BAC Information

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BAC

Clone NameB6Ng01-290E03
Chromosome3 (Build37)
Map Location 141,222,931 - 141,224,018
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290E03.bB6Ng01-290E03.g
ACCGA087442GA087443
length1,0991,183
definitionB6Ng01-290E03.b B6Ng01-290E03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaagaaaatttttttctgctcattttgcttgtcctgtgggtaa
cacatcacattgtgtgtcctatgtgccagtggctgcagtttgctgcacgg
tgccattaacatacatctgggccaccctttgtgtggagctgtcccccggt
gaaactttagtggtctgggacagagaaagactgcaatttgcagagtccat
tatcacctctggatgtgtagaatgataatggaagtgacagaggtgccgct
gaaaattggctcttaatatttcatgtgttcaagcaaaggattggaaatct
catgctgctctttagggaaaatgaagcatgtggaaggctttttatttatt
tattttacaactggaaagttataggcaaagggttgactgcggggtttcag
agaaagtgccacagcatattcactttgtactaattaatacgtctcagtaa
caagttagatgaaaaatgtctgtgtgaaaatcagtatgtacaaaaaagcc
ataaacagaaccaaaggaaagctttagactcaaagcttttaaagcaatgt
gccatatctacaatcactttacaaatgtgtttcattgatggaaccacaaa
cacgctaaaagattatcttacaaaattttggttgtttctctttttagtat
tttttcactcaatatgttctttaatggcttgtaacttaaaatgttgttgc
aaaagttatcaatgttacaatacatttagaaacagaaattccttcaggtt
attaagtattgaatgcttatggaatatggtagaaaattaattcagcttct
gaaatactaaaattaaacattaaacacttatcatgacatgttacaattct
tacaattgcactgagttatgtttgtcaaaagaacttgcccttgaaagcta
taggggttgttttctttgtcaaagctgatgctgttttatgtcttcttact
ttttcatcaaccgttatcttagacaaacaaagtaggattcttttctttaa
ttaaatagatgaatgtatatggtttgaagtttgggtaaaatatttaagaa
tttgtctgtattttccaattaaatataaattacccaacaaaaggtgtct
gaattctcactgaggaatatcaaatggctgagaagcacgtgaaaaaatgt
tcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagact
ccacctcacaccagtcagaatggctaagatcaaacatttaggtgacaaca
gatgctggcgaggatgtggggaaagaggaacactcctccattgttggtgg
gattgaaaccttctactaccactctggaaatcagtctgatgggtcctcag
aaaaattggacatagtactaccagaggatcccacaatacctctcctgggc
ataatatccagaagatattccaactggtaagacggacacatgctccacta
tgttcacagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctccacaat
ggagtactactaagctattagaaagaatgaatttatgaaattcctaggca
aatggatgggcctggaaggcatcatcctgagtgaggtaactcaagcacaa
aagaattctcatgatatgtactcactgataagtggatattagcccagaaa
cttagaatacccaagatataagatatatttgcgaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttgctccttcttagaattggga
acaaaacacccatagaaggagttacagagacaaagtttggagctgagacg
aaagatgggacatctagaaactgccatatccagggttccatcccataatc
agcctccaaatgctgacaccattgcatacactagcaagattttcctgaaa
ggatcctgatatagctgtctcttgttagactacaccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacgggttccccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccc
tataggtggaacaacatatgaactaacagtaccccctcagtgctcgtgtc
ctctagctgcatatgtatcagaagaatggccctagtctgtcatcagttga
aagagaagacccaattggatcgtgcaacctttatttgccctcagtacaag
agtcctagaaactgggaaaatgtgggtttagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141222931_141224018
seq2: B6Ng01-290E03.b_47_1145

seq1  GAATTCCTAAGAAAATTTTTTTCTGCTCATTTTGCTTGTCCTGTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGAAAATTTTTTTCTGCTCATTTTGCTTGTCCTGTGGGTAA  50

seq1  CACATCACATTGTGTGTCCTATGTGCCAGTGGCTGCAGTTTGCTGCACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACATTGTGTGTCCTATGTGCCAGTGGCTGCAGTTTGCTGCACGG  100

seq1  TGCCATTAACATACATCTGGGCCACCCTTTGTGTGGAGCTGTCCCCCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAACATACATCTGGGCCACCCTTTGTGTGGAGCTGTCCCCCGGT  150

