BAC Information

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BAC

Clone NameB6Ng01-298H11
Chromosome3 (Build37)
Map Location 77,293,250 - 77,431,544
singlet/doubletdoublet
Overlap geneDnmt3a-ps1
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298H11.bB6Ng01-298H11.g
ACCGA093564GA093565
length1,1781,014
definitionB6Ng01-298H11.b B6Ng01-298H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,293,250 - 77,294,431)(77,430,532 - 77,431,544)
sequence
gaattccatgaatgaaactgcactgagtgcactgagggtacaagctgact
agatctgtacagaagtactggaactcaactgcatataaggtatgtgctcc
taacagtgctaatctgaattccatttcattgcctgaactcaactgaactg
ccctcactgaactgccctccctcccaacctgactcactcttaagagtgct
gctcttaaatggcctctttcctgtcttttctggggatagttgggtttatc
tctgactcattttgtcaaatatttcattgatttgtcactttcaaacatgg
ctgctcccttctacaatctaactttacatgtgcactaaaggcatctctgt
accccagccagagggataaaggtgtgtagaatttctgcattccagctgga
tcacaggaacatagaaggtctttggatgtgaaacctttgccagagtggcc
atgttgctggattaaaatttctgtacaaaccattattagaaaatcatatt
caaacttagaagtagacagataagaggttttatagactatgtttttctca
gtaattatcacagaagtaggattgccatgttcaattttcttttctgttat
ctctttcatgagaaaaatgtagaaagaaacattgttccacactattaaaa
agtataattggactggattgatccttcagtttgatttgctaattgtacca
gattcttccttattgtcttgtcatattttttttctataagagctagagaa
aatgagggctgtgtgaaaactgcctttcacagtctattagacttcattgc
tgccatctgatgacaagggatttctaggagtagaaacattttgaaaggta
tgttgaagactgcaaaacagtgattttgcaagaatctttctcaatacaaa
atgaacacttagtgtctttttatgtgttttcctatgaagtggaaccccaa
tgacttggtacataaaaatattatgactgcttactttgctacatatatca
acatatttctgtatatacccacactatagtacatgagtcttgaaataaca
actgcttttgtgtaagttagataagtcaagtatttattgagacacctcta
ttcttaggtattctctttccaaaactgaaactatgcatttaacctgtata
tgaacatttatctaggcactaattatgt

gaattctctgagtatgatttttgtactggtaaggggaatggaaagtcatg
gaacccactaagtccagggttgcatgattataaaggtcatctagaaccga
aaaccaacattgaatgccccaacaccacctcccactcatgatcaggtgtg
tcaacactagaaatggacttcagagactaggaaaattgaattcatttgaa
tgtcttagccagtaatggtgactgttggaagatgccaaaggtctttggag
ctattgaaattaaaacacaacacaatgttgcagcagagcctccctgtgag
agaagatgaggtatacgtgtaattttttttaaaatagtaattagagcttt
tatttattttttattagatattttctttacatttcaaatgctagcctgaa
agttccctatatcctcccctgccctgctcccctacccacacactctcact
tcttgtctctagctgcatatgttagcagaagatggcctagtcagcgatta
ttgggaggagagacatgtaatttgaactttaaagtcaatgctatcccaag
aatatgcaaatagagggcatgaagggagcagaaataagcaacagcctata
accaacctcttttcatcacactgtttcagaagtttcatagaaatagtgta
accaatattactttttaacctcagtctgacatgttttatatctaggtgga
aaactctgtcttctcatttttggagaaatattacagactgactatttttt
cgcattaaattatacattagaggtattgaaatgaatgagctttcccattt
gcctgagcattggtgttggactggagttcttgttcttttccatctgtaat
tcagtttccttacatacaaagactttcactgacacttggcacatctgtcc
tcagacatagcctcaaaaagtgatagattttgttcacttcacttttaccc
agggagaattgtctacctctagtcttctctctctctctctctctctctct
ctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77293250_77294431
seq2: B6Ng01-298H11.b_47_1224

seq1  GAATTCCATGAATGAAACTGCACTGAGTGCACTGAGGGTACAAGCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAATGAAACTGCACTGAGTGCACTGAGGGTACAAGCTGACT  50

seq1  AGATCTGTACAGAAGTACTGGAACTCAACTGCATATAAGGTATGTGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTACAGAAGTACTGGAACTCAACTGCATATAAGGTATGTGCTCC  100

seq1  TAACAGTGCTAATCTGAATTCCATTTCATTGCCTGAACTCAACTGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGCTAATCTGAATTCCATTTCATTGCCTGAACTCAACTGAACTG  150

