BAC Information

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BAC

Clone NameB6Ng01-308A14
Chromosome3 (Build37)
Map Location 144,293,739 - 144,444,346
singlet/doubletdoublet
Overlap geneSh3glb1, LOC668890, Clca1
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308A14.bB6Ng01-308A14.g
ACCGA100642GA100643
length9851,058
definitionB6Ng01-308A14.b B6Ng01-308A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,443,383 - 144,444,346)(144,293,739 - 144,294,813)
sequence
gaattctatcaaaccttttttttttaattacaaacaaacaacaaaacaaa
cttcagaacatacttaaaatgcaagctgacatatttatacactgttctta
ttagctgttggcagggctaagacacagatattcagaaatcatggtttagt
ggaattactactgggtgtgactgaacacaatccttaaaatatcttcaggg
ctcacaggtcagaaggtgtagggccttgtggggggaggggcgtaggatgg
actgccaaggcacagcccatgtattcttgagtcgttcagcatcaccacga
agtatttctggacaaatccaattaataacgcagatcaagtgctgaatttc
ttaatagcagatttgtttaaatatacaagaattgctcagtccattttatt
ctgctgtggtattaaactcctgtaagttcaatccaccccattacaatgtc
tttcctatgaatcctttggggatatgtagcctttgattcacagtttgcag
tacaaataccctgatatatcatttatttgctatcaagtattaaattatta
tgcttttaaaattcaatgtctttaaaccaaatttgtaattagcattgctt
ggagcagttcagagcattgtgtttctgtcttcctcctccacctcctcttc
tccctccagactctgatcttggaacaaacttctagggataagaacttagg
ctcttttggcatgcagcatttcaacgagaaggttattatagggcacagct
agtcttctgcctgcttgctgattgcccggatttctggtagtcgaagaagt
agctgttcaaatttctcagtttgttgtgggtagttgcaaacttgtgtagt
ccagcagggtggtgttccacctgctcttggacaactttccaccagctggg
aaatttctcagatttctggacattctcagcttgaacagcactcaggaaac
tttcagacacacaaacttcttcgatggatctgaac
gaattcttttattagttctccaataaatgtcagaaacaagcactctattt
cttctgagcttccttgtgtgtgtgtgtgtgttttttttttttttttacaa
attaaatattttgctctttttcattaaaaagagttgtggacagtcttaaa
agagaaaaagtatttcaggaataaaaatgacctttaaccccactgcccac
gtgtaagtgtcagttgcgttctgatgtacgatgtagttgttactagattc
agagattgtgatacggacagatctagtctacagtgcccaagggaacataa
acacagtcacccaaacaccctctagaactccacgagaccttcagggccct
ctatgatataaggttcttaaggaagttttaagcattcgaaaccatgatgc
aaaaggcactaaaaactagaccatattttaatagcatccgtcataggata
tagatagatcataatttgcagaacattcccctaaaactgctcagggcctg
atttcagagatggccaggagggaaaaggaaaagctgacaatggagtgaat
ctcaaacactcccccgtgaaccgccccaggcttgaacttgaacttgggac
aggtggatgccagcctgccagctctctgattggccttcacatcatcttcc
atcctgtaccacctccatttctgtttcctcaaacacttgactaaattcat
cttcgtgatgaataaagcattcgatcaaaagaaacaatgactcctaatga
acgcctgtggcaccttgctcctcccccctgagttcaggactgtggttgaa
ccctcgatggtttcctgttgaaagaccccggcgggaatcccacctcagga
aggcgcgcacacccagtaggacgctgagaccgatctcgctgtaagtacac
gaggctttaatggcacacaaacacacaacaacaaggagcgctcaagccag
catgctggggtgaaactcatgcaccgcacagggggcagaggagtcgaccc
tgccaactctacagctataagcaaactacaaacaaaggggagccgaaaga
attggcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144443383_144444346
seq2: B6Ng01-308A14.b_46_1021 (reverse)

seq1  CATCGA--GAGTTTGTGTGTCTGAA--GTTCCTG-GTGCTGTTC-AGCTG  44
      ||||||   ||||||||||||||||   |||||| ||||||||| |||||
seq2  CATCGAAGAAGTTTGTGTGTCTGAAAGTTTCCTGAGTGCTGTTCAAGCTG  50

seq1  AG-ATGTCAAGAATCTTGAGAACTT--CCAGCTGGTGG-AAGGTGTCCAA  90
      || ||||| ||||   |||||| ||  ||||||||||| ||| |||||||
seq2  AGAATGTCCAGAAATCTGAGAAATTTCCCAGCTGGTGGAAAGTTGTCCAA  100

