BAC Information

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BAC

Clone NameB6Ng01-303N05
Chromosome3 (Build37)
Map Location 58,893,024 - 59,044,448
singlet/doubletdoublet
Overlap geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416
Downstream geneIgsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303N05.bB6Ng01-303N05.g
ACCGA097532GA097533
length9791,076
definitionB6Ng01-303N05.b B6Ng01-303N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,893,024 - 58,893,541)(59,043,359 - 59,044,448)
sequence
gaattctgtttgctctcattgtctcagttaggatttctgttgctttaatg
aaacaccatgacccaaaagctagttggggaggaaatggtttgtccacctt
acactttcatattgctcttcattgccaaaggaagtcaggacaggaattta
aggagggcagagacctggaggcaggagctgatgtaaaagccatggagggg
tgctgcttgctggcttgcttcacatggaccaaggacactaattaaaaaaa
ataccttacagataaattttatggaggcatttttttttttcaatcgaggc
tttttcatctttgatgactctagctttgtgtcaagttgacataagaccag
tcagaactgaccctttgtcatcatgacacacaaacacatcactattaaac
catagctctttctttcttatccctaagatctccaaaagttccagtctttg
taaatacaaacacattaagattttagtccctttgaaatagcctctctctt
aaaatttaaagtctcttaactgtgggctccagtaaaagttaaaaaaaaaa
tactttcttactttaagaaggaaaaaaatcatgactcagtcataatcaaa
ccaactccacccactcagtgtcaggtcttgatcttctgggtttctccaaa
gagcttgggtcacttctccagctctgccttctgtagtgcacacagcttta
ctctaagctccagctggctccataccactgctgctgccgctcttcttggt
tatcccatggtactggcatttccaaagtgctgggcactttctccaacagt
ctgtcatagactctcttcctggtgccaagactccacttctttgcatgacc
ccttcagtcctaggccttcaactgccactgaggctgcaccttcacccatg
gcctctcctggtgtcacatcatagcatcagctattccctgtgactcctcc
atgccttcaaaaccagtatgacctgggtg
gaattctttaatgtctacccagcacttagaagtatgtatcaaacataaaa
agaaactcgattgctcataaaactatgaagttattaaatatcaatttttg
ttacactgaatactagaaaagctttaaaaaaccctcagaaacatcactta
aaagaaacatatgtaatgaaatgaattctccacactgcaattaacactca
aaactccatcacttaggctgatttgactagaaaaaaaaaagaaaaggcta
ggcagagaagtttaagtcaacacaaagtttcacaacttccattagttgac
atggactgccaagttcactagtttggaaagaagtaactcttcagtgcagg
aaatctgctgagtttgatgaagccgtggtttggaatcccattcctcttct
ttgtactacagacaaatttatcttggcttcttatgtacgaagatgaaaat
ccattccctgtagaggcatcctttataataatgccagcctttcaagagta
ccaacaccacagccactttcttcccttccaaaccatggctcctctgtcca
tacaagatggccatcagtatggcatagaagacaacacctgtggcccatcc
atacatgtgtctgactccaccaccaccctgtatccgacacaggactccac
ataacatgtcacccatagtgtcaccaatggctgagactctgaaaagagtt
taataatattcttccatcttaccaccatcactgcacaaagaaggctatta
ggtgacctgaacagagaaaggaaaggggaggctgggtgcatagtggacca
ctctccattattcagaagataaggaagatcaagaggtggtagtctgcaat
gttcaggcccactagggacaggcattctccagcatcagacatggatgcca
ggaaaataaggaacccgcagtgcaatatcccaaggtagtctgaaggatgt
cacctgatgggaacttggtaatataagaggacacatgctgtttgtctggg
ttactcactcggatgattgtgtgtatatcatccattgctgcaaattttat
gatgtcatttttttttctaacagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58893024_58893541
seq2: B6Ng01-303N05.b_47_564

seq1  GAATTCTGTTTGCTCTCATTGTCTCAGTTAGGATTTCTGTTGCTTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGCTCTCATTGTCTCAGTTAGGATTTCTGTTGCTTTAATG  50

seq1  AAACACCATGACCCAAAAGCTAGTTGGGGAGGAAATGGTTTGTCCACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATGACCCAAAAGCTAGTTGGGGAGGAAATGGTTTGTCCACCTT  100

seq1  ACACTTTCATATTGCTCTTCATTGCCAAAGGAAGTCAGGACAGGAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCATATTGCTCTTCATTGCCAAAGGAAGTCAGGACAGGAATTTA  150

seq1  AGGAGGGCAGAGACCTGGAGGCAGGAGCTGATGTAAAAGCCATGGAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGAGACCTGGAGGCAGGAGCTGATGTAAAAGCCATGGAGGGG  200

seq1  TGCTGCTTGCTGGCTTGCTTCACATGGACCAAGGACACTAATTAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGCTGGCTTGCTTCACATGGACCAAGGACACTAATTAAAAAAA  250

seq1  ATACCTTACAGATAAATTTTATGGAGGCATTTTTTTTTTTCAATCGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTACAGATAAATTTTATGGAGGCATTTTTTTTTTTCAATCGAGGC  300

seq1  TTTTTCATCTTTGATGACTCTAGCTTTGTGTCAAGTTGACATAAGACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCTTTGATGACTCTAGCTTTGTGTCAAGTTGACATAAGACCAG  350

seq1  TCAGAACTGACCCTTTGTCATCATGACACACAAACACATCACTATTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTGACCCTTTGTCATCATGACACACAAACACATCACTATTAAAC  400

