BAC Information

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BAC

Clone NameB6Ng01-309N02
Chromosome3 (Build37)
Map Location 132,419,676 - 132,599,021
singlet/doubletdoublet
Overlap geneA630047E20Rik, LOC668858, Npnt
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309N02.bB6Ng01-309N02.g
ACCGA101964GA101965
length4721,021
definitionB6Ng01-309N02.b B6Ng01-309N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,598,544 - 132,599,021)(132,419,676 - 132,420,700)
sequence
cataaatgataaaaggtatttgttgctaaactgacagtaattgtcccatg
cataatttttttcttttacttaattgaaaaactttttatataatatattg
tgatcatgttttttcttcccccaattactcccgatccttcctacctaccc
acccaactttatgttcttttatgttttcttttataaaaattaacatttat
ttttattatatacatataatatacattcacatgtatgattgttttgcata
cacatatgactaggcaacatgcccatgacttgtgttcatgtaagctagaa
ggggccatcagatcacctggaactggaatagcagaaggttgtgagctgtc
atgtaggtgctgggaatcaaacctgggtcctctagaagaacagccagtgc
tcttaatcgattagccatctttccagcctcagtttttaatttttaaaagt
atgtatgggggtggggagagac

gaattcattgttagaaattacctttaaaattaagccttcagggctattgt
tttgtatgactaggaaaaacatgtttttcttgcttcacgatagtttttat
agaggccagcacccacaggcttagaagtcaaggcacacatgagttccagt
cgagtttcaccatgctcggcctgtgtgaactgagaaacctgtagtgtgat
gctgctgctgcaaaagcctgctctgcaaagggagagtagccatgtacaca
gcacagcacttcagccacgtgggctgccccatttatgtcagcttggcctg
agctagattcatcagagaggtgggaggctcaatggagaatcgcctctcta
agaccaggctgtgggcaggcctggaaggcatttttggtgattgaggtaga
gggtccagcccattgtgggtgggccgcttctgggattgtagtccagggtt
ctacaagaaagcagactaatcaagttcaagacatgggaagtaagccagta
agaggcatgcctccatggtctctgcatgagcttctgcctcaggtttctcc
caatgtttgagtatctgtcctgacttcctttgataatgaacagtaaagtg
acagtatcacgtctcacactgttgtgttgactactaaaataatatgcaaa
atgcagccggcataaaaactcataaagggaaatatgcccaacgtcttttt
tttacacttttaaaaaactttattagttattttatttattgacatttcag
atataattccttcctggtttcacctcacaaacccccatctcctcctcttc
ccctctgcttctagaggtattccctcacccacccactcccacctcactat
cctagcattcccctacactggggcatcgaaccttcacaggaccaagggaa
ctcccctccactgatgtccaacagatatcttctgctaaatatgcggcttg
gagacatggtcctccatgtgtactctttggttggttgattagtccctggg
agctctggggaatggggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132598544_132599021
seq2: B6Ng01-309N02.b_48_525 (reverse)

seq1  GTCTCTCCCCACCCCCATACATACTTTTAAAAATTAAAAACTGAGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCCACCCCCATACATACTTTTAAAAATTAAAAACTGAGGCTGG  50

seq1  AAAGATGGCTAATCGATTAAGAGCACTGGCTGTTCTTCTAGAGGACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTAATCGATTAAGAGCACTGGCTGTTCTTCTAGAGGACCCAG  100

seq1  GTTTGATTCCCAGCACCTACATGACAGCTCACAACCTTCTGCTATTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCCAGCACCTACATGACAGCTCACAACCTTCTGCTATTCCAG  150

seq1  TTCCAGGTGATCTGATGGCCCCTTCTAGCTTACATGAACACAAGTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGATCTGATGGCCCCTTCTAGCTTACATGAACACAAGTCATGG  200

seq1  GCATGTTGCCTAGTCATATGTGTATGCAAAACAATCATACATGTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGCCTAGTCATATGTGTATGCAAAACAATCATACATGTGAATGT  250

seq1  ATATTATATGTATATAATAAAAATAAATGTTAATTTTTATAAAAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATGTATATAATAAAAATAAATGTTAATTTTTATAAAAGAAAAC  300

seq1  ATAAAAGAACATAAAGTTGGGTGGGTAGGTAGGAAGGATCGGGAGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACATAAAGTTGGGTGGGTAGGTAGGAAGGATCGGGAGTAATT  350

seq1  GGGGGAAGAAAAAACATGATCACAATATATTATATAAAAAGTTTTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGAAAAAACATGATCACAATATATTATATAAAAAGTTTTTCAAT  400

seq1  TAAGTAAAAGAAAAAAATTATGCATGGGACAATTACTGTCAGTTTAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAGAAAAAAATTATGCATGGGACAATTACTGTCAGTTTAGCAA  450