seq1  GAGCAGGT-GAACACCACCCTGCTGGACTACAC-AGTTTGCAACTACCCA  138
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GAGCAGGTGGAACACCACCCTGCTGGACTACACAAGTTTGCAACTACCCA  150

seq1  CAACAAACTGAGAAATTTGAACAGCTACTTCTTCGACTACCAGAAATCCG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACTGAGAAATTTGAACAGCTACTTCTTCGACTACCAGAAATCCG  200

seq1  GGCAATCAGCAAGCAGGCAGAAGACTAGCTGTGCCCTATAATAACCTTCT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAGCAAGCAGGCAGAAGACTAGCTGTGCCCTATAATAACCTTCT  250

seq1  CGTTGAAATGCTGCATGCCAAAAGAGCCTAAGTTCTTATCCCTAGAAGTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAAATGCTGCATGCCAAAAGAGCCTAAGTTCTTATCCCTAGAAGTT  300

seq1  TGTTCCAAGATCAGAGTCTGGAGGGAGAAGAGGAGGTGGAGGAGGAAGAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGATCAGAGTCTGGAGGGAGAAGAGGAGGTGGAGGAGGAAGAC  350

seq1  AGAAACACAATGCTCTGAACTGCTCCAAGCAATGCTAATTACAAATTTGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAATGCTCTGAACTGCTCCAAGCAATGCTAATTACAAATTTGG  400

seq1  TTTAAAGACATTGAATTTTAAAAGCATAATAATTTAATACTTGATAGCAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACATTGAATTTTAAAAGCATAATAATTTAATACTTGATAGCAA  450

seq1  ATAAATGATATATCAGGGTATTTGTACTGCAAACTGTGAATCAAAGGCTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATATATCAGGGTATTTGTACTGCAAACTGTGAATCAAAGGCTA  500

seq1  CATATCCCCAAAGGATTCATAGGAAAGACATTGTAATGGGGTGGATTGAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCCAAAGGATTCATAGGAAAGACATTGTAATGGGGTGGATTGAA  550

seq1  CTTACAGGAGTTTAATACCACAGCAGAATAAAATGGACTGAGCAATTCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGAGTTTAATACCACAGCAGAATAAAATGGACTGAGCAATTCTT  600

seq1  GTATATTTAAACAAATCTGCTATTAAGAAATTCAGCACTTGATCTGCGTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTAAACAAATCTGCTATTAAGAAATTCAGCACTTGATCTGCGTT  650

seq1  ATTAATTGGATTTGTCCAGAAATACTTCGTGGTGATGCTGAACGACTCAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGGATTTGTCCAGAAATACTTCGTGGTGATGCTGAACGACTCAA  700

seq1  GAATACATGGGCTGTGCCTTGGCAGTCCATCCTACGCCCCTCCCCCCACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATGGGCTGTGCCTTGGCAGTCCATCCTACGCCCCTCCCCCCACA  750

seq1  AGGCCCTACACCTTCTGACCTGTGAGCCCTGAAGATATTTTAAGGATTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTACACCTTCTGACCTGTGAGCCCTGAAGATATTTTAAGGATTGT  800

seq1  GTTCAGTCACACCCAGTAGTAATTCCACTAAACCATGATTTCTGAATATC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTCACACCCAGTAGTAATTCCACTAAACCATGATTTCTGAATATC  850

seq1  TGTGTCTTAGCCCTGCCAACAGCTAATAAGAACAGTGTATAAATATGTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTAGCCCTGCCAACAGCTAATAAGAACAGTGTATAAATATGTCA  900

seq1  GCTTGCATTTTAAGTATGTTCTGAAGTTTGTTTTGTTGTTTGTTTGTAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATTTTAAGTATGTTCTGAAGTTTGTTTTGTTGTTTGTTTGTAAT  950

seq1  TAAAAAAAAAAGGTTTGATAGAATTC  964
      ||||||||||||||||||||||||||
seq2  TAAAAAAAAAAGGTTTGATAGAATTC  976

seq1: chr3_144293739_144294813
seq2: B6Ng01-308A14.g_68_1125

seq1  GAATTCTTTTATTAGTTCTCCAATAAATGTCAGAAACAAGCACTCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTAGTTCTCCAATAAATGTCAGAAACAAGCACTCTATTT  50

seq1  CTTCTGAGCTTCCTTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCTTCCTTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTACAA  100

