BAC Information

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BAC

Clone NameB6Ng01-301N12
Chromosome3 (Build37)
Map Location 141,103,405 - 141,152,646
singlet/doubletdoublet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneLOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N12.bB6Ng01-301N12.g
ACCGA096052GA096053
length1,1371,128
definitionB6Ng01-301N12.b B6Ng01-301N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,103,405 - 141,104,550)(141,151,518 - 141,152,646)
sequence
gaattccgctgattcctagactctgttcctctagttcatatacaagtgtt
cctctgatttgagtatagaaacctcatgatcttcaaaatgaaaccatgag
tttcaggtgaataaatgatccttacccggatataccaccactatcagtgc
acacgtatcagatttccaggaaagatccaaaagtatctaagtgggattat
gttctactgaccgaagtgggttctacacaaatgcgcaggttgccattgca
tccccacctctctttatataagacatgagtcatctgcagaatgtgcatct
gttttctggaaaacattttcaaattaagaaccttgtcaattttaattagg
ataatgacacaaaccacactggtgtggttattttctctcatctaataaac
tcctcactaaagatctaaaaatgtattttaaacacataaaacaagatcat
atccagttattaagggcagctgtgtattttcagctgcttacaagtttcta
cccagagaaacaatttgttttacccatcatatctaatgtcctgaagtcta
attattatggaataatttaataggttgttaactatataatctcactgaat
ctgatccattataaaccataatatatcatttaacaattattgctataaat
attttattggaataacaaaaataatttgagaaagacaggatgcttacatt
tttaaaatatatgacttttttgtcttgtattgctgaaccttctaataata
acagagcagcacttttatgaagatttaaaagaaaatgacatggataaata
cagaacttaacaaacatcagaaaaatacacaactaaaaaaattaaattaa
aatgtattacaatcaacatctactgagtgtcctctccatgtaatatatta
acctaaaaagaattttaagttagaatcaaaatatcttactgtgcaattta
taaaaaataacgtgtaaaatgcatgtgctttatctgtgtgtgtcctcatt
tgaatatgcattttttctttgtttactttttatttagagattgtattcca
ttgcattatccctccattttccactaacctttgcatataataaaccccct
ggctctcaattaattcaatgaccctctcttcatcgat

gaattctaaaaccatcatgaacccaacctaatttctccccttgtgattaa
gaaggcattacttgatcttgcaatgttctgtagagcaacatcctttgaaa
aggtgtgactctcagtaacctttctttgtattcacaaaatgactaaacat
acctgtgaaactacgtggtctttatgcctcgctcataataatacatcttg
tcctttatggacctcattgatgctttagtgacataaagtttttgcagtag
gaatgaaaatgataggggaaatactttaaggaacctgcccgtgggacata
taaatatacacacaaacttttttttcaggctctccagtaagtttaagctt
tctaagccatgtgttttaaaaaggaatcatcaaaaactgcttaaaataat
tgactgattctagaataaattcactatttgcaatatctaagactttctaa
ttagtaaatcagtgtaaaattaaaacaagcatttaaataattatcaccaa
actgtatcccaatcattccataatgagctaattcaagtgaaaaattgaaa
atggctcccaaagagtcttctcattttctggagttgaaatagcaggtcac
ggtgttgtctttgctctctactgcttgaaatctacttgtggactggaaat
gatctaaatctctcctcaacatgaaaagctaacaacaaaagaaaagttgt
ttctactgatactgcatgaacacgaatagtcaacagctcaattttgggtc
tgttgaaacataacactaaaaagacaatcatatgaatgaaccaaaactgt
ctttactagaagcacaatcctagcttttagtaaaaatgttattaagtgat
gatagtaataaatccatcttgctgtcttttggaatgaggatgacctcata
ggttcatgtatttgaatacttatttcccagttgacggaactgtttgtgaa
ggataggacttgtggctttgttggaggagatgcgtgactggggggaggag
ctttgaagtttctactttcaatagtgtgtgtaagaacaaaagctcttagt
gacccctccagaacaatgctaactgcagcctactgtatgaccctatatga
ttttggacccccctccgagctgtaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141103405_141104550
seq2: B6Ng01-301N12.b_48_1184

seq1  GAATTCCGCTGATTCCTAGACTCTGTTCCTCTAGTTCATATACAAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCTGATTCCTAGACTCTGTTCCTCTAGTTCATATACAAGTGTT  50

seq1  CCTCTGATTTGAGTATAGAAACCTCATGATCTTCAAAATGAAACCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATTTGAGTATAGAAACCTCATGATCTTCAAAATGAAACCATGAG  100

seq1  TTTCAGGTGAATAAATGATCCTTACCCGGATATACCACCACTATCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTGAATAAATGATCCTTACCCGGATATACCACCACTATCAGTGC  150

seq1  ACACGTATCAGATTTCCAGGAAAGATCCAAAAGTATCTAAGTGGGATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTATCAGATTTCCAGGAAAGATCCAAAAGTATCTAAGTGGGATTAT  200

