BAC Information

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BAC

Clone NameB6Ng01-286J17
Chromosome3 (Build37)
Map Location 139,504,965 - 139,645,314
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286J17.bB6Ng01-286J17.g
ACCGA084759GA084760
length6371,180
definitionB6Ng01-286J17.b B6Ng01-286J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,504,965 - 139,505,598)(139,644,152 - 139,645,314)
sequence
gaattccatgatattttaatagtcaatacactgaagtggccaagaacacc
cagaatgttgcaatcacattccggatttaagtcttatcacactacaatct
ctgctatattaattacatgaactaatatcttacacaatagattttgacca
cagtttctaactgcccacttcttcatgctctccgctccacataaccccca
cctctcctctcccccagattcacttttactttctgcacactgtctgactg
tgagtctctgtatctgctcccatctgctgtgggaggaagcttctctgatg
actgtaccaggcatagacctatgagcagaatatcatcagggacgcttgct
tgccttccttccttccttccttccttccttccttacttacttccttcctt
ccttccttcctccctccctccctcccttcttcccttcattccccccctct
ctttcctttttctatgtttttacttcctttcttcctttcatatatagcca
gtcatgtttgattctaccatatgtctttaaggctatgcagtctcctgttt
catggccatctaggcagtgtacagaatgggctccctctcaaaccatgggc
atcaagtcaaacccaggcattatttgaccactcccac
gaattcttctccttatttcagcgtcacagctgctaattcatgaaaaactc
tacaaaacaaattaaagactcatgtgcacaaacactgcgtctttggttta
aaccaagattaactgaaatttgaaaaagaagacatgaaatcagttcagtt
ggacttgagcaaagctttttttttttttctttactttacccaaggccaac
taaacattggtattaagactggaaacaaaaactgtgtttttgttccccaa
attccactcacttctttactatttaatttcaacttttaaaaatcatattc
taaaatgtgattcagatttatattttccttctgtatatttaatcatatga
ctccttaggataaaattttctgaaaaagtttatattgtgctttatattta
aggtataatttgcaaagtaatttatacctgtttatcctggctttctcgcc
gtacctgtctgcttcttatcacaatgactatggacgaatcctctgaaatg
gcaagcaaacatttgattacatggtgttctttgatgagatttgccttcat
tatggtatctcttcactgtaagacaagagtaactaggacagtcttgtcct
gtccctctcacccctcctcctcttctccctcttcctccatcactattatc
tcccctttctctttcatttttgctcagtaaatcaaaaactggtaaattcc
ccatcttcctaattttcctgaaatacaatgaaatattgttgaaatcttat
agaatttaactgccatgtttcttctaacacacacacacacacacacacac
acacacacacgcgcgcgcgcgcgcctaataaaaccagcatttctctaagg
ttctaaacaggcttgaaaacttcttcacatagcttagaatctaaccacac
aattaatgaggaataatgaacactatatttgataccacttcttcagaagt
ggttttaagctaggtgctatttaaaaccatttttctaaatttctataact
aagtataatttgtaacttttatttctaaatacatacttctttaataccta
acagcttggtgaagatcttaccctttatcaaagaatgccttctttgtggt
tagccagatgactattacagaattttcacacacctctattcccaaacaca
agagaaacaatgctctgggagtttagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139504965_139505598
seq2: B6Ng01-286J17.b_46_682

seq1  GAATTCCATGATATTTTAATAGTCAATACACTGAAGTGGCCAAGAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATATTTTAATAGTCAATACACTGAAGTGGCCAAGAACACC  50

seq1  CAGAATGTTGCAATCACATTCCGGATTTAAGTCTTATCACACTACAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTGCAATCACATTCCGGATTTAAGTCTTATCACACTACAATCT  100

seq1  CTGCTATATTAATTACATGAACTAATATCTTACACAATAGATTTTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATTAATTACATGAACTAATATCTTACACAATAGATTTTGACCA  150

