BAC Information

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BAC

Clone NameB6Ng01-286I17
Chromosome3 (Build37)
Map Location 144,891,313 - 145,018,467
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286I17.bB6Ng01-286I17.g
ACCGA084715GA084716
length1,144946
definitionB6Ng01-286I17.b B6Ng01-286I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,891,313 - 144,892,444)(145,017,520 - 145,018,467)
sequence
gaattctctattttccactctaattttctttaaaaccagtccgaaaaata
aaggtcattagttattctgagactgagtctcactatgtcacccaggccat
ccttgaggtcacatgctcatgtctccaagtccacactgctgggcttgcag
acttaccaaagccattcttcattaatagtttttaaagataatacaaaaga
catgaagatgagtgaaagctgtggagtctgctcgcctgagtaatagttcc
ataaagacacagaagaaggggggagggcaaatctgtgatgtttaaagcag
agatgctttcttctgtatcttttgggatgtctttatacttattattcctg
tagtacaattacaattttggcagttttagcctttgtgatgctctgtcttg
atttctactgtcatttttcatgaatctatattttaaggttaattataagc
ttatcagtaacttttttattataaaaatagctcaattcttgcaattgtat
ttgatactcaatacaatctcaagtctttatagcattcctccaggcaaaga
ttattaacatggcaatatgtgaatcctgtagtctctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttccttccttccttccttccttccttccttctttctttcttt
ctttctttctttctttctttctttctttctttctttcttttcttttcttg
aaatagattcttttctcatacaatatattcttgttatagttttcccttcc
tctccttctctcagttcctccccacctctcttcctctccagataaagcag
aatttctcaacattgatgaaaccaacattgtggtgaagataattcttgtg
ggtaattgatgattatcaatgtgtaggatggtagcaatgtatctccagaa
tttgtcttctgtctcctagaagtaaaactccctgagtgtaccttggttaa
acaaaggagaacctcctttccggttatttcccagtgatccaccccatgcc
ctctacctcttggccctttgaatggatgtgaagatcttaggttggtgcca
tggagaaatatgggatgttacctatacttcacctggaatgtact
gaattccacaccgtgaagcttttccagcataaatcccattacaggaaaat
ttaatgctcagctctttgtgcttaatgttgtatatgaaggcttttctata
atgacgtaccactgatgttcctaaagtttacaatctctttgtcatcacca
tcaccatcagcagcagcagcagcagcagcagcaacagcagcattatttgg
gtccatgcatgtgtttacataatatatgtgaaaagtggcagggcacacat
gccgtgatgcacttatggggggcagaggattagtgtgtgggattggcact
ctccctctgtctttatgtgggttccaggaatcgaacgtgggtcaccacac
ttgctgagcaaatgctgttccccactgaaccagccacgaggttcacactt
tgtaaacactacatgaacagcttatgctatttactattgccagtattcat
tttaaaattcacgttaaacaatcacccttggaaggagttacagagacaaa
gtttggagctgagacaaaaggatggtccatctagagactgccatatccag
ggatccatcccataattagcctccaaacgatgacaccatttgcatacact
agcaagcctttgttgcaaggacggtgatatagctgtcccttgtgagacta
ggccggggcctagcaaacacagaagtggatgctcacaatcaactattgga
tggatcacagggcccccaatggaggagctagagaaagtatccaaggagct
aaagagatctgcaaccctatcggtggaacaacattatgaactaaccagta
ccccagagctcttgactctagctgcatatgtatcaaaagatgacctagtc
ggccatcactggaagagaggcccattggttcagcaaactttatatgcccc
agtacagggaacgccagggccaaaaatgggaatgggtgggttaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144891313_144892444
seq2: B6Ng01-286I17.b_45_1188

seq1  GAATTCTCTATTTTCCACTCTAATTTTCTTTAAAACCAGTCCGAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTTCCACTCTAATTTTCTTTAAAACCAGTCCGAAAAATA  50