seq1  CATAGCTCTTTCTTTCTTATCCCTAAGATCTCCAAAAGTTCCAGTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCTTTCTTTCTTATCCCTAAGATCTCCAAAAGTTCCAGTCTTTG  450

seq1  TAAATACAAACACATTAAGATTTTAGTCCCTTTGAAATAGCCTCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAACACATTAAGATTTTAGTCCCTTTGAAATAGCCTCTCTCTT  500

seq1  AAAATTTAAAGTCTCTTA  518
      ||||||||||||||||||
seq2  AAAATTTAAAGTCTCTTA  518

seq1: chr3_59043359_59044448
seq2: B6Ng01-303N05.g_67_1142 (reverse)

seq1  TCGCTGTTAGAAAAAAAAATGACATCATAAAATTTGCAGGCAAATGGATG  50
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  TCGCTGTTAGAAAAAAAAATGACATCATAAAATTTGCAG--CAATGGATG  48

seq1  GAATAATAACAACAACAAATCATCCCGAGTGAGGTAACCCAGACAAACAG  100
        ||       |||   |||||| |||||||| |||||||||||||||||
seq2  ATAT-------ACACACAATCAT-CCGAGTGA-GTAACCCAGACAAACAG  89

seq1  CATGTTGTCCTCCTTTATAATTACCAAGTTCCCCATCAGGTGACATCCTT  150
      |||| |||||||  |||| ||||||||||| |||||||||||||||||||
seq2  CATG-TGTCCTC--TTAT-ATTACCAAGTT-CCCATCAGGTGACATCCTT  134

seq1  CAGACTACC-TGGGATATTGCACTGC-GGTTCCTTATTTTCCTGGCATCC  198
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CAGACTACCTTGGGATATTGCACTGCGGGTTCCTTATTTTCCTGGCATCC  184

seq1  ATGTCTGATGCTGGAGAATGCCTGTCCCTAGTGGGCCTGAACATTGCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGATGCTGGAGAATGCCTGTCCCTAGTGGGCCTGAACATTGCAGA  234

seq1  CTACCACCTCTTGATCTTCCTTATCTTCTGAATAATGGAGAGTGGTCCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACCTCTTGATCTTCCTTATCTTCTGAATAATGGAGAGTGGTCCAC  284

seq1  TATGCACCCAGCCTCCCCTTTCCTTTCTCTGTTCAGGTCACCTAATAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCCAGCCTCCCCTTTCCTTTCTCTGTTCAGGTCACCTAATAGCC  334

seq1  TTCTTTGTGCAGTGATGGTGGTAAGATGGAAGAATATTATTAAACTCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGCAGTGATGGTGGTAAGATGGAAGAATATTATTAAACTCTTT  384

seq1  TCAGAGTCTCAGCCATTGGTGACACTATGGGTGACATGTTATGTGGAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCTCAGCCATTGGTGACACTATGGGTGACATGTTATGTGGAGTC  434

seq1  CTGTGTCGGATACAGGGTGGTGGTGGAGTCAGACACATGTATGGATGGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCGGATACAGGGTGGTGGTGGAGTCAGACACATGTATGGATGGGC  484

seq1  CACAGGTGTTGTCTTCTATGCCATACTGATGGCCATCTTGTATGGACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTTGTCTTCTATGCCATACTGATGGCCATCTTGTATGGACAGA  534

seq1  GGAGCCATGGTTTGGAAGGGAAGAAAGTGGCTGTGGTGTTGGTACTCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGGTTTGGAAGGGAAGAAAGTGGCTGTGGTGTTGGTACTCTTG  584

seq1  AAAGGCTGGCATTATTATAAAGGATGCCTCTACAGGGAATGGATTTTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGGCATTATTATAAAGGATGCCTCTACAGGGAATGGATTTTCAT  634

seq1  CTTCGTACATAAGAAGCCAAGATAAATTTGTCTGTAGTACAAAGAAGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTACATAAGAAGCCAAGATAAATTTGTCTGTAGTACAAAGAAGAGG  684

seq1  AATGGGATTCCAAACCACGGCTTCATCAAACTCAGCAGATTTCCTGCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATTCCAAACCACGGCTTCATCAAACTCAGCAGATTTCCTGCACT  734

seq1  GAAGAGTTACTTCTTTCCAAACTAGTGAACTTGGCAGTCCATGTCAACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTACTTCTTTCCAAACTAGTGAACTTGGCAGTCCATGTCAACTA  784

seq1  ATGGAAGTTGTGAAACTTTGTGTTGACTTAAACTTCTCTGCCTAGCCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTTGTGAAACTTTGTGTTGACTTAAACTTCTCTGCCTAGCCTTT  834

seq1  TCTTTTTTTTTTCTAGTCAAATCAGCCTAAGTGATGGAGTTTTGAGTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTCTAGTCAAATCAGCCTAAGTGATGGAGTTTTGAGTGTT  884

seq1  AATTGCAGTGTGGAGAATTCATTTCATTACATATGTTTCTTTTAAGTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGTGTGGAGAATTCATTTCATTACATATGTTTCTTTTAAGTGAT  934

seq1  GTTTCTGAGGGTTTTTTAAAGCTTTTCTAGTATTCAGTGTAACAAAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGGGTTTTTTAAAGCTTTTCTAGTATTCAGTGTAACAAAAATT  984

seq1  GATATTTAATAACTTCATAGTTTTATGAGCAATCGAGTTTCTTTTTATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAATAACTTCATAGTTTTATGAGCAATCGAGTTTCTTTTTATGT  1034

seq1  TTGATACATACTTCTAAGTGCTGGGTAGACATTAAAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATACTTCTAAGTGCTGGGTAGACATTAAAGAATTC  1076