seq1  CAGTTTCTAACTGCCCACTTCTTCATGCTCTCCGCTCCACATAACCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAACTGCCCACTTCTTCATGCTCTCCGCTCCACATAACCCCCA  200

seq1  CCTCTCCTCTCCCCCAGATTCACTTTTACTTTCTGCACACTGTCTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTCCCCCAGATTCACTTTTACTTTCTGCACACTGTCTGACTG  250

seq1  TGAGTCTCTGTATCTGCTCCCATCTGCTGTGGGAGGAAGCTTCTCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCTGTATCTGCTCCCATCTGCTGTGGGAGGAAGCTTCTCTGATG  300

seq1  ACTGTACCAGGCATAGACCTATGAGCAGAATATCATCAGGGACGCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCAGGCATAGACCTATGAGCAGAATATCATCAGGGACGCTTGCT  350

seq1  TGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  400
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  TGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTACTTCCTTCCTT  400

seq1  CCTTCCTTCCTCCCTCCCTCCCTCCCTTCTTCCCTTCATTCCCCCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTCCCTCCCTCCCTCCCTTCTTCCCTTCATTCCCCCCCTCT  450

seq1  CTTTCCTTTTTCTTTGTTTTTACTTCCTTTCTTCCTTTCATATATAGCCA  500
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTCTATGTTTTTACTTCCTTTCTTCCTTTCATATATAGCCA  500

seq1  GTCATGTTTGATTCTACCATATGTCTTTAA-GCTATGCAGTCTCCTG-TT  548
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  GTCATGTTTGATTCTACCATATGTCTTTAAGGCTATGCAGTCTCCTGTTT  550

seq1  CATGGCCATCTAGGCAGTGTACAGAATGGGCTCCCTCTCAAACCATGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCATCTAGGCAGTGTACAGAATGGGCTCCCTCTCAAACCATGGGC  600

seq1  ATCAAGTCAAA-CCAGGCATTAGTTGACCACTCCCAC  634
      ||||||||||| |||||||||| ||||||||||||||
seq2  ATCAAGTCAAACCCAGGCATTATTTGACCACTCCCAC  637

seq1: chr3_139644152_139645314
seq2: B6Ng01-286J17.g_67_1246 (reverse)

seq1  AATGCTATAAACACCCCAGAGCCATTTGTTCTC-TGTGTTTGG--AT-GA  46
      |||||  |||||  ||||||| ||||  ||||| |||||||||  || ||
seq2  AATGC--TAAAC-TCCCAGAG-CATTGTTTCTCTTGTGTTTGGGAATAGA  46

seq1  GTTGTG---AAAATCTGTAATAGTCCTATCT-GCTA--CACAAAGAA-GC  89
      | ||||   ||| ||||||||||||  |||| ||||  ||||||||| ||
seq2  GGTGTGTGAAAATTCTGTAATAGTC--ATCTGGCTAACCACAAAGAAGGC  94

seq1  A-TCTTTGATAAAGGGTAAGATCTTCACCAAGCTG-TAGGTAT--AAG-A  134
      | ||||||||||||||||||||||||||||||||| |||||||  ||| |
seq2  ATTCTTTGATAAAGGGTAAGATCTTCACCAAGCTGTTAGGTATTAAAGAA  144

seq1  GTATGTATTTAGAA--TAAAGTTACAAATTATACTTAGTTATAG-AATTT  181
      ||||||||||||||   ||||||||||||||||||||||||||| |||||
seq2  GTATGTATTTAGAAATAAAAGTTACAAATTATACTTAGTTATAGAAATTT  194

seq1  AGAAAAATGGTTTTAAATAGCACCTAGCTTAAAACCAC-TCTGAAG-AGT  229
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AGAAAAATGGTTTTAAATAGCACCTAGCTTAAAACCACTTCTGAAGAAGT  244

seq1  -GTATCAAATATAGTGTTCATTATTCCTCATTAATTGTGT-GTTAGATTC  277
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTATCAAATATAGTGTTCATTATTCCTCATTAATTGTGTGGTTAGATTC  294

