BAC Information

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BAC

Clone NameB6Ng01-309C14
Chromosome3 (Build37)
Map Location 32,490,723 - 32,624,110
singlet/doubletdoublet
Overlap geneGnb4, LOC100040977, Actl6a
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1
Downstream geneMrpl47, Ndufb5, Usp13, Pex2, EG545512, LOC100041058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C14.bB6Ng01-309C14.g
ACCGA101472GA101473
length1,1041,083
definitionB6Ng01-309C14.b B6Ng01-309C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,490,723 - 32,491,803)(32,623,029 - 32,624,110)
sequence
gaattcacttacgtagaccatgctgaactcaacaagatctgcctgccttt
gcctactaaattagatgtaaagtacgaatccgtatcttagcacattaatg
tttaatgttcaaaagaggagtctcctacacctgaacactgaaccataaaa
aggaatggacagagaagtatcagagacaatcggaagggggcttgtgtgtg
tgcccttgtagtaacgggcacacatgccaggatctcaaagagggaacaca
atggtgtcatcaaacctagaagcaggaggagcaggacaacagaaggtgtt
tgatttatcaaggatgcccccatccagagtgtccacccatcctgtgatac
taccatgcttcctcttgacctaaagtgatatcataaagtatatttgtttt
ttttttgtttgtttgtttgttttaggaaaatggatttgaatgagactagc
gtaataccaattaggatacaaaacctgttacatcacacgtagttactttt
caagtctcaatcaggctgagtgtgcagctcgtgcacaggccaggtcctta
gtctaagctcagcgcttcagggtgagagggcttaagtgactgttcatttc
accaaacactgtttttggctgctcagtcaattactgctataacgtatgca
tctgacttgtaaaatatatcccccaaattttcaatgttactcagcaactt
gaatcaagaactcaaggattctttactctgggtacagtaagaaaatcaag
attttcactactagatctcaacaaatttaatgtgtctatttttttttaag
tcatctagaaaaacaacttttccttggagtagcccaaggaaaaaactttc
cagaagccatctaccacaataactgttaataacatcactgttgtttcatt
ccaggaattgggactttgaaaagttcttgtctatataaaaagtggcagtc
ttcaaaagccagggtggtgggtggttgcatgtctgtaaactcagccagtg
gtgaaaggtaagagggcaggagaactcaagagctggagggcctagccttc
agcttacatcgtggagcctcaagggttaggcctggggctaaaataaggag
cctg
gaattcagtgctgaaaaacctctagaggcatggtggaacatgtacttaat
cctagcacttgggatacagagacaggcagatctcttagttccaggccagt
atggcctacatagtgagtttgaggtcaaataggactacaacagcatccaa
cactcacacccactcaccctgtctgtctctacacacacggaaaaacaaat
tagtttcacatggtgtcaaatggctaagctaatagttggcataggctagg
ctacttttcaggaaaggtcttaatgaatatcgggtaagaaaatgaactat
gtgactcaagagactgggcaaacacaagcatgcaacaccacaccaggtag
gaagacacactggactggaaatactgaaacccatgctctaacttttgctg
tcaggaaacttgttcaatttcctcaacatgacactcccctgagagctttc
attctgcagcactaaagacattacagagcttgcagtctcctcccttgaac
agctctattaaatatattttatgatgttcttttaatcacgaacactgtta
ctctgtaatctcatttagagttgtaagacaggatttatatatgtacataa
tttcttcctgttaaacataaattaacaaagcaacaaaaccaaaactgtaa
aacctgcgtaggacaaggccagcccttacagttcatgcacctccaaaggc
cccaggtgcttcattcctcttcttcgaagtctcccacccaccaccctacc
ccagagatcctgctaccgaaactcttcccaatcaaaatgccagaccacaa
gtgacttgattcacgctcatgtctgcaaccccagcacccgggctgaaagg
ggcagaatgctgagtaaatcagcctggtctacatgggacaacaacatatg
ccccatctcaaaaaactaaaaccttagtgcctctgttctgaacgtagtat
atcgcccaggccagccttaaacttgggatcttcctgcctcagcccttgca
gtagctgggataacaaggtttgtatcactggtcgggggtcaaatgatgta
ttcatcactttctttaagggttcttttcctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32490723_32491803
seq2: B6Ng01-309C14.b_49_1152

seq1  GAATTCACTTACGTAGACCATGCTGAACTCAACAAGATCTGCCTGCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACGTAGACCATGCTGAACTCAACAAGATCTGCCTGCCTTT  50

seq1  GCCTACTAAATTAGATGTAAAGTACGAATCCGTATCTTAGCACATTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTAAATTAGATGTAAAGTACGAATCCGTATCTTAGCACATTAATG  100

seq1  TTTAATGTTCAAAAGAGGAGTCTCCTACACCTGAACACTGAACCATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTCAAAAGAGGAGTCTCCTACACCTGAACACTGAACCATAAAA  150

