BAC Information

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BAC

Clone NameB6Ng01-307H01
Chromosome3 (Build37)
Map Location 152,462,548 - 152,606,724
singlet/doubletdoublet
Overlap geneSt6galnac5
Upstream genePtgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307H01.bB6Ng01-307H01.g
ACCGA100212GA100213
length946987
definitionB6Ng01-307H01.b B6Ng01-307H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,605,787 - 152,606,724)(152,462,548 - 152,463,522)
sequence
gaattctcataaataagctgtgtctattacacacacacacacacacacac
acacacacacacacacacacacacaagaatgcagcctctaaaatgggagg
ctttctagttttatatcctttcataccctctgtgtagctgggggcgatct
tgctgaagaactaacacattcatggctctctccacataaatggctccccc
acctcacaaggacatctgggtcaggtctaagtgaagcttcctagcaggac
cagaccgccctcaccactcagccattcccaccagccttcttactcactag
agacagcgagctcacagcttttcaaatttgcagagaatgtctgtgccatt
gtccctaacagctctgctcactgtgggttttccctaaatccccacagatt
gtcgacaccatccctaatggttttccatctgttggtccagcggtgtctca
ggagtcttgtctgagtcttctctaacacacatttctcactcaacaataca
aggcggccaaaggaaatatgcagtgtttgtggcgcatggggcgtgtcctt
agctgttggattgtctagggggcgtgtccttggctgctgggttgtctagg
gggcgtgcccttggctgtccggttgtctagagcatatagtttttggttta
agaatgtgtgttaattcactccgtatccctagtgcctcacggggtataat
gctgagtaaatgtgggcagagctaagctaaattcccaaagaccaagtcaa
gcattcatagcagcttaataaaacgtctgacctttcttttgttatacgct
cagcaaactcagatacctttgccccaagataagcttcgattaggggagtc
aaagctgcagtaagaacatgaatcagggtgctccttggacagatgttgtg
agcactgtgcatgcagaaaatagaaaatgcccattgaccctgttgc
gaattcactaagaccacaggaaaggcttctgtgagctgtggagtagaata
tcgctcttcgtctgtcactgagctgcatcgtgggcagagatggagtctga
gcctcagagtgctgagtgtttgcccatggcagtcatatctagtcagtagg
caaccagagggctaagcatcgctattccctgccaggctcctcatccacta
ggccaagaaccctgttcaatgtctttttcctactctcttgtctacttgtc
cttaagactaactttgaagagttacctctgatgacgtttcctgtgcccaa
ccctgcttggtacagagtccttgttctacagtggttgaagccccagtcct
cacaccagaccaaagccaggtccgtggttcacactgcagcttcggcatgt
gttacaagggcttgggacacgagtggggggtcactcatcctgatgggact
cccgttctcccacacaccaagggctcagaaaggtgcactcatggaattct
aatgcatttcagctgagaccaaagtcctcaggcctggagcacaggcgctc
tggccagaggctgaagggaggtcattggggcaggagtgcagttcccataa
tacgtggacataggggaggagttcaggccactggtctctgagcaggcaga
aatggtcacgattactgagcatgctaaggcctagattgccctctggtggc
cattcagattggttcaaattagagtgtacttaggacaagccacagagaaa
gaagaggtgggagacaaccctaatttgaataaactttgcaacaggcaccc
caggggtgtctgggagttgatttttatactttggcaatgcccatttcccc
agcctgagttggtgtcttagagtttcatttgctgtgaagagacaccatga
ccaatgccaagtctttataaaaggacaacattttaatttgtgggttgact
tactgggttcagaggtttcagtcccattatcatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_152605787_152606724
seq2: B6Ng01-307H01.b_47_992 (reverse)

seq1  GCAACA-GGTC-ATGGGCCTTTTCTA-TTTCTGCATGCACAGTGCTCAC-  46
      |||||| |||| |||||| ||||||| |||||||||||||||||||||| 
seq2  GCAACAGGGTCAATGGGCATTTTCTATTTTCTGCATGCACAGTGCTCACA  50

seq1  ACATCTGTCC-AGGAGCACCCTGATTCATGTTCTTACTGCAGCTTTGACT  95
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTCCAAGGAGCACCCTGATTCATGTTCTTACTGCAGCTTTGACT  100

