACCTCCGTCCTTGTT  399

seq1  CACTTGAGAGCAGTGGAGAGGAAAGCGGTCACCAAGGGTGGACTTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAGCAGTGGAGAGGAAAGCGGTCACCAAGGGTGGACTTTGCCT  449

seq1  TCTGGAACGGGGGAGGCGGGTAGGAGGGAACCAGCCGCTGCCTCTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACGGGGGAGGCGGGTAGGAGGGAACCAGCCGCTGCCTCTCAGAG  499

seq1  TCTTGGCCTGGTTGGGGAGAGTTGAGAAGGGGAGCAAGCTGGGTGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCTGGTTGGGGAGAGTTGAGAAGGGGAGCAAGCTGGGTGGAAGA  549

seq1  TTTGGGGATCTTGTCTAGAAGCGCGAAAGAGGGCAGCTGGCCTATTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATCTTGTCTAGAAGCGCGAAAGAGGGCAGCTGGCCTATTTTGC  599

seq1  TTTTTCTGCTTGTCTGATCCAGGATGACTTGGGAGCACACGTTTAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCTTGTCTGATCCAGGATGACTTGGGAGCACACGTTTAAGGGG  649

seq1  TGAGTCTCGGCCTAGTTTGTTGGTTTAACTAGAATTC  687
      |||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCGGCCTAGTTTGTTGGTTTAACTAGAATTC  686

seq1: chr3_128804035_128805189
seq2: B6Ng01-279I19.g_65_1207

seq1  GAATTCTTTTTGCTTTAGAGATAAACATACGAATGCTTACAGATGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCTTTAGAGATAAACATACGAATGCTTACAGATGCAATA  50

seq1  ATACTATCCCTGCCTTGGCTTAAAAATAACCCAGTGGTGTAAAGATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCCCTGCCTTGGCTTAAAAATAACCCAGTGGTGTAAAGATTAAA  100

seq1  GATCACTGTGCTGTCTGCTTGAGACATGAAGGCAGTGGGAACTGCTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGTGCTGTCTGCTTGAGACATGAAGGCAGTGGGAACTGCTAATA  150

seq1  GGAGTCAGCTGGTTTTATTTTATTTAGAAAGTATTTTTTAACAAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGCTGGTTTTATTTTATTTAGAAAGTATTTTTTAACAAACCTCT  200

seq1  TAAAATAATTTTTAAAAGTGGGGTGGTAAAGGCATTTATAAAACTAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTTTAAAAGTGGGGTGGTAAAGGCATTTATAAAACTAGAGG  250

seq1  GTCTTGCTTTTAAGAAAGACTTTCTACCACCTTGAAATAAGCCATTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTTTAAGAAAGACTTTCTACCACCTTGAAATAAGCCATTTAAA  300

seq1  CTTCTTCTATGAATAAATCTCCTTTTTGTATAACAGTTATATAAATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTATGAATAAATCTCCTTTTTGTATAACAGTTATATAAATGAGA  350

seq1  AGTTGTTGGCACATGAGGAAAAGAGTGATCTTGTGCCACATTAAAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGGCACATGAGGAAAAGAGTGATCTTGTGCCACATTAAAAAAGG  400

seq1  TAACAGGCATGAAGTCACATGAGCCGCATTGAGGCGGCCTCAGAACCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCATGAAGTCACATGAGCCGCATTGAGGCGGCCTCAGAACCAGC  450

seq1  GCTCTGCTTCTGCACGGCATCCCTGGATTTACATGGTGACTAAACAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTTCTGCACGGCATCCCTGGATTTACATGGTGACTAAACAGAGG  500

seq1  AATTAGATGGGTTTTGCTTTGCACACAGAGCCTTAAAACGTGGTTACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATGGGTTTTGCTTTGCACACAGAGCCTTAAAACGTGGTTACCTA  550

seq1  CAATAAACAGAAGGCTTGACTCCTTTAGACAATAATTTTTTTAATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACAGAAGGCTTGACTCCTTTAGACAATAATTTTTTTAATGTATA  600

seq1  AAACACATGTAGTATTTTCTCTCTGAGAAGATACTGGATTCTAAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGTAGTATTTTCTCTCTGAGAAGATACTGGATTCTAAAAATAT  650

seq1  CAAGAAAGTACCAAGTAAATATTATTAATAGTGACTGATAATTAGTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTACCAAGTAAATATTATTAATAGTGACTGATAATTAGTCTTA  700

seq1  TTTATACAAATCCCATTTTCTTATCAACATTTAAAAACATGATATAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAAATCCCATTTTCTTATCAACATTTAAAAACATGATATAAGTT  750

seq1  TTGAATTGTAGGCTTTTTCCCCAAAGTGTGAAACAATAATAAAGAAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGTAGGCTTTTTCCCCAAAGTGTGAAACAATAATAAAGAAAGTA  800

seq1  ATAGTAAGCTAAAATTTGCAGGAAGGTTCATTTAATGAATGCACTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGCTAAAATTTGCAGGAAGGTTCATTTAATGAATGCACTAAGAA  850

seq1  TGCACCCACTGCCTTCAATTCTACTATGCAAATATAGGCAGTAATTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCACTGCCTTCAATTCTACTATGCAAATATAGGCAGTAATTTGGA  900

seq1  TGGCCTGAAAGCATGTATTCTGACTAAAATGAAAGAGATTATAAGCTCTA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTG-AAGCATGTATTCTGACTAAAATGAAAGAGATTATAAGCTCTA  949

seq1  TATAAGGCATGGACACCAGGCTGAGTTTCCAGCTCTATCAGTCCA-CCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATAAGGCATGGACACCAGGCTGAGTTTCCAGCTCTATCAGTCCACCCAC  999

seq1  AGTCTTTGTGTGTTGGGAAAACATTTACTAACCTTTGCTGTATCTACCAG  1049
      |||||||||||||  |||||||| |||||||||||||||||||||| |||
seq2  AGTCTTTGTGTGT--GGAAAACA-TTACTAACCTTTGCTGTATCTA-CAG  1045

seq1  AAAGTATTCTAAA-TGTCTCCCTTGTTCAAGGAC-CAGTTTGCTGTCCTA  1097
      |||||| |||||| ||||| |||||||| | ||| ||| ||||||||   
seq2  AAAGTA-TCTAAATTGTCT-CCTTGTTCCAAGACTCAG-TTGCTGTC--T  1090

seq1  AGAGAAACAACCAACACTGACAGAAAAAGGAATGTGTTGCATACAATTAA  1147
      ||||||||||||| |||||||    ||| | |||||||||   | ||  |
seq2  AGAGAAACAACCAGCACTGAC---GAAATGGATGTGTTGCCATCCAT--A  1135

seq1  ACAAGTAT  1155
      ||||||||
seq2  ACAAGTAT  1143