seq1  AGGAATGGACAGAGAAGTATCAGAGACAATCGGAAGGGGGCTTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGACAGAGAAGTATCAGAGACAATCGGAAGGGGGCTTGTGTGTG  200

seq1  TGCCCTTGTAGTAACGGGCACACATGCCAGGATCTCAAAGAGGGAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGTAGTAACGGGCACACATGCCAGGATCTCAAAGAGGGAACACA  250

seq1  ATGGTGTCATCAAACCTAGAAGCAGGAGGAGCAGGACAACAGAAGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCATCAAACCTAGAAGCAGGAGGAGCAGGACAACAGAAGGTGTT  300

seq1  TGATTTATCAAGGATGCCCCCATCCAGAGTGTCCACCCATCCTGTGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCAAGGATGCCCCCATCCAGAGTGTCCACCCATCCTGTGATAC  350

seq1  TACCATGCTTCCTCTTGACCTAAAGTGATATCATAAAGTATATTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCTTCCTCTTGACCTAAAGTGATATCATAAAGTATATTTGTTTT  400

seq1  TTTTTTGTTTGTTTGTTTGTTTTAGGAAAATGGATTTGAATGAGACTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTGTTTTAGGAAAATGGATTTGAATGAGACTAGC  450

seq1  GTAATACCAATTAGGATACAAAACCTGTTACATCACACGTAGTTACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCAATTAGGATACAAAACCTGTTACATCACACGTAGTTACTTTT  500

seq1  CAAGTCTCAATCAGGCTGAGTGTGCAGCTCGTGCACAGGCCAGGTCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCAATCAGGCTGAGTGTGCAGCTCGTGCACAGGCCAGGTCCTTA  550

seq1  GTCTAAGCTCAGCGCTTCAGGGTGAGAGGGCTTAAGTGACTGTTCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGCTCAGCGCTTCAGGGTGAGAGGGCTTAAGTGACTGTTCATTTC  600

seq1  ACCAAACACTGTTTTTGGCTGCTCAGTCAATTACTGCTATAACGTATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACACTGTTTTTGGCTGCTCAGTCAATTACTGCTATAACGTATGCA  650

seq1  TCTGACTTGTAAAATATATCCCCCAAATTTTCAATGTTACTCAGCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTGTAAAATATATCCCCCAAATTTTCAATGTTACTCAGCAACTT  700

seq1  GAATCAAGAACTCAAGGATTCTTTACTCTGGGTACAGTAAGAAAATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGAACTCAAGGATTCTTTACTCTGGGTACAGTAAGAAAATCAAG  750

seq1  ATTTTCACTACTAGATCTCAACAAATTTAATGTGTCTA-TTTTTTTTAAG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTTTCACTACTAGATCTCAACAAATTTAATGTGTCTATTTTTTTTTAAG  800

seq1  TCATCTAGAAAAACAACTTTTCCTTGGAGTAAGCCAAGG-AAAAACTTTC  848
      |||||||||||||||||||||||||||||||  |||||| ||||||||||
seq2  TCATCTAGAAAAACAACTTTTCCTTGGAGTAGCCCAAGGAAAAAACTTTC  850

seq1  CAGAAGCCATCTACCACAATAACTGTTAATAACATCACTGTTGTTTCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCATCTACCACAATAACTGTTAATAACATCACTGTTGTTTCATT  900

seq1  CCAGGAATTGGGACTTTGAAAAGTTCTTGTCTATATAAAAAGTGGCAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATTGGGACTTTGAAAAGTTCTTGTCTATATAAAAAGTGGCAGTC  950

seq1  TTCAAAAGCCAGGTGTGGT-----GTTGCATGTCTGTAAACTCAG-CAGT  992
      ||||||||||||| |||||     ||||||||||||||||||||| ||||
seq2  TTCAAAAGCCAGG-GTGGTGGGTGGTTGCATGTCTGTAAACTCAGCCAGT  999

seq1  -GTG-AAGGT-AGA-GGCAGGAGAAC-CAAGAGCT-GAGGG-CTAGCC-T  1034
       ||| ||||| ||| ||||||||||| |||||||| ||||| |||||| |
seq2  GGTGAAAGGTAAGAGGGCAGGAGAACTCAAGAGCTGGAGGGCCTAGCCTT  1049

seq1  CAGC-TACATCGT-GAG-CTCAA-GGTTA-GCCT-GGGCT-AAATAA-GA  1076
      |||| |||||||| ||| ||||| ||||| |||| ||||| |||||| ||
seq2  CAGCTTACATCGTGGAGCCTCAAGGGTTAGGCCTGGGGCTAAAATAAGGA  1099

seq1  GCCTG  1081
      |||||
seq2  GCCTG  1104

seq1: chr3_32623029_32624110
seq2: B6Ng01-309C14.g_68_1150 (reverse)

seq1  GAAAGGAAAAGA--CCCTAAAGAAAGTGAATTGAATACATCA-TTGACCC  47
      ||||||||||||  || ||||||||||||  ||||||||||| |||||||
seq2  GAAAGGAAAAGAACCCTTAAAGAAAGTGA--TGAATACATCATTTGACCC  48

