BAC Information

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BAC

Clone NameB6Ng01-293F17
Chromosome3 (Build37)
Map Location 71,980,313 - 71,981,413
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293F17.bB6Ng01-293F17.g
ACCGA089760GA089761
length1,2121,098
definitionB6Ng01-293F17.b B6Ng01-293F17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaactgaggaatactgaatggccatgaagcacctaaagaaatg
ttcaacatccttagtcatgtgggaagtgtaaatcaaaacaaccctgagat
tccacttaccaccactatgaatggctaagatcaaaacttaggtgacagga
gatgctggaaagaagaaagttcctccattgttggtggaattgcaagctgg
tacaactactctggaaatgagtctggtggttcctcagaaaattttacata
gtacttcctgagaacccatctatacctctccttggcatatacccaaaaga
ttctccaacataaagcaaggacacatgctctactatgttcatggcagcct
tacttataatattcataagctagaagcaacccagatgtccttcaacaaag
gaatggatacaaaaaaaatgtggtacatttggacaaaggagtactactca
gcaattgaaaacaattattttatgaaattcttaggcaaatgaatggaatt
agaaaatatccttagcgaggaaactcatccacaaaagaacacacatggta
cgcactcactgataagtaaatattagccacaaagctggaaatacccaaga
tataattcatagatcacatgaagctcaagaagaaggaataccaaagtttg
gatggtcattcattctgagaagagagaacaaaatacttaaggaaggcaat
atgtagacaaagtgtttagcagagactgaaggaaagaccttccaaagaag
gccctacctgggtatccatttcataaacacacacaaaacccacacactat
tgtggatgccatgaagtgcttgctgacaggagcctgatttagctgtctcc
tgagaagctctgtcagaacctcacaaatatagaggtggatgcttgcagcc
aactattggactgagcacagggtccccaatggaggagatagggaaaagac
tgaaagagttgaagagtttgcaatccataggaagaaacaacaatatcaac
cagagctctccagatctcccaggaactaaccacaaccaaagagtacacat
ggagggaccatgctccagtcacatatttagcagatgatgacttgttgaca
tccaatggaaggagaaggccctgatcctgtgaaggctccatgctccatgt
aagggcatgcagtgtcaggtagtcagatggtggtatagtggaagtggggc
tacatcaccttc

gaattctctttcttgctttgtttcttttcaatgtttccttcacataagtc
tgccctcaattaaccctgccttcagtcttgtggtttacattgttatagtt
tctgtttaacttgttcatgacagtggccagaagcaaagatagagctgttc
tctatggatttctaacaggagattgataagtttgagtatgtacctggtga
gacctgattggagaataaattgagataaagccatattgtgtaaaatggaa
agaacttaaactctaaggacccagaagacttaaaagtgtcaaatggagga
cagtgggaaatggtgcatcaggtaagtggagggagcccaatgactaaata
aagagaataagtggtaaaaagtagtactaaaaaaaattagttgaataaga
agcctatttctccatggcattggatccgagcaatagaacaattgtatgta
tctgaaagttgggttgagtaacactggagagtttcattagagggctctgt
cattattttatatcctcaagaaaaacaatgggcagaacacatctgttctc
aaagatttaagaaggctaatggagaaaatggcaacctagaagatatactc
tgttctccctccagagttgtacacaggaagtttagagaaaccccccattt
gataataagaagttatgttcatgactgattttcccctgcttggaggttca
cattggccacatctgtgaaaactgttcaataatcggtttctacagtgagt
agggttggctatataacaaattcatagggcttaaagagtgaagccaaggg
gttatgtctatgatttaaaaatgtgttttggccctagtcatgaaacccag
cagagaaactatatgaagcaaattaatgacacacatgtgtgtacagacat
acatgtaaacaactcagtcgacattcgtggagtttccaggagattaatag
tgaaatatattttctagaataattttctctttgattatgtaacaacgtca
ataattgtattcttgtgtatttgcacaggttttctgatagaagtacatac
tctatccaattagttagatatctaggttggctttagtcacaactcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71980313_71981413
seq2: B6Ng01-293F17.g_66_1163

seq1  GAATTCTCTTTCTTGCTTTGTTTCTTTTCAATGTTTCCTTCACATAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTGCTTTGTTTCTTTTCAATGTTTCCTTCACATAAGTC  50

seq1  TGCCCTCAATTAACCCTGCCTTCAGTCTTGTGGTTTACATTGTTATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAATTAACCCTGCCTTCAGTCTTGTGGTTTACATTGTTATAGTT  100

