BAC Information

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BAC

Clone NameB6Ng01-310I22
Chromosome3 (Build37)
Map Location 63,043,649 - 63,171,480
singlet/doubletdoublet
Overlap geneMme
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310I22.bB6Ng01-310I22.g
ACCGA102501GA102502
length1,1711,088
definitionB6Ng01-310I22.b B6Ng01-310I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,170,289 - 63,171,480)(63,043,649 - 63,044,746)
sequence
gaattcatcaactacataagtaaaaaacgtatttcagttctttttcctta
tcatcaacatagaatagtgagcctttactatataaaggttttgatatata
tggaaggcttatgcctcttcccttgtagaaagttcacagtctcctagagg
ggcaggtgattgcatgctgaaactcatacagtgttataaatatttgtaaa
ttgtactttttttattacaataatcctcagcttccttaaggtgagcagta
tagcagaatcataaaaggtgttaattactaacaccacatttggttatcag
agtcacagggactgttgcagaatcaacagtgttgagctaacatatgatac
aatgatttgcataatactgaaactcagtctttaacatcacaccttataca
acaagaccatccttgagagctagttatgaaccaaggcaagttctatagca
ggtttatattacttttccaagagcatttatgccatagtgaagggagagga
aagtcactcgaaggatggagggctctgagttgaggagaaatagactatct
gggataacactggccagtataccaaggaagagaaattctaaaagaagatt
ccaaggtcagaacaggttgcctttgaatattctgctttgtattaatctgg
agatcacaccaagaggattacagatagcaatgcttggggcacaggatgct
aaggatggggccattccagatccacagggaagcagattaactctaaataa
agtgttattttagttgcaaccaacaagttgtacaaacaagttttaagaag
gagcaaaccatttctagggaatctagctgtatctagaaaaatgctcaaga
acacttataggaaattaaaaattatccagcacccagagatgtaaaatgca
tgctatttgccacctagtaaggaaaaacaaaaacaaaacaaaaacaaaca
acaacaaaaaaaacaactacaaaaaaaaaaaaaacccaaacattattacc
caacattcaaggtagtagcatgcacagctaggatttttattgtgacttca
gctttcagctttatacataagaatgttgtgttgcttcattgctgaccaca
tcactgtttcctttactctcatgtgcagtaataaatgaacggataatctt
ctcagtcctcaaccattctac
gaattctaaatcacaaataaagcccagattttagtagattagaggtaagg
ccattctctgactgttttttgaaccagtttcagaaaccttgatagtcagt
acctagcacagctgcttgaatacttccaaggactttgtctctcagaactg
tgctctgtcagtcaaaccacgtctttggagaactacatgagattagaaat
cactcagtggataatgtacctcatttaccacttggctatattccctgtga
gacttgatcttgccatttatctaagtgagcagggctcccactgctatctc
tctgtgtggcaataagccatgtgattactcatttcactttaaccatagac
agcaccaatcttaaggaggctgttttgggtgaaaccattgccaaaaaaca
aaagtcaagtgagggaaaggaaaattaacccatttctacaagaacaatag
agaaggaaataggtgggccaggaatgtgacaattttggcttctgtttttt
tctctgaggggggaaagaaagttagaccatcaagttagagagaagagaga
caagggaattgtaaaggcctaaatataaagcaaaaggtgttaattaaaag
acaataaattacatagatgagacacacacagaattctctactggaggcca
taaggacctacttcaggtaagactcatgaattccagaggaggtgcagtca
gatagcaatgagtgcctctcatttcctgtgtagacactctcattctgaga
tcattagtaaaagatatggtaagagaaaccttttaatgaaatttaaagtt
aaccccagaaatttttgtaagattgctaattaaagtactatagtaaaaat
aattttctggctttagtcattttatgttgaccattttaaagatgcttctt
ttgaactgttctatggctgtcaagatagctctccatgcaaaggctgaaag
gacagaactaatgtccacagtgtctgtgcatgtatacactcccaccctcc
acaaagaataaatgtataacactcacatgagtattttgtagaaatggggc
atcatacatgcatttttttctcttaaatagtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63170289_63171480
seq2: B6Ng01-310I22.b_43_1213 (reverse)

seq1  GTAGAATGGTTGAGGACTGAGTAGGATTATCTGGTCATTTATTACTGCAA  50
      ||||||||||||||||||||| | ||||||| | |||||||||||||| |
seq2  GTAGAATGGTTGAGGACTGAG-AAGATTATCCGTTCATTTATTACTGC-A  48

