BAC Information

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BAC

Clone NameB6Ng01-300P06
Chromosome3 (Build37)
Map Location 19,140,827 - 19,142,045
singlet/doubletsinglet
Overlap genePde7a
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1, Mtfr1
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300P06.bB6Ng01-300P06.g
ACCGA095393GA095394
length1,2251,193
definitionB6Ng01-300P06.b B6Ng01-300P06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcaaaagaaaagaaagaaatggttagcaagccatgcatgcctt
taatctcccagcacccaggaggtagagggagaaagatctctgtgttcgag
gacagccagagctatgtagaaagaccctgtcccaaaatagcaaaacaaac
aaacaaacaaccctgaacagcaaatacttgagtgacagtgtggtgtgggt
ttactgtgctctccaagtccctgaccttggactcttcagtcaccatgaca
gctttctgctacagctgagccatggtacttactgcctgttcccaggagtc
ggtgaggcttgagtgcctcgcctgctcaccaggtacccagtagaactcgc
tgccagacttttaaaatctgatttaagactgcagcacatggactatttga
tggtgaattgtttcagaattctcctaaatttgtaggccataggaacaggg
tggaagactgacctgacctctctatgattaactgaaaaacaaaagaattt
gttctcaagtggaatttatttctctagagaatatttgagccagtggaaag
agtcataactaagaagaggctgagagcagagtgtggtggcacactctggt
acgccccattcttgggaggctgaagcaagagaattgccgtgagctgtaga
cagggctgtacagtgcaaccctgcccacaaacctagaacagaacgtgaac
gaaggtaaatgatctcggcgtctctcaaagccagtcagccacttggtcgt
ttccatgaacgttgctatggtctatctgccgaaagtgggtcttactgaga
ttaaattacagtagaaatgtttggtttttcatttcagtgtatgctggaaa
aagttggaaattggaattttgatatctttctgtttgatagactaacaaat
ggtaagtgaagcatttgacaatactcgagtttctgtggtcattcgcctat
gttgaagctttagtgtgctctgtccttgctgtcattcacttggactgtga
ccctgtgccagcatttgtcttttgttaagtcactttttcaaaaaaccaac
agaaaatcattttcacaattttgtttttacttattagtctgacagtaatc
cacttcatcatgacttggacaggtggcagttataactgcgttttaataac
tcagcctggatcttcaatgcaagctcaattttctttctcagtttcttcag
cggtgtgactgtttatacagtggca
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagataccccaacgggtaataaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaaaaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggaccaggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatatactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaaaactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttatgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
aatagggtgaacacattatgactaacagtaccccggagctcttgactcta
gctgcatttatatcaaaaagatgcctagtcgcatcactggaaagagagcc
cattgactgcaaccttatatgccagatacagaatgccaggccaaaagggg
gatgctgctatggggtactgcggtggtctcacatctatgagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19140827_19142045
seq2: B6Ng01-300P06.b_49_1273 (reverse)

seq1  TGCCACTG--TAAACAGTCACA-CGCTGAAGAAACTGAGAAGAGAAAATG  47
      ||||||||  |||||||||||| |||||||||||||||||| ||||||| 
seq2  TGCCACTGTATAAACAGTCACACCGCTGAAGAAACTGAGAA-AGAAAATT  49

seq1  AAGACTGCAGTG-AGACTCAGGCTGAGTTATTAAAAACGGCAGTAATAAC  96
       ||  |||| || |||  ||||||||||||||||||   ||||| |||||
seq2  GAGCTTGCATTGAAGATCCAGGCTGAGTTATTAAAA--CGCAGTTATAAC  97

seq1  TGCCAACTGGTCCAGTCATGATGAAGT-GATTACTGTCAAGACTAAT-AG  144
      ||||| |||  | |||||||||||||| |||||||||| |||||||| ||
seq2  TGCCACCTGTCCAAGTCATGATGAAGTGGATTACTGTC-AGACTAATAAG  146

seq1  TAAAAACAAAAATTGTG-AAATGA-TTTCTGTTGTTTTTTTG-AAAAGTG  191
      ||||||| ||||||||| |||||| ||||||||| ||||||| |||||||
seq2  TAAAAAC-AAAATTGTGAAAATGATTTTCTGTTGGTTTTTTGAAAAAGTG  195

seq1  AC-TAAC-AAAGACAAAATGCTGGCACAGGGTCACAGTCCAAGTGAATGA  239
      || |||| |||||| |||||||||||||||||||||||||||||||||||
seq2  ACTTAACAAAAGAC-AAATGCTGGCACAGGGTCACAGTCCAAGTGAATGA  244