seq1  -CCCTAATCGAAGCTTATCTTGGGGCAAAGGTATCTGAGTTTGCTGAGCG  144
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATCGAAGCTTATCTTGGGGCAAAGGTATCTGAGTTTGCTGAGCG  150

seq1  TATAAC-AAAGAAAGGTCAGACG-TTTATTAAGCTGCTATGAATGCTTGA  192
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAACAAAAGAAAGGTCAGACGTTTTATTAAGCTGCTATGAATGCTTGA  200

seq1  CTTGGTCTTTGGGAATTTAGCTTAGCTCTGCCCACATTTACTCAGCATTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTTGGGAATTTAGCTTAGCTCTGCCCACATTTACTCAGCATTA  250

seq1  TACCCCGTGAGGCACTAGGGATACGGAGTGAATTAACACACATTCTTAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCGTGAGGCACTAGGGATACGGAGTGAATTAACACACATTCTTAAA  300

seq1  CCAAAAACTATATGCTCTAGACAACCGGACAGCCAAGGGCACGCCCCCTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACTATATGCTCTAGACAACCGGACAGCCAAGGGCACGCCCCCTA  350

seq1  GACAACCCAGCAGCCAAGGACACGCCCCCTAGACAATCCAACAGCTAAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCAGCAGCCAAGGACACGCCCCCTAGACAATCCAACAGCTAAGG  400

seq1  ACACGCCCCATGCGCCACAAACACTGCATATTTCCTTTGGCCGCCTTGTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCCCATGCGCCACAAACACTGCATATTTCCTTTGGCCGCCTTGTA  450

seq1  TTGTTGAGTGAGAAATGTGTGTTAGAGAAGACTCAGACAAGACTCCTGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTGAGAAATGTGTGTTAGAGAAGACTCAGACAAGACTCCTGAG  500

seq1  ACACCGCTGGACCAACAGATGGAAAACCATTAGGGATGGTGTCGACAATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCTGGACCAACAGATGGAAAACCATTAGGGATGGTGTCGACAATC  550

seq1  TGTGGGGATTTAGGGAAAACCCACAGTGAGCAGAGCTGTTAGGGACAATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGATTTAGGGAAAACCCACAGTGAGCAGAGCTGTTAGGGACAATG  600

seq1  GCACAGACATTCTCTGCAAATTTGAAAAGCTGTGAGCTCGCTGTCTCTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACATTCTCTGCAAATTTGAAAAGCTGTGAGCTCGCTGTCTCTAG  650

seq1  TGAGTAAGAAGGCTGGTGGGAATGGCTGAGTGGTGAGGGCGGTCTGGTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGAAGGCTGGTGGGAATGGCTGAGTGGTGAGGGCGGTCTGGTCC  700

seq1  TGCTAGGAAGCTTCACTTAGACCTGACCCAGATGTCCTTGTGAGGTGGGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAAGCTTCACTTAGACCTGACCCAGATGTCCTTGTGAGGTGGGG  750

seq1  GAGCCATTTATGTGGAGAGAGCCATGAATGTGTTAGTTCTTCAGCAAGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTTATGTGGAGAGAGCCATGAATGTGTTAGTTCTTCAGCAAGAT  800

seq1  CGCCCCCAGCTACACAGAGGGTATGAAAGGATATAAAACTAGAAAGCCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCAGCTACACAGAGGGTATGAAAGGATATAAAACTAGAAAGCCTC  850

seq1  CCATTTTAGAGGCTGCATTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAGAGGCTGCATTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  900

seq1  GTGTGTGTGTGTGTGTGTAATAGACACAGCTTATTTATGAGAATTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTAATAGACACAGCTTATTTATGAGAATTC  946

seq1: chr3_152462548_152463522
seq2: B6Ng01-307H01.g_68_1054

seq1  GAATTCACTAAGACCACAGGAAAGGCTTCTGTGAGCTGTGGAGTAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGACCACAGGAAAGGCTTCTGTGAGCTGTGGAGTAGAATA  50

seq1  TCGCTCTTCGTCTGTCACTGAGCTGCATCGTGGGCAGAGATGGAGTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCTTCGTCTGTCACTGAGCTGCATCGTGGGCAGAGATGGAGTCTGA  100