seq1  GTTCTACTGACCGAAGTGGGTTCTACACAAATGCGCAGGTTGCCATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTGACCGAAGTGGGTTCTACACAAATGCGCAGGTTGCCATTGCA  250

seq1  TCCCCACCTCTCTTTATATAAGACATGAGTCATCTGCAGAATGTGCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTCTCTTTATATAAGACATGAGTCATCTGCAGAATGTGCATCT  300

seq1  GTTTTCTGGAAAACATTTTCAAATTAAGAACCTTGTCAATTTTAATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGGAAAACATTTTCAAATTAAGAACCTTGTCAATTTTAATTAGG  350

seq1  ATAATGACACAAACCACACTGGTGTGGTTATTTTCTCTCATCTAATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACACAAACCACACTGGTGTGGTTATTTTCTCTCATCTAATAAAC  400

seq1  TCCTCACTAAAGATCTAAAAATGTATTTTAAACACATAAAACAAGATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTAAAGATCTAAAAATGTATTTTAAACACATAAAACAAGATCAT  450

seq1  ATCCAGTTATTAAGGGCAGCTGTGTATTTTCAGCTGCTTACAAGTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTATTAAGGGCAGCTGTGTATTTTCAGCTGCTTACAAGTTTCTA  500

seq1  CCCAGAGAAACAATTTGTTTTACCCATCATATCTAATGTCCTGAAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAAACAATTTGTTTTACCCATCATATCTAATGTCCTGAAGTCTA  550

seq1  ATTATTATGGAATAATTTAATAGGTTGTTAACTATATAATCTCACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGGAATAATTTAATAGGTTGTTAACTATATAATCTCACTGAAT  600

seq1  CTGATCCATTATAAACCATAATATATCATTTAACAATTATTGCTATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCATTATAAACCATAATATATCATTTAACAATTATTGCTATAAAT  650

seq1  ATTTTATTGGAATAACAAAAATAATTTGAGAAAGACAGGATGCTTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGGAATAACAAAAATAATTTGAGAAAGACAGGATGCTTACATT  700

seq1  TTTAAAATATATGACTTTTTTGTCTTGTATTGCTGAACCTTCTAATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATATGACTTTTTTGTCTTGTATTGCTGAACCTTCTAATAATA  750

seq1  ACAGAGCAGCACTTTTATGAAGATTTAAAAGAAAATGACATGGATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAGCACTTTTATGAAGATTTAAAAGAAAATGACATGGATAAATA  800

seq1  CAGAACTTAACAAACATCAGAAAAATACACAACTAAAAAAATTAAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTAACAAACATCAGAAAAATACACAACTAAAAAAATTAAATTAA  850

seq1  AATGTATTACAATCAACATCTACTGAGTGTCCTCTCCATGTAATATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTACAATCAACATCTACTGAGTGTCCTCTCCATGTAATATATTA  900

seq1  ACCTAAAAAGAATTTTAAGTTAGAATCAAAATATCTTACTGTGCAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAAGAATTTTAAGTTAGAATCAAAATATCTTACTGTGCAATTTA  950

seq1  ATAAAAATAACGTGTAAAATGCATGTGCTTTATCTGTGTGTGTCCTCATT  1000
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAACGTGTAAAATGCATGTGCTTTATCTGTGTGTGTCCTCATT  1000

seq1  TGAATATGCATTTTTCTTTTGTTTACTTTTTATTTTAGAGATTGTATTCA  1050
      |||||||||||||||  ||||||||||||||| |||||||||||||||| 
seq2  TGAATATGCATTTTTTCTTTGTTTACTTTTTA-TTTAGAGATTGTATTCC  1049

seq1  ATTGCATTTATCCCTTCCCATTTTTTCCACCTAAACTTTTGCATATAATA  1100
      |||||| ||||||||  |||  ||||||||   ||| |||||||||||||
seq2  ATTGCA-TTATCCCT--CCA--TTTTCCAC--TAACCTTTGCATATAATA  1092

seq1  AAACCCCCTGCTCTCATTAAAATTCATGACCTCTCTTTTCATCGAT  1146
      || ||||  ||||||| | || |  |||||| |||| |||||||||
seq2  AACCCCCTGGCTCTCAATTAATTCAATGACC-CTCTCTTCATCGAT  1137


seq1: chr3_141151518_141152646
seq2: B6Ng01-301N12.g_67_1194 (reverse)

seq1  AGCTTACAGCTCTGAGGGGGGGTCCAAAATCATATTGGGGGTCATACAGT  50
      |||||||||||| || |||||||||||||||||||   ||||||||||||
seq2  AGCTTACAGCTCGGA-GGGGGGTCCAAAATCATAT--AGGGTCATACAGT  47