seq1  CCCTCACTGAACTGCCCTCCCTCCCAACCTGACTCACTCTTAAGAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTGAACTGCCCTCCCTCCCAACCTGACTCACTCTTAAGAGTGCT  200

seq1  GCTCTTAAATGGCCTCTTTCCTGTCTTTTCTGGGGATAGTTGGGTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAATGGCCTCTTTCCTGTCTTTTCTGGGGATAGTTGGGTTTATC  250

seq1  TCTGACTCATTTTGTCAAATATTTCATTGATTTGTCACTTTCAAACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCATTTTGTCAAATATTTCATTGATTTGTCACTTTCAAACATGG  300

seq1  CTGCTCCCTTCTACAATCTAACTTTACATGTGCACTAAAGGCATCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCTTCTACAATCTAACTTTACATGTGCACTAAAGGCATCTCTGT  350

seq1  ACCCCAGCCAGAGGGATAAAGGTGTGTAGAATTTCTGCATTCCAGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCAGAGGGATAAAGGTGTGTAGAATTTCTGCATTCCAGCTGGA  400

seq1  TCACAGGAACATAGAAGGTCTTTGGATGTGAAACCTTTGCCAGAGTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAACATAGAAGGTCTTTGGATGTGAAACCTTTGCCAGAGTGGCC  450

seq1  ATGTTGCTGGATTAAAATTTCTGTACAAACCATTATTAGAAAATCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTGGATTAAAATTTCTGTACAAACCATTATTAGAAAATCATATT  500

seq1  CAAACTTAGAAGTAGACAGATAAGAGGTTTTATAGACTATGTTTTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGAAGTAGACAGATAAGAGGTTTTATAGACTATGTTTTTCTCA  550

seq1  GTAATTATCACAGAAGTAGGATTGCCATGTTCAATTTTCTTTTCTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATCACAGAAGTAGGATTGCCATGTTCAATTTTCTTTTCTGTTAT  600

seq1  CTCTTTCATGAGAAAAATGTAGAAAGAAACATTGTTCCACACTATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATGAGAAAAATGTAGAAAGAAACATTGTTCCACACTATTAAAA  650

seq1  AGTATAATTGGACTGGATTGATCCTTCAGTTTGATTTGCTAATTGTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATTGGACTGGATTGATCCTTCAGTTTGATTTGCTAATTGTACCA  700

seq1  GATTCTTCCTTATTGTCTTGTCATATTTTTTTTCTATAAGAGCTAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCCTTATTGTCTTGTCATATTTTTTTTCTATAAGAGCTAGAGAA  750

seq1  AATGAGGGCTGTGTGAAAACTGCCTTTCACAGTCTATTAGACTTCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCTGTGTGAAAACTGCCTTTCACAGTCTATTAGACTTCATTGC  800

seq1  TGCCATCTGATGACAAGGGATTTCTAGGAGTAGAAACATTTTG-AAGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCATCTGATGACAAGGGATTTCTAGGAGTAGAAACATTTTGAAAGGTA  850

seq1  TGTTGAAGACTGCAAAACAGTGATTTTGCAAGAATCTTTCTCAATACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGACTGCAAAACAGTGATTTTGCAAGAATCTTTCTCAATACAAA  900

seq1  ATGAACACTTAGTGTCTTTTTATGTGTTTTCCTATGAAGTGGAACCCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTTAGTGTCTTTTTATGTGTTTTCCTATGAAGTGGAACCCCAA  950

seq1  TGACTTGGTACATAAAAATATTATGACTGCTTTAACTTTGCTACATAATT  999
      ||||||||||||||||||||||||||||||||  |||||||||||||  |
seq2  TGACTTGGTACATAAAAATATTATGACTGCTT--ACTTTGCTACATA--T  996

seq1  ATCAACATATTTCTGTATATACCCACACTATAGGTACATGAGTCTTGAAA  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCAACATATTTCTGTATATACCCACACTATA-GTACATGAGTCTTGAAA  1045

seq1  TACAAATTGCTTTTGTGTAAG-TAGATAAAGTCAAAGTATTTAATGAGAC  1098
      ||  || |||||||||||||| ||||| ||||| ||||||||| ||||||
seq2  TAACAACTGCTTTTGTGTAAGTTAGAT-AAGTC-AAGTATTTATTGAGAC  1093

seq1  A-CTCTA-TCTTAAGTATTCTCTTTCAAAAATTGAACCTATGCATTTTTT  1146
      | ||||| ||||| |||||||||||| |||| |||| ||||||| |||  
seq2  ACCTCTATTCTTAGGTATTCTCTTTCCAAAACTGAAACTATGCA-TTTAA  1142

