BAC Information

Click to search

BAC

Clone NameB6Ng01-309M10
Chromosome3 (Build37)
Map Location 78,021,315 - 78,146,416
singlet/doubletdoublet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309M10.bB6Ng01-309M10.g
ACCGA101932GA101933
length1,120365
definitionB6Ng01-309M10.b B6Ng01-309M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,021,315 - 78,022,444)(78,146,046 - 78,146,416)
sequence
gaattctcttccttaagaatctgatgcttccttcctcacctttctgagag
tctttttttgttgttgttgttgtttctcttcattgtttttccatttttta
ttaggtatttagctcatttacatttccaatgctataccaaaagtccccca
taccctcccccccacttccctacccacccactccccctttttggccctgg
cgttcccctgtactggggcatataaagtttgcaaatccaatgggcctctc
tttccagtgatggccaactaggccatcttttgatacatatgcagctagag
tcaagagctccggggtactggtagttcatattgttgttccacctataggg
ttgcagatccctttagctccttgggtactttctctagctcctccattagg
agccctgtgatccatggaaggagttacagagacaaagtttggagctgaga
gtctttatgcaactattcacttactgaaaaccatccctgacagctcccca
tagggcaacaccacatgctacctgaactctatgtccttgcctgtgttatt
ttatagctctttaattctggcttaccaagaagtttattttctctgaccac
caatgggcatcacaccacttcactgaggaaagtgattgatagggtttctg
ctatttattgcgtcacaaataccaatttcaggattttagaactctttcaa
taactacacataaaatcatgagtatgtcaacatggtcaaatgtcaggatg
ctgacttggatataagaggtggaagaaagttctgccatcacacagctgcc
aatgaagtgagaaggaaccagtcatctaccttgtgttcacagcactggaa
ctgattctctggtgccacctcaaattctataaaccaaactgggtgatgaa
aatgtccataataaagttttcattttaaaagaaatccactggaataagct
gattatattttttaaatcacttctctttagtttggaagtcagatggctct
tttgcataatttatgctccatagctgagcacagtaaggttaaattattta
ctgaagctcaatgaagtctaatgatttaacaacatatgtaggtttctaca
tctgatcctccattggaaat

cataattccatttgtgtttcttgctagataaaattccactgtgcataggc
atcaactgtttattatccactgatgtgtcgataaacatttgggctgattg
cagttttactgacattcattaattgtgcatgttaatgggagtttctgtga
tatttaatgcaagaatagagcatgcagtagtcatatctgcttctggttct
ttttttgcaaatgttgagtctgaatttcacagaagtagtaattttccctt
tcttttctttccttttctttcctttttttcctttcctttcctttcctttc
ctttcctttcctttcctttcctttcctttcctttcctttcctctcctctc
ctctcctctccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78021315_78022444
seq2: B6Ng01-309M10.b_46_1165

seq1  GAATTCTCTTCCTTAAGAATCTGATGCTTCCTTCCTCACCTTTCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTAAGAATCTGATGCTTCCTTCCTCACCTTTCTGAGAG  50

seq1  TCTTTTTTTGTTGTTGTTGTTGTTTCTCTTCATTGTTTTTCCATTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGTTGTTGTTGTTGTTTCTCTTCATTGTTTTTCCATTTTTTA  100

seq1  TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  150

seq1  TACCCTCCCCCCCACTTCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCCCCCCACTTCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG  200

seq1  CGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAATGGGCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAATCCAATGGGCCTCTC  250

seq1  TTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAG  300

seq1  TCAAGAGCTCCGGGGTACTGGTAGTTCATATTGTTGTTCCACCTATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCTCCGGGGTACTGGTAGTTCATATTGTTGTTCCACCTATAGGG  350

seq1  TTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTAGG  400

seq1  AGCCCTGTGATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGA  450

seq1  GTCTTTATGCAACTATTCACTTACTGAAAACCATCCCTGACAGCTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATGCAACTATTCACTTACTGAAAACCATCCCTGACAGCTCCCCA  500

seq1  TAGGGCAACACCACATGCTACCTGAACTCTATGTCCTTGCCTGTGTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAACACCACATGCTACCTGAACTCTATGTCCTTGCCTGTGTTATT  550

seq1  TTATAGCTCTTTAATTCTGGCTTACCAAGAAGTTTATTTTCTCTGACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTCTTTAATTCTGGCTTACCAAGAAGTTTATTTTCTCTGACCAC  600

