BAC Information

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BAC

Clone NameB6Ng01-280D15
Chromosome3 (Build37)
Map Location 28,941,449 - 28,942,560
singlet/doubletsinglet
Overlap genenone
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream gene6130401L20Rik, LOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D15.bB6Ng01-280D15.g
ACCGA080005GA080006
length1,1071,189
definitionB6Ng01-280D15.b B6Ng01-280D15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaccattttccatcagtttatatcccccacaagatattttata
ccattggcagttaaatagcgaataatttatgtattttagataggcaagag
gcatgccaaggaatgtatgcagagatcagagaattaagtccaggaatcac
atttctccttccaccatggcttccgggaatcaaactcagaatgtcagact
tggcagcaagtgccatgacctgtggaggcatcttgccagcctactgaata
acttttaaaatgcatatcatattagactctacctagagtgtgtaaaatgt
cattgtaaggtggagcctgccaattgccaatatttagcctattttcccat
gtaaacagaatgctgattcagagtccagctagaagttggttttctaagta
tttatttatttatattatttatatgagtcttcagacacaccagaagaggt
tatcggatctcataacagatagttgtgagccaccacgtggatggtgggaa
ttgaactcaggacctttaggaagagtagtcagtgcttccactgagccatc
tctccagtcctagaagttggttttcaagatagagtagttatctggtacca
tgcagctcctgaaatgtaagcaggagacgccggggaccataagggaaagg
ttcactctccagacaagggcagcacctcttggcctgttcgttctttctat
ctgcagagctccgaaaggccagaggtggagcatgttggctccatgaggtg
aaaatcacatctgcagatggattttcagaagaaaggcatccctgctccca
tcgctctgagaaccactgtcagagtcccggatgaatgcaagttggaccta
atgagagcaaataacccttgtttgaataatcaaatattgaccgtcccata
ttattggaagctaacttgtttaacacaccatgttaatacagatataacag
cataatctaacctattggtacatgacttgggaaaaatctaatacgaaccg
gtgagattgcagtaagcaagcacacactgaggcttctgtggtggtggagt
ttacaccacagaagatgagaagtcagatgattcctttcgaaagaagagac
atcgctg

gaattctttgtttagctccgaggcccatttttttttaatggggttatttg
attttctggagtccaccttcttgagttctttatatatgttggatattagt
cccctatctgatttaggataggtaaagatcctttcccaatctgttggtgg
cctttttgtcttattgatggtgtcttttgcctcgcagaagctttgcaatt
ttatgaggtcccatttgtcgattctcgatcttacagcacaagccattgct
gttcttttcaggaattttccccctgtacccatatcttcgaggcttttccc
tactttctcctctataagtttcagtgtctctggttttatgtggagttcct
taatccacttagatttgaccttagtacaaggagataggaatggatcaatt
cgtattcttctgcatgataaccgccagttgtgccagcagcatttgttgaa
aatgctgtcttttttctactggatggttttagctcccttgtcaaagatca
agtgaccataggtgtgtgggttcatttctgggtcttcaattctattccat
tggtctacttgtctgtcactataccagtaccatgcagttttttttgtttt
tttgttttttgttttttttttaatcacaattgctttgtagtacagcttta
ggtcaggcatggtgattctaccagaggttcttttatccttgagaagagtt
tttgctttcctaggtttttgttattccagatgaatttgcagattgccctt
tctaattcgttgaagagttgagttggaattttgatggggagtgcattgaa
tctgtagattgcttttggcaagacagccatttttagtatattgatcctgc
caatccatgagcatgggagatctttccatcttctgagatcttcttcaatt
tcttttcttcagagacttgaagttcttatcatacagatctttcacttcct
tagttagagtcacacaaagtatgctatattatttgtgactatgagaagga
gtgttgtttgcttaatttcatctcagctgtttatcctttgtgtacagaaa
ggcattgacttgttgagttaattttatatcagctactcacgaggctgttt
atcagctaaggagtctctggtggattttagtactatattacatctatcat
ctggcaaagtgatatatttgacttctctcttccgtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28941449_28942560
seq2: B6Ng01-280D15.b_50_1156 (reverse)

seq1  CAGCGAATGTCTTCTCTTTCCGAAGGAATCATCCCTGACTTCTCATCTTC  50
      ||||| ||||||  ||||||  ||||||||||  ||||||||||||||||
seq2  CAGCG-ATGTCTCTTCTTTCGAAAGGAATCAT--CTGACTTCTCATCTTC  47

seq1  TGTGGTGTAAACTC--ACACCACAGAAGCCTCAGTGTGTGCTTGCCTACT  98
      ||||||||||||||   |||||||||||||||||||||||||||| ||||
seq2  TGTGGTGTAAACTCCACCACCACAGAAGCCTCAGTGTGTGCTTGCTTACT  97