seq1  CAAATACCTTTTATCATTTATGGAATTC  478
      ||||||||||||||||||||||||||||
seq2  CAAATACCTTTTATCATTTATGGAATTC  478


seq1: chr3_132419676_132420700
seq2: B6Ng01-309N02.g_68_1087

seq1  GAATTCATTGTTAGAAATTACCTTTAAAATTAAGCCTTCAGGGCTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTAGAAATTACCTTTAAAATTAAGCCTTCAGGGCTATTGT  50

seq1  TTTGTATGACTAGGAAAAACATGTTTTTCTTGCTTCACGATAGTTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGACTAGGAAAAACATGTTTTTCTTGCTTCACGATAGTTTTTAT  100

seq1  AGAGGCCAGCACCCACAGGCTTAGAAGTCAAGGCACACATGAGTTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGCACCCACAGGCTTAGAAGTCAAGGCACACATGAGTTCCAGT  150

seq1  CGAGTTTCACCATGCTCGGCCTGTGTGAACTGAGAAACCTGTAGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCACCATGCTCGGCCTGTGTGAACTGAGAAACCTGTAGTGTGAT  200

seq1  GCTGCTGCTGCAAAAGCCTGCTCTGCAAAGGGAGAGTAGCCATGTACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCAAAAGCCTGCTCTGCAAAGGGAGAGTAGCCATGTACACA  250

seq1  GCACAGCACTTCAGCCACGTGGGCTGCCCCATTTATGTCAGCTTGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCACTTCAGCCACGTGGGCTGCCCCATTTATGTCAGCTTGGCCTG  300

seq1  AGCTAGATTCATCAGAGAGGTGGGAGGCTCAATGGAGAATCGCCTCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATTCATCAGAGAGGTGGGAGGCTCAATGGAGAATCGCCTCTCTA  350

seq1  AGACCAGGCTGTGGGCAGGCCTGGAAGGCATTTTTGGTGATTGAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGTGGGCAGGCCTGGAAGGCATTTTTGGTGATTGAGGTAGA  400

seq1  GGGTCCAGCCCATTGTGGGTGGGCCGCTTCTGGGATTGTAGTCCAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGCCCATTGTGGGTGGGCCGCTTCTGGGATTGTAGTCCAGGGTT  450

seq1  CTACAAGAAAGCAGACTAATCAAGTTCAAGACATGGGAAGTAAGCCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAAAGCAGACTAATCAAGTTCAAGACATGGGAAGTAAGCCAGTA  500

seq1  AGAGGCATGCCTCCATGGTCTCTGCATGAGCTTCTGCCTCAGGTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGCCTCCATGGTCTCTGCATGAGCTTCTGCCTCAGGTTTCTCC  550

seq1  CAATGTTTGAGTATCTGTCCTGACTTCCTTTGATAATGAACAGTAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTGAGTATCTGTCCTGACTTCCTTTGATAATGAACAGTAAAGTG  600

seq1  ACAGTATCACGTCTCACACTGTTGTGTTGACTACTAAAATAATATGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCACGTCTCACACTGTTGTGTTGACTACTAAAATAATATGCAAA  650

seq1  ATGCAGCCGGCATAAAAACTCATAAAGGGAAATATGCCCAACGTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCGGCATAAAAACTCATAAAGGGAAATATGCCCAACGTCTTTTT  700

seq1  TTTACACTTTTAAAAAACTTTATTAGTTATTTTATTTATTGACATTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTTTAAAAAACTTTATTAGTTATTTTATTTATTGACATTTCAG  750

seq1  ATATAATTCCTTCCTGGTTTCACCTCACAAACCCCCATCTCCTCCTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTCCTTCCTGGTTTCACCTCACAAACCCCCATCTCCTCCTCTTC  800

seq1  CCCTCTGCTTCTAGAGGGTATTCCCTCACCCACCCACTCCCACCTCACTA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTTCTAGA-GGTATTCCCTCACCCACCCACTCCCACCTCACTA  849

seq1  TCCTAGCATTCCCCTACACTGGGGCATCGAACCTTCACAGGACCAAGGG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTAGCATTCCCCTACACTGGGGCATCGAACCTTCACAGGACCAAGGGA  899

seq1  ACTCCCCTCCCACTGATGTCCAACAAGAATATCTTCTGCTAAATATGCGG  949
      |||||||| ||||||||||||||||   ||||||||||||||||||||||
seq2  ACTCCCCT-CCACTGATGTCCAACA--GATATCTTCTGCTAAATATGCGG  946

seq1  CTTGGAGACATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTC  999
      |||||||||||||   ||||||||||||||||||||||||| | ||||||
seq2  CTTGGAGACATGG--TCCTCCATGTGTACTCTTTGGTTGGTTGATTAGTC  994

seq1  CCTGGGAGCTCTGGGGATTGGGGGGT  1025
      ||||||||||||||||| ||||||||
seq2  CCTGGGAGCTCTGGGGAATGGGGGGT  1020


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