seq1  CAATGGGCATCACACCACTTCACTGAGGAAAGTGATTGATAGGGTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCATCACACCACTTCACTGAGGAAAGTGATTGATAGGGTTTCTG  650

seq1  CTATTTATTGCGTCACAAATACCAATTTCAGGATTTTAGAACTCTTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTGCGTCACAAATACCAATTTCAGGATTTTAGAACTCTTTCAA  700

seq1  TAACTACACATAAAATCATGAGTATGTCAACATGGTCAAATGTCAGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACACATAAAATCATGAGTATGTCAACATGGTCAAATGTCAGGATG  750

seq1  CTGACTTGGATATAAGAGGTGGAAGAAAGTTCTGCCATCACACAGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGGATATAAGAGGTGGAAGAAAGTTCTGCCATCACACAGCTGCC  800

seq1  AATGAAGTGAGAAGGAACCAGTCATCTACCTTGTGTTCACAGCACTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTGAGAAGGAACCAGTCATCTACCTTGTGTTCACAGCACTGGAA  850

seq1  CTGATTCTCTGGTGCCACCTCAAATTCTATAAACCAAACTGGGTGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCTGGTGCCACCTCAAATTCTATAAACCAAACTGGGTGATGAA  900

seq1  AATGTCCATAATAAAGTTTTCATTTTAAAAGAAATCCACTGG-ATAAGCT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGTCCATAATAAAGTTTTCATTTTAAAAGAAATCCACTGGAATAAGCT  950

seq1  GATTATA-TTTTTAAATCACTTTCTCTTTAGGTTTGGAAGGTCAGGATGG  998
      ||||||| |||||||||||| ||||||||| |||||||| |||| |||||
seq2  GATTATATTTTTTAAATCAC-TTCTCTTTA-GTTTGGAA-GTCA-GATGG  996

seq1  CTCTTTTGCATAAATTTATGCTTCCATAAGCTGAGGCACAGTAAGGTTAA  1048
      ||||||||||| ||||||||| ||||| |||||| |||||||||||||||
seq2  CTCTTTTGCAT-AATTTATGC-TCCAT-AGCTGA-GCACAGTAAGGTTAA  1042

seq1  ATATTTTACCTGAAAGCTCAATGAAAGTCT-ATGATTAAACCAACATAAT  1097
      ||  |||| ||| |||||||||| |||||| |||||| || |||||| ||
seq2  ATTATTTA-CTG-AAGCTCAATG-AAGTCTAATGATTTAA-CAACAT-AT  1087

seq1  GTA-GTTTCTACATTCTGAATCTCCATTTGAAAT  1130
      ||| ||||||||| |||||  ||||||| |||||
seq2  GTAGGTTTCTACA-TCTGATCCTCCATTGGAAAT  1120


seq1: chr3_78146046_78146416
seq2: B6Ng01-309M10.g_66_436 (reverse)

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAAAGGAAAGGAAAGGAAAGGAAAG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGAGGAGAGGAGAGGAGAGGAAAGGAAAGGAAAGGAAAGGAAAG  50

seq1  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAAAAAGGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAAAAAGGAAAGA  100

seq1  AAAGGAAAGAAAAGAAAGGGAAAATTACTACTTCTGTGAAATTCAGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGAAAAGAAAGGGAAAATTACTACTTCTGTGAAATTCAGACTC  150

seq1  AACATTTGCAAAAAAAGAACCAGAAGCAGATATGACTACTGCATGCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCAAAAAAAGAACCAGAAGCAGATATGACTACTGCATGCTCTA  200

seq1  TTCTTGCATTAAATATCACAGAAACTCCCATTAACATGCACAATTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATTAAATATCACAGAAACTCCCATTAACATGCACAATTAATGA  250

seq1  ATGTCAGTAAAACTGCAATCAGCCCAAATGTTTATCGACACATCAGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTAAAACTGCAATCAGCCCAAATGTTTATCGACACATCAGTGGA  300

seq1  TAATAAACAGTTGATGCCTATGCACAGTGGAATTTTATCTAGCAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACAGTTGATGCCTATGCACAGTGGAATTTTATCTAGCAAGAAAC  350

seq1  ACAAATGGAATTATGGAATTC  371
      |||||||||||||||||||||
seq2  ACAAATGGAATTATGGAATTC  371


| Home | SequenceCutter | Blast | Download |