seq1  AGCTGGCAAGTAAGCATGGTTCTGGAGGGGTCACTAAGAGCTTTTGTCTT  100
      ||   || ||| ||||| |||||||||||||||||||||||||||||  |
seq2  AGGCTGC-AGTTAGCATTGTTCTGGAGGGGTCACTAAGAGCTTTTGTTCT  96

seq1  TACACACAACTA-TGGAAGTAGAAACTTCAAAGCTC--TCCCCCAGTCAC  147
      ||||||| |||| || ||||||||||||||||||||   |||||||||||
seq2  TACACAC-ACTATTGAAAGTAGAAACTTCAAAGCTCCTCCCCCCAGTCAC  145

seq1  GCATCTCCTCCAACAAAGCCACAAGTCCTATCCTTCACAAACAGTTCCGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCTCCAACAAAGCCACAAGTCCTATCCTTCACAAACAGTTCCGT  195

seq1  CAACTGGGAAATAAGTATTCAAATACATGAACCTATGAGGTCATCCTCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGAAATAAGTATTCAAATACATGAACCTATGAGGTCATCCTCAT  245

seq1  T-CAAAAGACAGCAAGATGGATTTATTACTATCATCACTTAATAACATTT  296
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGACAGCAAGATGGATTTATTACTATCATCACTTAATAACATTT  295

seq1  TTACTAAAAGCTAGGATTGTGCTTCTAGTAAAGACAGTTTTGGTTCATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAAGCTAGGATTGTGCTTCTAGTAAAGACAGTTTTGGTTCATTC  345

seq1  ATATGATTGTCTTTTTAGTGTTATGTTTCAACAGACCCAAAATTGAGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTGTCTTTTTAGTGTTATGTTTCAACAGACCCAAAATTGAGCTG  395

seq1  TTGACTATTCGTGTTCATGCAGTATCAGTAGAAACAACTTTTCTTTTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATTCGTGTTCATGCAGTATCAGTAGAAACAACTTTTCTTTTGTT  445

seq1  GTTAGCTTTTCATGTTGAGGAGAGATTTAGATCATTTCCAGTCCACAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTTTCATGTTGAGGAGAGATTTAGATCATTTCCAGTCCACAAGT  495

seq1  AGATTTCAAGCAGTAGAGAGCAAAGACAACACCGTGACCTGCTATTTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAAGCAGTAGAGAGCAAAGACAACACCGTGACCTGCTATTTCAA  545

seq1  CTCCAGAAAATGAGAAGACTCTTTGGGAGCCATTTTCAATTTTTCACTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAAATGAGAAGACTCTTTGGGAGCCATTTTCAATTTTTCACTTG  595

seq1  AATTAGCTCATTATGGAATGATTGGGATACAGTTTGGTGATAATTATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTCATTATGGAATGATTGGGATACAGTTTGGTGATAATTATTTA  645

seq1  AATGCTTGTTTTAATTTTACACTGATTTACTAATTAGAAAGTCTTAGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTTTTAATTTTACACTGATTTACTAATTAGAAAGTCTTAGATA  695

seq1  TTGCAAATAGTGAATTTATTCTAGAATCAGTCAATTATTTTAAGCAGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATAGTGAATTTATTCTAGAATCAGTCAATTATTTTAAGCAGTTT  745

seq1  TTGATGATTCCTTTTTAAAACACATGGCTTAGAAAGCTTAAACTTACTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATTCCTTTTTAAAACACATGGCTTAGAAAGCTTAAACTTACTGG  795

seq1  AGAGCCTGAAAAAAAAGTTTGTGTGTATATTTATATGTCCCACGGGCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGAAAAAAAAGTTTGTGTGTATATTTATATGTCCCACGGGCAGG  845

seq1  TTCCTTAAAGTATTTCCCCTATCATTTTCATTCCTACTGCAAAAACTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGTATTTCCCCTATCATTTTCATTCCTACTGCAAAAACTTTA  895

seq1  TGTCACTAAAGCATCAATGAGGTCCATAAAGGACAAGATGTATTATTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAAAGCATCAATGAGGTCCATAAAGGACAAGATGTATTATTATG  945

seq1  AGCGAGGCATAAAGACCACGTAGTTTCACAGGTATGTTTAGTCATTTTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGCATAAAGACCACGTAGTTTCACAGGTATGTTTAGTCATTTTGT  995

seq1  GAATACAAAGAAAGGTTACTGAGAGTCACACCTTTTCAAAGGATGTTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAAGAAAGGTTACTGAGAGTCACACCTTTTCAAAGGATGTTGCT  1045

seq1  CTACAGAACATTGCAAGATCAAGTAATGCCTTCTTAATCACAAGGGGAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAACATTGCAAGATCAAGTAATGCCTTCTTAATCACAAGGGGAGA  1095

seq1  AATTAGGTTGGGTTCATGATGGTTTTAGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  AATTAGGTTGGGTTCATGATGGTTTTAGAATTC  1128


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