seq1  GAAACTTTAGTGGTCTGGGACAGAGAAAGACTGCAATTTGCAGAGTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTAGTGGTCTGGGACAGAGAAAGACTGCAATTTGCAGAGTCCAT  200

seq1  TATCACCTCTGGATGTGTAGAATGATAATGGAAGTGACAGAGGTGCCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTCTGGATGTGTAGAATGATAATGGAAGTGACAGAGGTGCCGCT  250

seq1  GAAAATTGGCTCTTAATATTTCATGTGTTCAAGCAAAGGATTGGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGCTCTTAATATTTCATGTGTTCAAGCAAAGGATTGGAAATCT  300

seq1  CATGCTGCTCTTTAGGGAAAATGAAGCATGTGGAAGGCTTTTTATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTCTTTAGGGAAAATGAAGCATGTGGAAGGCTTTTTATTTATT  350

seq1  TATTTTACAACTGGAAAGTTATAGGCAAAGGGTTGACTGCGGGGTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACAACTGGAAAGTTATAGGCAAAGGGTTGACTGCGGGGTTTCAG  400

seq1  AGAAAGTGCCACAGCATATTCACTTTGTACTAATTAATACGTCTCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCCACAGCATATTCACTTTGTACTAATTAATACGTCTCAGTAA  450

seq1  CAAGTTAGATGAAAAATGTCTGTGTGAAAATCAGTATGTACAAAAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGATGAAAAATGTCTGTGTGAAAATCAGTATGTACAAAAAAGCC  500

seq1  ATAAACAGAACCAAAGGAAAGCTTTAGACTCAAAGCTTTTAAAGCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGAACCAAAGGAAAGCTTTAGACTCAAAGCTTTTAAAGCAATGT  550

seq1  GCCATATCTACAATCACTTTACAAATGTGTTTCATTGATGGAACCACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATCTACAATCACTTTACAAATGTGTTTCATTGATGGAACCACAAA  600

seq1  CACGCTAAAAGATTATCTTACAAAATTTTGGTTGTTTCTCTTTTTAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTAAAAGATTATCTTACAAAATTTTGGTTGTTTCTCTTTTTAGTAT  650

seq1  TTTTTCACTCAATATGTTCTTTAATGGCTTGTAACTTAAAATGTTGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTCAATATGTTCTTTAATGGCTTGTAACTTAAAATGTTGTTGC  700

seq1  AAAAGTTATCAATGTTACAATACATTTAGAAACAGAAATTCCTTCAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATCAATGTTACAATACATTTAGAAACAGAAATTCCTTCAGGTT  750

seq1  ATTAAGTATTGAATGCTTATGGAATATGGTAGAAAATTAATTCAGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATTGAATGCTTATGGAATATGGTAGAAAATTAATTCAGCTTCT  800

seq1  GAAATACTAAAATTAAACATTAAACACTTATCATGACATGTTACAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTAAAATTAAACATTAAACACTTATCATGACATGTTACAATTCT  850

seq1  TACAATTGCACTGAGTTATGTTTGTCAAAAGAACTTGCCCTTGAAAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGCACTGAGTTATGTTTGTCAAAAGAACTTGCCCTTGAAAGCTA  900

seq1  TAGGGGTTGTTTTCTTTGTCAAAGCTGATGCTGTTTTTATGTCTTCTTAC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGGGGTTGTTTTCTTTGTCAAAGCTGATGCTG-TTTTATGTCTTCTTAC  949

seq1  -TTTTCATCAACCGTTATCTTAGACAAACAAAGTAGGATTCTTT--CTTA  997
       |||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TTTTTCATCAACCGTTATCTTAGACAAACAAAGTAGGATTCTTTTCTTTA  999

seq1  ATAAAATAGATGAATGTATATGGTTTGAAGTTTGG--TAAATATTTAAG-  1044
      || ||||||||||||||||||||||||||||||||   ||||||||||| 
seq2  ATTAAATAGATGAATGTATATGGTTTGAAGTTTGGGTAAAATATTTAAGA  1049

seq1  ATTTGTCTGTA-TTTCCA---TAATATAAATTTACCA--CAAAGGTGTCT  1088
      ||||||||||| ||||||    ||||||||||  |||   ||||||||||
seq2  ATTTGTCTGTATTTTCCAATTAAATATAAATTACCCAACAAAAGGTGTCT  1099