BAC Information

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BAC

Clone NameB6Ng01-296B24
Chromosome3 (Build37)
Map Location 33,956,917 - 33,957,922
singlet/doubletsinglet
Overlap geneFxr1h, Dnajc19
Upstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072
Downstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296B24.bB6Ng01-296B24.g
ACCGA091814GA091815
length1,005957
definitionB6Ng01-296B24.b B6Ng01-296B24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctctactttctgtaaatgcttcctactttggcctaggttcat
aagtattttctcaaaacaagatgaacacagggagaagagaagaaaagaac
agaaaaagcaaatgaagagggatgggcaggagatcaggtcacagctaata
tccaagtccaaatggagaaagatggaacaactccaaagctaaacaagaat
aaatgagaatttatgattagagaattgttaactaccataggatccactga
tctgttcctaccctaggccccagcttccaaatgaaaatatagcttataaa
atgttcatgacaggttaactatatctctaagccttcatcttgaagaaatg
ttactaaacagttacatacaaggtactaaaacactcaaaccagcaacatc
agcaaagctgctgaaggtttattatatgcaacactgatctagtgatcagt
ctattacttttcatttgtgctcatcttatagatagcagtagcacactagg
agtctacagaaaatgtatgaaaccacattagttggaacataagccatatt
cccatttactctttacacatacttgtaacctaccgtaaccataattaaaa
attatgcattaggtaactatttgcaagctatacacctttcactgtcacta
gtttgtcacatcaatgggacatacaccttagaactacctttcagccaaaa
tgtatgcagcatctaaactagaaccactcccacacacactatacagaaat
aaatcaatgttctttttaccataaccggaggtgtaattagggccccgacg
acctctgcctcttccactataagacctagaaccttgtacagaagagacgg
tactttcatcagtggcatatcctttctctctttcagccctctggtggaag
aaggtctgaaacccataccaatctgtcgcagctgctcatcaatctgcaga
cgttccattcttagttgttccacttcctacgatcaaaacaaaaacccttt
tactg
gaattctcatattggttccctaaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatttggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagacgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgacgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaagggaccatctacctcagtgaa
attcttaggagtccagtggtgtgggagcatgcagagatattccttctaag
gtgaaagataagttattgcacctggcccctcctacaacccagaaagaagc
acaacgtttagtgggcctatttggattctgggagacaacacatccctcac
ttgggtgtgttacttagcctatttaccaagtgactcggaaagctgctagc
tttgtgtgggcctgaacagagaaggccctttcaacaggtccaggctgcct
gtgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33956917_33957922
seq2: B6Ng01-296B24.b_43_1047 (reverse)

seq1  CAGTAAAAGGGTTTTTGTTTTGATCGTAGGAAGTGGAACAACTAAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAGGGTTTTTGTTTTGATCGTAGGAAGTGGAACAACTAAGAATG  50

seq1  GAACGTCTGCAGATTGATGAGCAGCTGCGACAGATTGGTATGGGTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTCTGCAGATTGATGAGCAGCTGCGACAGATTGGTATGGGTTTCAG  100

seq1  ACCTTCTTCCACCAGAGGGCCTGAAAGAGAGAAAGGATATGCCACTGATG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCTTCTTCCACCAGAGGG-CTGAAAGAGAGAAAGGATATGCCACTGATG  149

seq1  AAAGTACCGTCTCTTCTGTACAAGGTTCTAGGTCTTATAGTGGAAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCGTCTCTTCTGTACAAGGTTCTAGGTCTTATAGTGGAAGAGGC  199

seq1  AGAGGTCGTCGGGGCCCTAATTACACCTCCGGTTATGGTAAAAAGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCGTCGGGGCCCTAATTACACCTCCGGTTATGGTAAAAAGAACAT  249

seq1  TGATTTATTTCTGTATAGTGTGTGTGGGAGTGGTTCTAGTTTAGATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTCTGTATAGTGTGTGTGGGAGTGGTTCTAGTTTAGATGCTG  299

seq1  CATACATTTTGGCTGAAAGGTAGTTCTAAGGTGTATGTCCCATTGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTTGGCTGAAAGGTAGTTCTAAGGTGTATGTCCCATTGATGTG  349

seq1  ACAAACTAGTGACAGTGAAAGGTGTATAGCTTGCAAATAGTTACCTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAGTGACAGTGAAAGGTGTATAGCTTGCAAATAGTTACCTAATG  399

seq1  CATAATTTTTAATTATGGTTACGGTAGGTTACAAGTATGTGTAAAGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTTAATTATGGTTACGGTAGGTTACAAGTATGTGTAAAGAGTA  449

seq1  AATGGGAATATGGCTTATGTTCCAACTAATGTGGTTTCATACATTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAATATGGCTTATGTTCCAACTAATGTGGTTTCATACATTTTCTG  499

seq1  TAGACTCCTAGTGTGCTACTGCTATCTATAAGATGAGCACAAATGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCTAGTGTGCTACTGCTATCTATAAGATGAGCACAAATGAAAAG  549

seq1  TAATAGACTGATCACTAGATCAGTGTTGCATATAATAAACCTTCAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACTGATCACTAGATCAGTGTTGCATATAATAAACCTTCAGCAGC  599

seq1  TTTGCTGATGTTGCTGGTTTGAGTGTTTTAGTACCTTGTATGTAACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATGTTGCTGGTTTGAGTGTTTTAGTACCTTGTATGTAACTGTT  649

seq1  TAGTAACATTTCTTCAAGATGAAGGCTTAGAGATATAGTTAACCTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATTTCTTCAAGATGAAGGCTTAGAGATATAGTTAACCTGTCAT  699

seq1  GAACATTTTATAAGCTATATTTTCATTTGGAAGCTGGGGCCTAGGGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTATAAGCTATATTTTCATTTGGAAGCTGGGGCCTAGGGTAGG  749

seq1  AACAGATCAGTGGATCCTATGGTAGTTAACAATTCTCTAATCATAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAGTGGATCCTATGGTAGTTAACAATTCTCTAATCATAAATTC  799

seq1  TCATTTATTCTTGTTTAGCTTTGGAGTTGTTCCATCTTTCTCCATTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTCTTGTTTAGCTTTGGAGTTGTTCCATCTTTCTCCATTTGGA  849

seq1  CTTGGATATTAGCTGTGACCTGATCTCCTGCCCATCCCTCTTCATTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATATTAGCTGTGACCTGATCTCCTGCCCATCCCTCTTCATTTGCT  899

seq1  TTTTCTGTTCTTTTCTTCTCTTCTCCCTGTGTTCATCTTGTTTTGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTCTTTTCTTCTCTTCTCCCTGTGTTCATCTTGTTTTGAGAAA  949

seq1  ATACTTATGAACCTAGGCCAAAGTAGGAAGCATTTACAGAAAGTAGAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATGAACCTAGGCCAAAGTAGGAAGCATTTACAGAAAGTAGAGGT  999

seq1  GAATTC  1006
      ||||||
seq2  GAATTC  1005