seq1  CAGCAAGGACAGAGCACACTAAAGCTTCAACATAGGCGAATGACCACAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGACAGAGCACACTAAAGCTTCAACATAGGCGAATGACCACAGA  294

seq1  AACTCGAGTATTGTCAAATGCTTCACTTACCATTTGTTAGTCTATCAAAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAGTATTGTCAAATGCTTCACTTACCATTTGTTAGTCTATCAAAC  344

seq1  AGAAAGATATCAAAATTCCAATTTCCAACTTTTTCCAGCATACACTGAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATATCAAAATTCCAATTTCCAACTTTTTCCAGCATACACTGAAA  394

seq1  TG-AAAACCAAACATTTCTACTGTAATTTAATCTCAGTAAGACCCACTTT  438
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACCAAACATTTCTACTGTAATTTAATCTCAGTAAGACCCACTTT  444

seq1  CGGCAGATAGACCATAGCAACGTTCATGGAAACGACCAAGTGGCTGACTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGATAGACCATAGCAACGTTCATGGAAACGACCAAGTGGCTGACTG  494

seq1  GCTTTGAGAGACGCCGAGATCATTTACCTTCGTTCACGTTCTGTTCTAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGAGACGCCGAGATCATTTACCTTCGTTCACGTTCTGTTCTAGG  544

seq1  TTTGTGGGCAGGGTTGCACTGTACAGCCCTGTCTACAGCTCACGGCAATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGCAGGGTTGCACTGTACAGCCCTGTCTACAGCTCACGGCAATT  594

seq1  CTCTTGCTTCAGCCTCCCAAGAATGGGGCGTACCAGAGTGTGCCACCACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTCAGCCTCCCAAGAATGGGGCGTACCAGAGTGTGCCACCACA  644

seq1  CTCTGCTCTCAGCCTCTTCTTAGTTATGACTCTTTCCACTGGCTCAAATA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTCAGCCTCTTCTTAGTTATGACTCTTTCCACTGGCTCAAATA  694

seq1  TTCTCTAGAGAAATAAATTCCACTTGAGAACAAATTCTTTTGTTTTTCAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGAGAAATAAATTCCACTTGAGAACAAATTCTTTTGTTTTTCAG  744

seq1  TTAATCATAGAGAGGTCAGGTCAGTCTTCCACCCTGTTCCTATGGCCTAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATAGAGAGGTCAGGTCAGTCTTCCACCCTGTTCCTATGGCCTAC  794

seq1  AAATTTAGGAGAATTCTGAAACAATTCACCATCAAATAGTCCATGTGCTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGAGAATTCTGAAACAATTCACCATCAAATAGTCCATGTGCTG  844

seq1  CAGTCTTAAATCAGATTTTAAAAGTCTGGCAGCGAGTTCTACTGGGTACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAAATCAGATTTTAAAAGTCTGGCAGCGAGTTCTACTGGGTACC  894

seq1  TGGTGAGCAGGCGAGGCACTCAAGCCTCACCGACTCCTGGGAACAGGCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCAGGCGAGGCACTCAAGCCTCACCGACTCCTGGGAACAGGCAG  944

seq1  TAAGTACCATGGCTCAGCTGTAGCAGAAAGCTGTCATGGTGACTGAAGAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCATGGCTCAGCTGTAGCAGAAAGCTGTCATGGTGACTGAAGAG  994

seq1  TCCAAGGTCAGGGACTTGGAGAGCACAGTAAACCCACACCACACTGTCAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTCAGGGACTTGGAGAGCACAGTAAACCCACACCACACTGTCAC  1044

seq1  TCAAGTATTTGCTGTTCAGGGTTGTTTGTTTGTTTGTTTTGCTATTTTGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTTGCTGTTCAGGGTTGTTTGTTTGTTTGTTTTGCTATTTTGG  1094

seq1  GACAGGGTCTTTCTACATAGCTCTGGCTGTCCTCGAACACAGAGATCTTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTTTCTACATAGCTCTGGCTGTCCTCGAACACAGAGATCTTT  1144

seq1  CTCCCTCTACCTCCTGGGTGCTGGGAGATTAAAGGCATGCATGGCTTGCT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTACCTCCTGGGTGCTGGGAGATTAAAGGCATGCATGGCTTGCT  1194

seq1  AACCATTTCTTTCTTTTCTTTTGCTGAATTC  1219
      |||||||||||||||||||||||||||||||
seq2  AACCATTTCTTTCTTTTCTTTTGCTGAATTC  1225