BAC Information

Click to search

BAC

Clone NameB6Ng01-308J05
Chromosome3 (Build37)
Map Location 3,939,348 - 3,940,533
singlet/doubletsinglet
Overlap geneLOC100039167
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157
Downstream geneLOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308J05.bB6Ng01-308J05.g
ACCGA101039GA101040
length1,1881,182
definitionB6Ng01-308J05.b B6Ng01-308J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttaggtcagcagcgaattataggaactaggaactgatagacg
gttgtccgcagcttttaaaagctgtctcaggcgagaagaaaagggtttaa
aaagaacatgaatcaggcgattgtccacagttttcacaagttgcttcagg
caagaggagtagagcttgaagtacaattgttagaaaaaattttagatagg
atagattcttgttgcccatggttcaaagaagaagaaactttagatatcag
aacctaggagaaaattggaaaagccttgaaaatcactccggcagataatt
tcactctttgcctctgggcactcataaaagatgctattggaaaggtgatc
tcgtaggggtcagatagtacccaggcagagcttgatgaatctcaggaaga
gcgaagagcgcctgtcagagagggtcttctcagaaaagggtcctctctac
tctaaatttgatagatatagagactctgatgttgagcttcttttagacaa
agattactcagaaagagaagtgccaaatattttgagaaggattggcctcc
ttccaagtctcccgctccaactatagcctccaccttgggagatgctactc
atagggacatgtaactaagcaaattagcgtttgaagttaggctgcagaaa
ttgactaatgagttttggaagctaaaaatgatgtcagatacaagaaggag
taactcttctgaaatgtaccaagcgttgctagtaaaagctgtgagtcagg
cttgtgggagaggacaggatacatctgatgtgctagcctttcctgtcttt
aaggtaatcaaccagcaagatactagagtcagacaataccagactttgga
tttcaagttgataaaggagttaaaaacagctgttgtgcaatatggtcctt
cagcccctttaacacaagcattactggataccggtcgtggagtcacactt
aaacccccctagattggaagactctatgtaaggctaccttgtcaggagat
ttcttgctttgggattctgatggtgaaataccagtaagaaagccgctgct
tcgatgctcagactggtatctagactggtatagtacatgcctgtgggaga
aaagttcattgaggtcagcctaatcagaattgttcgattgaggtacatgc
agaatggcagaaatgttggtggggaaccttatagtcct

gaattcactcaggtttctctttgaaggtcagagaattgctgataatctta
ctctgaaagaactgggaatggagaaagaagatgtgattaatgtttatcag
gaacaaatgggtgggtcactcgatggtttagataattccttttatttttt
ccttttccctcaatccttttgtattttttaaaatagttcttttgcaatgt
ggtattcaaaatgaaaattgaatactggcactccttctcttagaacatcc
gaattctagtattcatattcatcattggttgtttttgttgtgctgatttt
tggtgatcagacctctgctcccttaatactgccctttttcctttaagaaa
ttttatgtgtgcacagaggggccacccttttcaggactgtgcattttcag
gtttgtgatgataaaaagatcgaccaatggaagcttccctgtgacctttc
aattagccctgaacttccagcatgtggttgcttcactcctggactgtgat
tttgagtgggaaatggatatttttcagagaactgaactgtggaaaatgac
ctttcctcagcttgaagctacttttaaaatatgagggtctggaccaaaag
aagaacattatgtttgtagtcaagatggcagatacagtgagagcaacagc
taactccaaaggtggtttcactgaagagaaagaaagtgtcttgagcaaga
cagtattgtccaaagatcccaggagagttctaattttcatcagcagttat
taataacattacttatatagaagtgtacataatagacactgctccttttg
attttttttttgtattttttggcctggggacatgggttttcaagggacat
cgtttgtaccagcttcattaacaaggccacacctcctaatattgcctctc
ctcaagccaagcagatacaaaccatcacagtctacttttctaaaacttca
tagatagtagattctcaagatatatcccacttccacttcttggtagtaca
tgtactagtctacaaataaattcattaaagctagtttcttagggtcagtc
tagtcagtaaatatgacgctagctgaaattattgcattccattcgaagaa
attgatggtagaaaagattggaccaactatccacacaggttcctgtgact
tcatattgtgctagagcaagccactcacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3939348_3940533
seq2: B6Ng01-308J05.g_67_1248

seq1  GAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCTTA  50

seq1  CTCTGAAAGAACTGGGAATGGAGAAAGAAGATGTGATTAATGTTTATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGAACTGGGAATGGAGAAAGAAGATGTGATTAATGTTTATCAG  100

seq1  GAACAAATGGGTGGGTCACTCGATGGTTTAGATAATTCCTTTTATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATGGGTGGGTCACTCGATGGTTTAGATAATTCCTTTTATTTTTT  150

seq1  CCTTTTCCCTCAATCCTTTTGTATTTTTTAAAATAGTTCTTTTGCAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCCTCAATCCTTTTGTATTTTTTAAAATAGTTCTTTTGCAATGT  200