seq1  ACTGTATATTAAACATTTATCTAGGCACTAA-TATGT  1182
       ||||||| | |||||||||||||||||||| |||||
seq2  CCTGTATA-TGAACATTTATCTAGGCACTAATTATGT  1178


seq1: chr3_77430532_77431544
seq2: B6Ng01-298H11.g_70_1083 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTAGAGGT  50

seq1  AGACAATTCT-CCTGGGTAAAAGTGAAGTGAACAAAATCTATCACTTTTT  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCTCCCTGGGTAAAAGTGAAGTGAACAAAATCTATCACTTTTT  100

seq1  GAGGCTATGTCTGAGGACAGATGTGCCAAGTGTCAGTGAAAGTCTTTGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGTCTGAGGACAGATGTGCCAAGTGTCAGTGAAAGTCTTTGTA  150

seq1  TGTAAGGAAACTGAATTACAGATGGAAAAGAACAAGAACTCCAGTCCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGAAACTGAATTACAGATGGAAAAGAACAAGAACTCCAGTCCAAC  200

seq1  ACCAATGCTCAGGCAAATGGGAAAGCTCATTCATTTCAATACCTCTAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCTCAGGCAAATGGGAAAGCTCATTCATTTCAATACCTCTAATG  250

seq1  TATAATTTAATGCGAAAAAATAGTCAGTCTGTAATATTTCTCCAAAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTAATGCGAAAAAATAGTCAGTCTGTAATATTTCTCCAAAAATG  300

seq1  AGAAGACAGAGTTTTCCACCTAGATATAAAACATGTCAGACTGAGGTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGAGTTTTCCACCTAGATATAAAACATGTCAGACTGAGGTTAA  350

seq1  AAAGTAATATTGGTTACACTATTTCTATGAAACTTCTGAAACAGTGTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATATTGGTTACACTATTTCTATGAAACTTCTGAAACAGTGTGAT  400

seq1  GAAAAGAGGTTGGTTATAGGCTGTTGCTTATTTCTGCTCCCTTCATGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGTTGGTTATAGGCTGTTGCTTATTTCTGCTCCCTTCATGCCC  450

seq1  TCTATTTGCATATTCTTGGGATAGCATTGACTTTAAAGTTCAAATTACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGCATATTCTTGGGATAGCATTGACTTTAAAGTTCAAATTACAT  500

seq1  GTCTCTCCTCCCAATAATCGCTGACTAGGCCATCTTCTGCTAACATATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCAATAATCGCTGACTAGGCCATCTTCTGCTAACATATGC  550

seq1  AGCTAGAGACAAGAAGTGAGAGTGTGTGGGTAGGGGAGCAGGGCAGGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGACAAGAAGTGAGAGTGTGTGGGTAGGGGAGCAGGGCAGGGGA  600

seq1  GGATATAGGGAACTTTCAGGCTAGCATTTGAAATGTAAAGAAAATATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGGGAACTTTCAGGCTAGCATTTGAAATGTAAAGAAAATATCTA  650

seq1  ATAAAAAATAAATAAAAGCTCTAATTACTATTTTAAAAAAAATTACACGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAATAAAAGCTCTAATTACTATTTTAAAAAAAATTACACGT  700

seq1  ATACCTCATCTTCTCTCACAGGGAGGCTCTGCTGCAACATTGTGTTGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCATCTTCTCTCACAGGGAGGCTCTGCTGCAACATTGTGTTGTGT  750

seq1  TTTAATTTCAATAGCTCCAAAGACCTTTGGCATCTTCCAACAGTCACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCAATAGCTCCAAAGACCTTTGGCATCTTCCAACAGTCACCAT  800

seq1  TACTGGCTAAGACATTCAAATGAATTCAATTTTCCTAGTCTCTGAAGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTAAGACATTCAAATGAATTCAATTTTCCTAGTCTCTGAAGTCC  850

seq1  ATTTCTAGTGTTGACACACCTGATCATGAGTGGGAGGTGGTGTTGGGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTGTTGACACACCTGATCATGAGTGGGAGGTGGTGTTGGGGCA  900

seq1  TTCAATGTTGGTTTTCGGTTCTAGATGACCTTTATAATCATGCAACCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTGGTTTTCGGTTCTAGATGACCTTTATAATCATGCAACCCTG  950

seq1  GACTTAGTGGGTTCCATGACTTTCCATTCCCCTTACCAGTACAAAAATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGTGGGTTCCATGACTTTCCATTCCCCTTACCAGTACAAAAATCA  1000

seq1  TACTCAGAGAATTC  1013
      ||||||||||||||
seq2  TACTCAGAGAATTC  1014


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