seq1  GCAATCTTCACCGGTTTCGTTATTAGATTTTTCCCAAGTCATTGTACCAA  148
      |||||| ||||||| |||| ||||||||||||||||||||| ||||||||
seq2  GCAATC-TCACCGG-TTCG-TATTAGATTTTTCCCAAGTCA-TGTACCAA  143

seq1  TAGGTTAGATTATGCTGTTATATCTGTATTAACATGGTGTGTTAAACAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGATTATGCTGTTATATCTGTATTAACATGGTGTGTTAAACAAG  193

seq1  TTAGCTTCCAATAATATGGGACGGTCAATATTTGATTATTCAAACAAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCCAATAATATGGGACGGTCAATATTTGATTATTCAAACAAGGG  243

seq1  TTATTTGCTCTCATTAGGTCCAACTTGCATTCATCCGGGACTCTGACAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCTCTCATTAGGTCCAACTTGCATTCATCCGGGACTCTGACAGT  293

seq1  GGTTCTCAGAGCGATGGGAGCAGGGATGCCTTTCTTCTGAAAATCCATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGAGCGATGGGAGCAGGGATGCCTTTCTTCTGAAAATCCATCT  343

seq1  GCAGATGTGATTTTCACCTCATGGAGCCAACATGCTCCACCTCTGGCCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTGATTTTCACCTCATGGAGCCAACATGCTCCACCTCTGGCCTT  393

seq1  TCGGAGCTCTGCAGATAGAAAGAACGAACAGGCCAAGAGGTGCTGCCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGCTCTGCAGATAGAAAGAACGAACAGGCCAAGAGGTGCTGCCCTT  443

seq1  GTCTGGAGAGTGAACCTTTCCCTTATGGTCCCCGGCGTCTCCTGCTTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGAGTGAACCTTTCCCTTATGGTCCCCGGCGTCTCCTGCTTACA  493

seq1  TTTCAGGAGCTGCATGGTACCAGATAACTACTCTATCTTGAAAACCAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGCTGCATGGTACCAGATAACTACTCTATCTTGAAAACCAACT  543

seq1  TCTAGGACTGGAGAGATGGCTCAGTGGAAGCACTGACTACTCTTCCTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACTGGAGAGATGGCTCAGTGGAAGCACTGACTACTCTTCCTAAA  593

seq1  GGTCCTGAGTTCAATTCCCACCATCCACGTGGTGGCTCACAACTATCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCACCATCCACGTGGTGGCTCACAACTATCTGT  643

seq1  TATGAGATCCGATAACCTCTTCTGGTGTGTCTGAAGACTCATATAAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATCCGATAACCTCTTCTGGTGTGTCTGAAGACTCATATAAATAA  693

seq1  TATAAATAAATAAATACTTAGAAAACCAACTTCTAGCTGGACTCTGAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATAAATACTTAGAAAACCAACTTCTAGCTGGACTCTGAATC  743

seq1  AGCATTCTGTTTACATGGGAAAATAGGCTAAATATTGGCAATTGGCAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGTTTACATGGGAAAATAGGCTAAATATTGGCAATTGGCAGGC  793

seq1  TCCACCTTACAATGACATTTTACACACTCTAGGTAGAGTCTAATATGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTACAATGACATTTTACACACTCTAGGTAGAGTCTAATATGATA  843

seq1  TGCATTTTAAAAGTTATTCAGTAGGCTGGCAAGATGCCTCCACAGGTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAAAAGTTATTCAGTAGGCTGGCAAGATGCCTCCACAGGTCAT  893

seq1  GGCACTTGCTGCCAAGTCTGACATTCTGAGTTTGATTCCCGGAAGCCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGCTGCCAAGTCTGACATTCTGAGTTTGATTCCCGGAAGCCATG  943

seq1  GTGGAAGGAGAAATGTGATTCCTGGACTTAATTCTCTGATCTCTGCATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGAGAAATGTGATTCCTGGACTTAATTCTCTGATCTCTGCATAC  993

seq1  ATTCCTTGGCATGCCTCTTGCCTATCTAAAATACATAAATTATTCGCTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGCATGCCTCTTGCCTATCTAAAATACATAAATTATTCGCTAT  1043

seq1  TTAACTGCCAATGGTATAAAATATCTTGTGGGGGATATAAACTGATGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCCAATGGTATAAAATATCTTGTGGGGGATATAAACTGATGGAA  1093

seq1  AATGGTTTGAATTC  1112
      ||||||||||||||
seq2  AATGGTTTGAATTC  1107


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