seq1  ATTAAATATTTTGCTCTTTTTCATTAAAAAGAGTTGTGGACAGTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTTTGCTCTTTTTCATTAAAAAGAGTTGTGGACAGTCTTAAA  150

seq1  AGAGAAAAAGTATTTCAGGAATAAAAATGACCTTTAACCCCACTGCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAGTATTTCAGGAATAAAAATGACCTTTAACCCCACTGCCCAC  200

seq1  GTGTAAGTGTCAGTTGCGTTCTGATGTACGATGTAGTTGTTACTAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTGTCAGTTGCGTTCTGATGTACGATGTAGTTGTTACTAGATTC  250

seq1  AGAGATTGTGATACGGACAGATCTAGTCTACAGTGCCCAAGGGAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGTGATACGGACAGATCTAGTCTACAGTGCCCAAGGGAACATAA  300

seq1  ACACAGTCACCCAAACACCCTCTAGAACTCCACGAGACCTTCAGGGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCACCCAAACACCCTCTAGAACTCCACGAGACCTTCAGGGCCCT  350

seq1  CTATGATATAAGGTTCTTAAGGAAGTTTTAAGCATTCGAAACCATGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATAAGGTTCTTAAGGAAGTTTTAAGCATTCGAAACCATGATGC  400

seq1  AAAAGGCACTAAAAACTAGACCATATTTTAATAGCATCCGTCATAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCACTAAAAACTAGACCATATTTTAATAGCATCCGTCATAGGATA  450

seq1  TAGATAGATCATAATTTGCAGAACATTCCCCTAAAACTGCTCAGGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATCATAATTTGCAGAACATTCCCCTAAAACTGCTCAGGGCCTG  500

seq1  ATTTCAGAGATGGCCAGGAGGGAAAAGGAAAAGCTGACAATGGAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGATGGCCAGGAGGGAAAAGGAAAAGCTGACAATGGAGTGAAT  550

seq1  CTCAAACACTCCCCCGTGAACCGCCCCAGGCTTGAACTTGAACTTGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACTCCCCCGTGAACCGCCCCAGGCTTGAACTTGAACTTGGGAC  600

seq1  AGGTGGATGCCAGCCTGCCAGCTCTCTGATTGGCCTTCACATCATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATGCCAGCCTGCCAGCTCTCTGATTGGCCTTCACATCATCTTCC  650

seq1  ATCCTGTACCACCTCCATTTCTGTTTCCTCAAACACTTGACTAAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTACCACCTCCATTTCTGTTTCCTCAAACACTTGACTAAATTCAT  700

seq1  CTTCGTGATGAAT-AAGCATTCGATCAAAAGAAACAATGACTCCTAATGA  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGATGAATAAAGCATTCGATCAAAAGAAACAATGACTCCTAATGA  750

seq1  ACGCCTGTGGCACCTTGCTCCTCCCCCCTGAGTTCAGGACTGTGGTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGTGGCACCTTGCTCCTCCCCCCTGAGTTCAGGACTGTGGTTGAA  800

seq1  CCCTCGATGGTTTCCTGTTGAAAGACCCCGGCGGGAATCCCACCTCAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGATGGTTTCCTGTTGAAAGACCCCGGCGGGAATCCCACCTCAGGA  850

seq1  AGGCGCGCACACCCAGTAGGACGCTGAGACCGATCTCGCTGTAAGTACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCGCACACCCAGTAGGACGCTGAGACCGATCTCGCTGTAAGTACAC  900

seq1  GAGGCTTTAATGGCACACAAACACACAAACAACAAAGGAGCGCTCAAGCC  949
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  GAGGCTTTAATGGCACACAAACACAC-AACAAC-AAGGAGCGCTCAAGCC  948

seq1  AGCATGCTGGGGTGAAACTCATGCACCGCACAGGGGGCAGAGGAGTTCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCATGCTGGGGTGAAACTCATGCACCGCACAGGGGGCAGAGGAG-TCGA  997

seq1  CCCCTGCCCAAACTTCTTACAGGCTTATAAAGGCAAAAACCACAAACCAA  1049
       |||||||  ||||   |||||   |||||  ||  |||| |||||| ||
seq2  -CCCTGCC--AACT--CTACAG--CTATAA--GC--AAACTACAAACAAA  1036

seq1  AAGGGGGGAGCCGAAAGAATTTGCGG  1075
          ||||||||||||||||| ||||
seq2  ----GGGGAGCCGAAAGAATTGGCGG  1058