seq1  TCTGTTTAACTTGTTCATGACAGTGGCCAGAAGCAAAGATAGAGCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAACTTGTTCATGACAGTGGCCAGAAGCAAAGATAGAGCTGTTC  150

seq1  TCTATGGATTTCTAACAGGAGATTGATAAGTTTGAGTATGTACCTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGATTTCTAACAGGAGATTGATAAGTTTGAGTATGTACCTGGTGA  200

seq1  GACCTGATTGGAGAATAAATTGAGATAAAGCCATATTGTGTAAAATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATTGGAGAATAAATTGAGATAAAGCCATATTGTGTAAAATGGAA  250

seq1  AGAACTTAAACTCTAAGGACCCAGAAGACTTAAAAGTGTCAAATGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAAACTCTAAGGACCCAGAAGACTTAAAAGTGTCAAATGGAGGA  300

seq1  CAGTGGGAAATGGTGCATCAGGTAAGTGGAGGGAGCCCAATGACTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAATGGTGCATCAGGTAAGTGGAGGGAGCCCAATGACTAAATA  350

seq1  AAGAGAATAAGTGGTAAAAAGTAGTACTAAAAAAAATTAGTTGAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAGTGGTAAAAAGTAGTACTAAAAAAAATTAGTTGAATAAGA  400

seq1  AGCCTATTTCTCCATGGCATTGGATCCGAGCAATAGAACAATTGTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTTCTCCATGGCATTGGATCCGAGCAATAGAACAATTGTATGTA  450

seq1  TCTGAAAGTTGGGTTGAGTAACACTGGAGAGTTTCATTAGAGGGCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGTTGGGTTGAGTAACACTGGAGAGTTTCATTAGAGGGCTCTGT  500

seq1  CATTATTTTATATCCTCAAGAAAAACAATGGGCAGAACACATCTGTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTATATCCTCAAGAAAAACAATGGGCAGAACACATCTGTTCTC  550

seq1  AAAGATTTAAGAAGGCTAATGGAGAAAATGGCAACCTAGAAGATATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTAAGAAGGCTAATGGAGAAAATGGCAACCTAGAAGATATACTC  600

seq1  TGTTCTCCCTCCAGAGTTGTACACAGGAAGTTTAGAGAAACCCCCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCCTCCAGAGTTGTACACAGGAAGTTTAGAGAAACCCCCCATTT  650

seq1  GATAATAAGAAGTTATGTTCATGACTGATTTTCCCCTGCTTGGAGGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAAGAAGTTATGTTCATGACTGATTTTCCCCTGCTTGGAGGTTCA  700

seq1  CATTGGCCACATCTGTGAAAACTGTTCAATAATCGGTTTCTACAGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCACATCTGTGAAAACTGTTCAATAATCGGTTTCTACAGTGAGT  750

seq1  AGGGTTGGCTATATAACAAATTCATAGGGCTTAAAGAGTGAAGCCAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGCTATATAACAAATTCATAGGGCTTAAAGAGTGAAGCCAAGGG  800

seq1  GTTATGTCTATGATTTAAAAATGTGTTTTGGCCCTAGTCATGAAACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTCTATGATTTAAAAATGTGTTTTGGCCCTAGTCATGAAACCCAG  850

seq1  CAGAGAAACTATATGAAGCAAATTAATGACACACATGTGTGTACAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACTATATGAAGCAAATTAATGACACACATGTGTGTACAGACAT  900

seq1  ACATGTAAACAAACTCAGTCGACATTCGTGGAGTTTCCAGGAGATTAATA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAAC-AACTCAGTCGACATTCGTGGAGTTTCCAGGAGATTAATA  949

seq1  GTGAAATATATTTTCTAG-ATAATTTTCTCTTTTGATTATGTAACAACGT  999
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GTGAAATATATTTTCTAGAATAATTTTCTC-TTTGATTATGTAACAACGT  998

seq1  CAAT-ATTGTATTCCTTTGTGTATTTGCACAGG-TTTCTGATAGAAAGTA  1047
      |||| |||||||||  ||||||||||||||||| |||||||||| |||||
seq2  CAATAATTGTATTC--TTGTGTATTTGCACAGGTTTTCTGATAG-AAGTA  1045

seq1  CATAACTCTAT-CAAATAG-TAGATATCTAGTTTGCTTTTAGTCACCAAC  1095
      ||| ||||||| ||| ||| ||||||||||| |||  |||||||| ||||
seq2  CAT-ACTCTATCCAATTAGTTAGATATCTAGGTTGGCTTTAGTCA-CAAC  1093

seq1  TTCATT  1101
       |||||
seq2  -TCATT  1098


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