seq1  TAAGCTATGTGAAGAAGTTTTCAAGCCTGTTTAGAACCTTAGAGAAATGC  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTATGTGAAGAAGTTTTCAAGCCTGTTTAGAACCTTAGAGAAATGC  344

seq1  TGGTTTTATTAGGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTAGGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGT  394

seq1  GTGTGTGTGTTAGAAGAAACATGGCAGTTAAATTCTATAAGATTTCAACA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTAGAAGAAACATGGCAGTTAAATTCTATAAGATTTCAACA  444

seq1  ATATTTCATTGTATTTCAGGAAAATTAGGAAGATGGGGAATTTACCAGTT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTGTATTTCAGGAAAATTAGGAAGATGGGGAATTTACCAGTT  494

seq1  TTTGATTTACTGAGCAAAAATGAAAGAGAAAGGGGAGATAATAGTGATGG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTACTGAGCAAAAATGAAAGAGAAAGGGGAGATAATAGTGATGG  544

seq1  AGGAAGAGGGAGAAGAGGAGGAGGGGTGAGAGGGACAGGACAAGACTGTC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGAGAAGAGGAGGAGGGGTGAGAGGGACAGGACAAGACTGTC  594

seq1  CTAGTTACTCTTGTCTTACAGTGAAGAGATACCATAATGAAGGCAAATCT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACTCTTGTCTTACAGTGAAGAGATACCATAATGAAGGCAAATCT  644

seq1  CATCAAAGAACACCATGTAATCAAATGTTTGCTTGCCATTTCAGAGGATT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGAACACCATGTAATCAAATGTTTGCTTGCCATTTCAGAGGATT  694

seq1  CGTCCATAGTCATTGTGATAAGAAGCAGACAGGTACGGCGAGAAAGCCAG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATAGTCATTGTGATAAGAAGCAGACAGGTACGGCGAGAAAGCCAG  744

seq1  GATAAACAGGTATAAATTACTTTGCAAATTATACCTTAAATATAAAGCAC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAGGTATAAATTACTTTGCAAATTATACCTTAAATATAAAGCAC  794

seq1  AATATAAACTTTTTCAGAAAATTTTATCCTAAGGAGTCATATGATTAAAT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAACTTTTTCAGAAAATTTTATCCTAAGGAGTCATATGATTAAAT  844

seq1  ATACAGAAGGAAAATATAAATCTGAATCACATTTTAGAATATGATTTTTA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGGAAAATATAAATCTGAATCACATTTTAGAATATGATTTTTA  894

seq1  AAAGTTGAAATTAAATAGTAAAGAAGTGAGTGGAATTTGGGGAACAAAAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAATTAAATAGTAAAGAAGTGAGTGGAATTTGGGGAACAAAAA  944

seq1  CACAGTTTTTGTTTCCAGTCTTAATACCAATGTTTAGTTGGCCTTGGGTA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTTGTTTCCAGTCTTAATACCAATGTTTAGTTGGCCTTGGGTA  994

seq1  AAGTAAAGAAAAAAAAAAAAAGCTTTGCTCAAGTCCAACTGAACTGATTT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGAAAAAAAAAAAAAGCTTTGCTCAAGTCCAACTGAACTGATTT  1044

seq1  CATGTCTTCTTTTTCAAATTTCAGTTAATCTTGGTTTAAACCAAAGACGC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTCTTTTTCAAATTTCAGTTAATCTTGGTTTAAACCAAAGACGC  1094

seq1  AGTGTTTGTGCACATGAGTCTTTAATTTGTTTTGTAGAGTTTTTCATGAA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTGCACATGAGTCTTTAATTTGTTTTGTAGAGTTTTTCATGAA  1144

seq1  TTAGCAGCTGTGACGCTGAAATAAGGAGAAGAATTC  1163
      ||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCTGTGACGCTGAAATAAGGAGAAGAATTC  1180