BAC Information

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BAC

Clone NameB6Ng01-299J10
Chromosome3 (Build37)
Map Location 83,248,278 - 83,249,397
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299J10.bB6Ng01-299J10.g
ACCGA094389GA094390
length1,1101,167
definitionB6Ng01-299J10.b B6Ng01-299J10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctgtccaatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgattttacagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatctcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaatgagatagaaatggatcaattcgc
attcttctacatgataaccaccagttatgttgtgagtcacgtcagggtgg
ctttgagtttcaaaaattcaccttgtagagcagtgcatgtggaagccttt
ggtaccatcagtgaactccaacacactagtgacagaaaagagagccatgg
taataagaggtgggaatccaccttcccactaatgaagcagtcatttcttg
ctccctctcaattgtcccctaccagtcagatgagacattggttttctttc
atacccacttgggacataattatatggtactgtcaattttccagaacttt
ctaaggcaccctgttttctgcttttcctctgcttggcatgctgagaaaca
cgtccccatgtgctatgtctatactggtcacatttcttgtcactgggaca
aaatacctaaaacattggctcatgttctaagaggatacattgcatcctgg
cagaggaggtaggatgtagttcaaagtgaccaaagcttgtcaccaggcct
cctcacaacttagtggtccaaaagaaaaatagggctagcttgtctgaagc
tgatgtatgttacccatactatatggtacccataagtttgccccactaca
ccagatagatcccatgtcctgagaccagcctttcaggatcgtatcacagc
tgtaagaacagttcacatcacacatagcacctggcatgaatattaaaaca
ctgtacatcc
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgtttttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccattttgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttccctgccgtctactcctcttgggtgaatttgcttccctttttttctag
ggcttttagatgtgttgtcaagctgctagtatgtgctgtctcccgttctt
cttggaggcactcagcgcctatgagtttccctcttagaaatgcttcaatg
gtgtcccataggtttggggtacgtgtggcttcaattttcattaacctcta
aaaagtcttgatttcttctttattccctccttgacaagttcattgagaag
aggtttatcagttccacgtgaagtgtcgggcttccattcattattactag
gtgcgtgctgtacatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83248278_83249397
seq2: B6Ng01-299J10.b_48_1157

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTGTCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATTCTTGATTTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTTGATTTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTCCCCCTGTGCCCATCTCTTCGAGGCTTTTCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTCCCCCTGTGCCCATCTCTTCGAGGCTTTTCCCTAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350

seq1  TCCACTTAGATTTGACCTTAGTACAATGAGATAGAAATGGATCAATTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATTTGACCTTAGTACAATGAGATAGAAATGGATCAATTCGC  400

seq1  ATTCTTCTACATGATAACCACCAGTTATGTTGTGAGTCACGTCAGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACATGATAACCACCAGTTATGTTGTGAGTCACGTCAGGGTGG  450

seq1  CTTTGAGTTTCAAAAATTCACCTTGTAGAGCAGTGCATGTGGAAGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTTTCAAAAATTCACCTTGTAGAGCAGTGCATGTGGAAGCCTTT  500

seq1  GGTACCATCAGTGAACTCCAACACACTAGTGACAGAAAAGAGAGCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATCAGTGAACTCCAACACACTAGTGACAGAAAAGAGAGCCATGG  550

seq1  TAATAAGAGGTGGGAATCCACCTTCCCACTAATGAAGCAGTCATTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAGGTGGGAATCCACCTTCCCACTAATGAAGCAGTCATTTCTTG  600

seq1  CTCCCTCTCAATTGTCCCCTACCAGTCAGATGAGACATTGGTTTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCAATTGTCCCCTACCAGTCAGATGAGACATTGGTTTTCTTTC  650

seq1  ATACCCACTTGGGACATAATTATATGGTACTGTCAATTTTCCAGAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACTTGGGACATAATTATATGGTACTGTCAATTTTCCAGAACTTT  700

seq1  CTAAGGCACCCTGTTTTCTGCTTTTCCTCTGCTTGGCATGCTGAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCACCCTGTTTTCTGCTTTTCCTCTGCTTGGCATGCTGAGAAACA  750

seq1  CGTCCCCATGTGCTATGTCTATACTGGTCACATTTCTTGTCACTGGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCCATGTGCTATGTCTATACTGGTCACATTTCTTGTCACTGGGACA  800

seq1  AAATACCTAAAACATTGGCTCATGTTCTAAGAGGATACATTGCATCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAAAACATTGGCTCATGTTCTAAGAGGATACATTGCATCCTGG  850

seq1  CAGAGGAGGTAGGATGTAGTTCAAAGTGACCAAGGCTTGTCACCAGGCCT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAGGAGGTAGGATGTAGTTCAAAGTGACCAAAGCTTGTCACCAGGCCT  900

seq1  CCTCACAACTTAGTGGTCCAAAAGAAAAATAGGGCTAGCTTGTCTGAAAG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCACAACTTAGTGGTCCAAAAGAAAAATAGGGCTAGCTTGTCTG-AAG  949

seq1  CTGATGTATGTTACCCATACTATATGTTACCCATAAGGTTTGCCCCACTA  1000
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  CTGATGTATGTTACCCATACTATATGGTACCCATAA-GTTTGCCCCACTA  998

seq1  CCACCAGATAGATCCCATGTCCTGAAGACCCAGGCCCTTTCAGAATCGTA  1050
       ||||||||||||||||||||||| ||| ||||  |||||||| ||||||
seq2  -CACCAGATAGATCCCATGTCCTG-AGA-CCAG--CCTTTCAGGATCGTA  1043

seq1  TCACAAGCTTGTTAAGAACAGTTCACATTCAACACATAGCA-CTGGCATG  1099
      |||| ||||   ||||||||||||||||   |||||||||| ||||||||
seq2  TCAC-AGCT--GTAAGAACAGTTCACAT--CACACATAGCACCTGGCATG  1088

seq1  -ATA-TAAAACACTGTAACATCC  1120
       ||| ||||||||||| ||||||
seq2  AATATTAAAACACTGT-ACATCC  1110