seq1  AAGGTCATTAGTTATTCTGAGACTGAGTCTCACTATGTCACCCAGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTAGTTATTCTGAGACTGAGTCTCACTATGTCACCCAGGCCAT  100

seq1  CCTTGAGGTCACATGCTCATGTCTCCAAGTCCACACTGCTGGGCTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGTCACATGCTCATGTCTCCAAGTCCACACTGCTGGGCTTGCAG  150

seq1  ACTTACCAAAGCCATTCTTCATTAATAGTTTTTAAAGATAATACAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAAAGCCATTCTTCATTAATAGTTTTTAAAGATAATACAAAAGA  200

seq1  CATGAAGATGAGTGAAAGCTGTGGAGTCTGCTCGCCTGAGTAATAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATGAGTGAAAGCTGTGGAGTCTGCTCGCCTGAGTAATAGTTCC  250

seq1  ATAAAGACACAGAAGAAGGGGGGAGGGCAAATCTGTGATGTTTAAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACACAGAAGAAGGGGGGAGGGCAAATCTGTGATGTTTAAAGCAG  300

seq1  AGATGCTTTCTTCTGTATCTTTTGGGATGTCTTTATACTTATTATTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTCTTCTGTATCTTTTGGGATGTCTTTATACTTATTATTCCTG  350

seq1  TAGTACAATTACAATTTTGGCAGTTTTAGCCTTTGTGATGCTCTGTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAATTACAATTTTGGCAGTTTTAGCCTTTGTGATGCTCTGTCTTG  400

seq1  ATTTCTACTGTCATTTTTCATGAATCTATATTTTAAGGTTAATTATAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTGTCATTTTTCATGAATCTATATTTTAAGGTTAATTATAAGC  450

seq1  TTATCAGTAACTTTTTTATTATAAAAATAGCTCAATTCTTGCAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTAACTTTTTTATTATAAAAATAGCTCAATTCTTGCAATTGTAT  500

seq1  TTGATACTCAATACAATCTCAAGTCTTTATAGCATTCCTCCAGGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTCAATACAATCTCAAGTCTTTATAGCATTCCTCCAGGCAAAGA  550

seq1  TTATTAACATGGCAATATGTGAATCCTGTAGTCTCTTTCTTTCTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACATGGCAATATGTGAATCCTGTAGTCTCTTTCTTTCTTTCTTT  600

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  650

seq1  TTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTT  700

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTTCTTG  750

seq1  AAATAGATTCTTTTCTCATACAATATATTCTTGTTATAGTTTTCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTCTTTTCTCATACAATATATTCTTGTTATAGTTTTCCCTTCC  800

seq1  TCTCCTTCTCTCAGTTCCTCCCCACCTCTCTTCCTCTCCAGATAAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTCTCAGTTCCTCCCCACCTCTCTTCCTCTCCAGATAAAGCAG  850

seq1  AATTTCTCAACATTGATGAAACCAACATTGTGGTGAAGATAATTCTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAACATTGATGAAACCAACATTGTGGTGAAGATAATTCTTGTG  900

seq1  GGTAATTGATGATTATCAATGTGTAGGATGGTTAGCAATGTATCTCCAGA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTAATTGATGATTATCAATGTGTAGGATGG-TAGCAATGTATCTCCAGA  949

seq1  ATTTGTCTTCTGTCTCCTAGAAGGTAAAACTCCCTGAGTGTACCTTGGTT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTGTCTTCTGTCTCCTAGAA-GTAAAACTCCCTGAGTGTACCTTGGTT  998

seq1  AAACAAA-GAGAACCT-CTTTCGGTTTATTTCCCAGTGATCTA-CCCATG  1047
      ||||||| |||||||| ||||| | |||||||||||||||| | ||||||
seq2  AAACAAAGGAGAACCTCCTTTCCGGTTATTTCCCAGTGATCCACCCCATG  1048