seq1  CCGGCCAGGTGATACAAACC-TGTTATCCCAGCTACTGCAA-GGCTGAGG  95
      ||| ||| |||||||||||| |||||||||||||||||||| ||||||||
seq2  CCGACCA-GTGATACAAACCTTGTTATCCCAGCTACTGCAAGGGCTGAGG  97

seq1  CAGGAAGATCCCAAGTTTAAGGCTGGCCTGGGCGATATACTACGTTCAGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATCCCAAGTTTAAGGCTGGCCTGGGCGATATACTACGTTCAGA  147

seq1  ACAGAGGCACTAAGGTTTTAGTTTTTTGAGATGGGGCATATGTTGTTGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCACTAAGGTTTTAGTTTTTTGAGATGGGGCATATGTTGTTGTC  197

seq1  CCATTGTAGACCAGGCTGATTTACTCAGCATTCTGCCCCCTTCAGCCCGG  245
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCA-TGTAGACCAGGCTGATTTACTCAGCATTCTGCCCCTTTCAGCCCGG  246

seq1  GTGCTGGGGTTGCAGACATGAGCGTGAATCAAGTCACTTGTGGTCTGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGTTGCAGACATGAGCGTGAATCAAGTCACTTGTGGTCTGGCA  296

seq1  TTTTGATTGGGAAGAGTTTCGGTAGCAGGATCTCTGGGGTAGGGTGGTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTGGGAAGAGTTTCGGTAGCAGGATCTCTGGGGTAGGGTGGTGG  346

seq1  GTGGGAGACTTCGAAGAAGAGGAATGAAGCACCTGGGGCCTTTGGAGGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGACTTCGAAGAAGAGGAATGAAGCACCTGGGGCCTTTGGAGGTG  396

seq1  CATGAACTGTAAGGGCTGGCCTTGTCCTACGCAGGTTTTACAGTTTTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTGTAAGGGCTGGCCTTGTCCTACGCAGGTTTTACAGTTTTGGT  446

seq1  TTTGTTGCTTTGTTAATTTATGTTTAACAGGAAGAAATTATGTACATATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTTTGTTAATTTATGTTTAACAGGAAGAAATTATGTACATATA  496

seq1  TAAATCCTGTCTTACAACTCTAAATGAGATTACAGAGTAACAGTGTTCGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTGTCTTACAACTCTAAATGAGATTACAGAGTAACAGTGTTCGT  546

seq1  GATTAAAAGAACATCATAAAATATATTTAATAGAGCTGTTCAAGGGAGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAGAACATCATAAAATATATTTAATAGAGCTGTTCAAGGGAGGA  596

seq1  GACTGCAAGCTCTGTAATGTCTTTAGTGCTGCAGAATGAAAGCTCTCAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAAGCTCTGTAATGTCTTTAGTGCTGCAGAATGAAAGCTCTCAGG  646

seq1  GGAGTGTCATGTTGAGGAAATTGAACAAGTTTCCTGACAGCAAAAGTTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCATGTTGAGGAAATTGAACAAGTTTCCTGACAGCAAAAGTTAG  696

seq1  AGCATGGGTTTCAGTATTTCCAGTCCAGTGTGTCTTCCTACCTGGTGTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGTTTCAGTATTTCCAGTCCAGTGTGTCTTCCTACCTGGTGTGG  746

seq1  TGTTGCATGCTTGTGTTTGCCCAGTCTCTTGAGTCACATAGTTCATTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATGCTTGTGTTTGCCCAGTCTCTTGAGTCACATAGTTCATTTTC  796

seq1  TTACCCGATATTCATTAAGACCTTTCCTGAAAAGTAGCCTAGCCTATGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGATATTCATTAAGACCTTTCCTGAAAAGTAGCCTAGCCTATGCC  846

seq1  AACTATTAGCTTAGCCATTTGACACCATGTGAAACTAATTTGTTTTTCCG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAGCTTAGCCATTTGACACCATGTGAAACTAATTTGTTTTTCCG  896

seq1  TGTGTGTAGAGACAGACAGGGTGAGTGGGTGTGAGTGTTGGATGCTGTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGAGACAGACAGGGTGAGTGGGTGTGAGTGTTGGATGCTGTTG  946

seq1  TAGTCCTATTTGACCTCAAACTCACTATGTAGGCCATACTGGCCTGGAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTATTTGACCTCAAACTCACTATGTAGGCCATACTGGCCTGGAAC  996

seq1  TAAGAGATCTGCCTGTCTCTGTATCCCAAGTGCTAGGATTAAGTACATGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATCTGCCTGTCTCTGTATCCCAAGTGCTAGGATTAAGTACATGT  1046

seq1  TCCACCATGCCTCTAGAGGTTTTTCAGCACTGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGCCTCTAGAGGTTTTTCAGCACTGAATTC  1083