seq1  GCCTCAGAGTGCTGAGTGTTTGCCCATGGCAGTCATATCTAGTCAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAGTGCTGAGTGTTTGCCCATGGCAGTCATATCTAGTCAGTAGG  150

seq1  CAACCAGAGGGCTAAGCATCGCTATTCCCTGCCAGGCTCCTCATCCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGGGCTAAGCATCGCTATTCCCTGCCAGGCTCCTCATCCACTA  200

seq1  GGCCAAGAACCCTGTTCAATGTCTTTTTCCTACTCTCTTGTCTACTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAACCCTGTTCAATGTCTTTTTCCTACTCTCTTGTCTACTTGTC  250

seq1  CTTAAGACTAACTTTGAAGAGTTACCTCTGATGACGTTTCCTGTGCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTAACTTTGAAGAGTTACCTCTGATGACGTTTCCTGTGCCCAA  300

seq1  CCCTGCTTGGTACAGAGTCCTTGTTCTACAGTGGTTGAAGCCCCAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTGGTACAGAGTCCTTGTTCTACAGTGGTTGAAGCCCCAGTCCT  350

seq1  CACACCAGACCAAAGCCAGGTCCGTGGTTCACACTGCAGCTTCGGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGACCAAAGCCAGGTCCGTGGTTCACACTGCAGCTTCGGCATGT  400

seq1  GTTACAAGGGCTTGGGACACGAGTGGGGGGTCACTCATCCTGATGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGGGCTTGGGACACGAGTGGGGGGTCACTCATCCTGATGGGACT  450

seq1  CCCGTTCTCCCACACACCAAGGGCTCAGAAAGGTGCACTCATGGAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCTCCCACACACCAAGGGCTCAGAAAGGTGCACTCATGGAATTCT  500

seq1  AATGCATTTCAGCTGAGACCAAAGTCCTCAGGCCTGGAGCACAGGCGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTTCAGCTGAGACCAAAGTCCTCAGGCCTGGAGCACAGGCGCTC  550

seq1  TGGCCAGAGGCTGAAGGGAGGTCATTGGGGCAGGAGTGCAGTTCCCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAGGCTGAAGGGAGGTCATTGGGGCAGGAGTGCAGTTCCCATAA  600

seq1  TACGTGGACATAGGGGAGGAGTTCAGGCCACTGGTCTCTGAGCAGGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGACATAGGGGAGGAGTTCAGGCCACTGGTCTCTGAGCAGGCAGA  650

seq1  AATGGTCACGATTACTGAGCATGCTAAGGCCTAGATTGCCCTCTGGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCACGATTACTGAGCATGCTAAGGCCTAGATTGCCCTCTGGTGGC  700

seq1  CATTCAGATTGGTTCAAATTAGAGTGTACTTAGGACAAGCCACAGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGATTGGTTCAAATTAGAGTGTACTTAGGACAAGCCACAGAGAAA  750

seq1  GAAGAGGTGGGAGACAACCCTAATTTGAATAAACTTTGCAACAGGCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGGGAGACAACCCTAATTTGAATAAACTTTGCAACAGGCACCC  800

seq1  CAGGGGTGTCTGGGAGTTGA-TTTTATAC-TTGGCAATGCCCATTTCCCC  848
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CAGGGGTGTCTGGGAGTTGATTTTTATACTTTGGCAATGCCCATTTCCCC  850

seq1  AGCCTGAGTTGGTGTCTTAGAGTTTCA-TTGCTGTGAAGAGACACCATGA  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCTGAGTTGGTGTCTTAGAGTTTCATTTGCTGTGAAGAGACACCATGA  900

seq1  CCAA-GGCAAGTC-TTAT-AAAGGACAACATTT--AATTGT-GGTTGACT  941
      |||| | |||||| |||| ||||||||||||||  | |||| ||||||||
seq2  CCAATGCCAAGTCTTTATAAAAGGACAACATTTTAATTTGTGGGTTGACT  950

seq1  TACT-GGTTCAGAGG-TTCAGT-CCATTATCATCATG  975
      |||| |||||||||| |||||| ||||||||||||||
seq2  TACTGGGTTCAGAGGTTTCAGTCCCATTATCATCATG  987