seq1  CCCTCTACTTCCTGG-CCTTTG-ATTGATGT--AGATCTTA-GTTTGTGC  1092
      |||||||| || ||| |||||| || |||||  |||||||| ||| ||||
seq2  CCCTCTACCTCTTGGCCCTTTGAATGGATGTGAAGATCTTAGGTTGGTGC  1098

seq1  CAT---GAGATATGGGTATGT--ACTATACTTCACCTG--ATGTACT  1132
      |||   || ||||||| ||||   ||||||||||||||  |||||||
seq2  CATGGAGAAATATGGG-ATGTTACCTATACTTCACCTGGAATGTACT  1144

seq1: chr3_145017520_145018467
seq2: B6Ng01-286I17.g_70_1015 (reverse)

seq1  CCCT-ACCCACCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTGTACTGG  49
      |||| ||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CCCTAACCCACCCATTCCCA-TTTTTGGCCCTGGCGTT-CCCTGTACTGG  48

seq1  GGCATATAAAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCCG  99
      ||||||||||||||||   ||||||||||||||| |||||||||||||||
seq2  GGCATATAAAGTTTGCTGAACCAATGGGCCTCTC-TTCCAGTGATGGCCG  97

seq1  ACTAGGTCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGT  147

seq1  ACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAGTTCATAATGTTGTTCCACCGATAGGGTTGCAGATCTCTTTA  197

seq1  GCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCAT  247

seq1  CCAATAGTTGATTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTTGATTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCCT  297

seq1  AGTCTCACAAGGGACAGCTATATCACCGTCCTTGCAACAAAGGCTTGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAAGGGACAGCTATATCACCGTCCTTGCAACAAAGGCTTGCTA  347

seq1  GTGTATGCAAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCAAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATCCC  397

seq1  TGGATATGGCAGTCTCTAGATGGACCATCCTTTTGTCTCAGCTCCAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGCAGTCTCTAGATGGACCATCCTTTTGTCTCAGCTCCAAACT  447

seq1  TTGTCTCTGTAACTCCTTCCAAGGGTGATTGTTTAACGTGAATTTTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGTAACTCCTTCCAAGGGTGATTGTTTAACGTGAATTTTAAAA  497

seq1  TGAATACTGGCAATAGTAAATAGCATAAGCTGTTCATGTAGTGTTTACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTGGCAATAGTAAATAGCATAAGCTGTTCATGTAGTGTTTACAA  547

seq1  AGTGTGAACCTCGTGGCTGGTTCAGTGGGGAACAGCATTTGCTCAGCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAACCTCGTGGCTGGTTCAGTGGGGAACAGCATTTGCTCAGCAAG  597

seq1  TGTGGTGACCCACGTTCGATTCCTGGAACCCACATAAAGACAGAGGGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGACCCACGTTCGATTCCTGGAACCCACATAAAGACAGAGGGAGA  647

seq1  GTGCCAATCCCACACACTAATCCTCTGCCCCCCATAAGTGCATCACGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATCCCACACACTAATCCTCTGCCCCCCATAAGTGCATCACGGCA  697

seq1  TGTGTGCCCTGCCACTTTTCACATATATTATGTAAACACATGCATGGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCTGCCACTTTTCACATATATTATGTAAACACATGCATGGACC  747

seq1  CAAATAATGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGATGGTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGATGGTGAT  797

seq1  GGTGATGACAAAGAGATTGTAAACTTTAGGAACATCAGTGGTACGTCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGACAAAGAGATTGTAAACTTTAGGAACATCAGTGGTACGTCATT  847

seq1  ATAGAAAAGCCTTCATATACAACATTAAGCACAAAGAGCTGAGCATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGCCTTCATATACAACATTAAGCACAAAGAGCTGAGCATTAAA  897

seq1  TTTTCCTGTAATGGGATTTATGCTGGAAAAGCTTCACGGTGTGGAATTC  948
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTAATGGGATTTATGCTGGAAAAGCTTCACGGTGTGGAATTC  946