seq1  GGTATTCAAAATGAAAATTGAATACTGGCACTCCTTCTCTTAGAACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAAAATGAAAATTGAATACTGGCACTCCTTCTCTTAGAACATCC  250

seq1  GAATTCTAGTATTCATATTCATCATTGGTTGTTTTTGTTGTGCTGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTATTCATATTCATCATTGGTTGTTTTTGTTGTGCTGATTTT  300

seq1  TGGTGATCAGACCTCTGCTCCCTTAATACTGCCCTTTTTCCTTTAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCAGACCTCTGCTCCCTTAATACTGCCCTTTTTCCTTTAAGAAA  350

seq1  TTTTATGTGTGCACAGAGGGGCCACCCTTTTCAGGACTGTGCATTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGTGCACAGAGGGGCCACCCTTTTCAGGACTGTGCATTTTCAG  400

seq1  GTTTGTGATGATAAAAAGATCGACCAATGGAAGCTTCCCTGTGACCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGATGATAAAAAGATCGACCAATGGAAGCTTCCCTGTGACCTTTC  450

seq1  AATTAGCCCTGAACTTCCAGCATGTGGTTGCTTCACTCCTGGACTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCCTGAACTTCCAGCATGTGGTTGCTTCACTCCTGGACTGTGAT  500

seq1  TTTGAGTGGGAAATGGATATTTTTCAGAGAACTGAACTGTGGAAAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGGGAAATGGATATTTTTCAGAGAACTGAACTGTGGAAAATGAC  550

seq1  CTTTCCTCAGCTTGAAGCTACTTTTAAAATATGAGGGTCTGGACCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCAGCTTGAAGCTACTTTTAAAATATGAGGGTCTGGACCAAAAG  600

seq1  AAGAACATTATGTTTGTAGTCAAGATGGCAGATACAGTGAGAGCAACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTATGTTTGTAGTCAAGATGGCAGATACAGTGAGAGCAACAGC  650

seq1  TAACTCCAAAGGTGGTTTCACTGAAGAGAAAGAAAGTGTCTTGAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAAAGGTGGTTTCACTGAAGAGAAAGAAAGTGTCTTGAGCAAGA  700

seq1  CAGTATTGTCCAAAGATCCCAGGAGAGTTCTAATTTTCATCAGCAGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTCCAAAGATCCCAGGAGAGTTCTAATTTTCATCAGCAGTTAT  750

seq1  TAATAACATTACTTATATAGAAGTGTACATAATAGACACTGCTCCTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATTACTTATATAGAAGTGTACATAATAGACACTGCTCCTTTTG  800

seq1  A-TTTTTTTTTGTATTTTTTGGCCT-GGGACATGGGTTTTCAAGGGACAT  848
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTTTTTTTTGTATTTTTTGGCCTGGGGACATGGGTTTTCAAGGGACAT  850

seq1  CGTTTGTACCAGCTTCATTAACAAGGCCACACCTCCTAATATTGCCTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTACCAGCTTCATTAACAAGGCCACACCTCCTAATATTGCCTCTC  900

seq1  CTCAAGCCAAGCAGATACAAACCATCACAGTCTACTTTTCTAAAAACTTC  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAAGCCAAGCAGATACAAACCATCACAGTCTACTTTTCT-AAAACTTC  949

seq1  ATAGATAGTAGATTCTCAGGATTATATCCCACTTCCACTTCTTGGTAGTA  998
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  ATAGATAGTAGATTCTCAAGA-TATATCCCACTTCCACTTCTTGGTAGTA  998

seq1  CATGTACTTAGTCTACAAATAAATTTCATTAAAGCTAGTTTCTTAAGGGT  1048
      ||||||| ||||||||||||||| |||||||||||||||||||| |||||
seq2  CATGTAC-TAGTCTACAAATAAA-TTCATTAAAGCTAGTTTCTT-AGGGT  1045

seq1  CAGGTCTAGGTCAGGTAAATATGACCGGCCTAGCCTGATA-TATTGCATT  1097
      || ||||| |||| |||||||||||    |||| |||| | |||||||||
seq2  CA-GTCTA-GTCA-GTAAATATGAC---GCTAG-CTGAAATTATTGCATT  1088

seq1  TCATCCAAAGAAAATGATTGTAG-AAAGATTGAACCAACTAT-CACACAG  1145
       ||| | |||||| |||| |||| |||||||| ||||||||| |||||||
seq2  CCATTCGAAGAAATTGATGGTAGAAAAGATTGGACCAACTATCCACACAG  1138

seq1  TGTCCTGTGACCTTCATA-TGTGCTAGAGCAAG---CACACATCT  1186
        |||||||| ||||||| ||||||||||||||   | |||||||
seq2  GTTCCTGTGA-CTTCATATTGTGCTAGAGCAAGCCACTCACATCT  1182


| Home | SequenceCutter | Blast | Download |