seq1  CATTGAGAGTAAAGGAAACAGTGATTGTGTCAGGAAAATGGAAGCAACAC  100
      || ||||||||||||||||||||||   ||||| ||    ||||||||||
seq2  CA-TGAGAGTAAAGGAAACAGTGATGTGGTCAGCAA---TGAAGCAACAC  94

seq1  AACATCTTTAATGTATAAAGCCTGAAAGCTGAAGTCAC-ATAAAAATCCT  149
      ||||| | | |||||||||| ||||||||||||||||| |||||||||||
seq2  AACAT-TCTTATGTATAAAG-CTGAAAGCTGAAGTCACAATAAAAATCCT  142

seq1  AGCTGGTGCATTGCTACTACCTTGAATGTTGGGTAATTAATGTTTGGGTT  199
      |||| ||||| ||||||||||||||||||||||||| |||||||||||||
seq2  AGCT-GTGCA-TGCTACTACCTTGAATGTTGGGTAA-TAATGTTTGGGTT  189

seq1  TTTTTTTTTTTTGTATGTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTTTT  249
      |||||||||||||||   ||||||||||| |  |||||||||| | ||||
seq2  TTTTTTTTTTTTGTA--GTTGTTTTTTTTGTTGTTGTTTGTTTTTGTTTT  237

seq1  GTTTTTTGTTTTTTGTTTTTTCCTTACTAGGTGGCAAATAGCATGCATTT  299
      ||||||          ||||||||||||||||||||||||||||||||||
seq2  GTTTTT---------GTTTTTCCTTACTAGGTGGCAAATAGCATGCATTT  278

seq1  TACATCTCTGGGTGCTGGATAATTTTTAATTTCCTATAAGTGTTCTTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCTGGGTGCTGGATAATTTTTAATTTCCTATAAGTGTTCTTGAG  328

seq1  CATTTTTCTAGATACAGCTAGATTCCCTAGAAATGGTTTGCTCCTTCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTAGATACAGCTAGATTCCCTAGAAATGGTTTGCTCCTTCTTA  378

seq1  AAACTTGTTTGTACAACTTGTTGGTTGCAACTAAAATAACACTTTATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTTTGTACAACTTGTTGGTTGCAACTAAAATAACACTTTATTTA  428

seq1  GAGTTAATCTGCTTCCCTGTGGATCTGGAATGGCCCCATCCTTAGCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATCTGCTTCCCTGTGGATCTGGAATGGCCCCATCCTTAGCATCC  478

seq1  TGTGCCCCAAGCATTGCTATCTGTAATCCTCTTGGTGTGATCTCCAGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCAAGCATTGCTATCTGTAATCCTCTTGGTGTGATCTCCAGATT  528

seq1  AATACAAAGCAGAATATTCAAAGGCAACCTGTTCTGACCTTGGAATCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGCAGAATATTCAAAGGCAACCTGTTCTGACCTTGGAATCTTC  578

seq1  TTTTAGAATTTCTCTTCCTTGGTATACTGGCCAGTGTTATCCCAGATAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATTTCTCTTCCTTGGTATACTGGCCAGTGTTATCCCAGATAGT  628

seq1  CTATTTCTCCTCAACTCAGAGCCCTCCATCCTTCGAGTGACTTTCCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCCTCAACTCAGAGCCCTCCATCCTTCGAGTGACTTTCCTCTC  678

seq1  CCTTCACTATGGCATAAATGCTCTTGGAAAAGTAATATAAACCTGCTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTATGGCATAAATGCTCTTGGAAAAGTAATATAAACCTGCTATA  728

seq1  GAACTTGCCTTGGTTCATAACTAGCTCTCAAGGATGGTCTTGTTGTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCCTTGGTTCATAACTAGCTCTCAAGGATGGTCTTGTTGTATAA  778

seq1  GGTGTGATGTTAAAGACTGAGTTTCAGTATTATGCAAATCATTGTATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATGTTAAAGACTGAGTTTCAGTATTATGCAAATCATTGTATCAT  828

seq1  ATGTTAGCTCAACACTGTTGATTCTGCAACAGTCCCTGTGACTCTGATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTCAACACTGTTGATTCTGCAACAGTCCCTGTGACTCTGATAA  878

seq1  CCAAATGTGGTGTTAGTAATTAACACCTTTTATGATTCTGCTATACTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTGGTGTTAGTAATTAACACCTTTTATGATTCTGCTATACTGCT  928

seq1  CACCTTAAGGAAGCTGAGGATTATTGTAATAAAAAAAGTACAATTTACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAAGGAAGCTGAGGATTATTGTAATAAAAAAAGTACAATTTACAA  978

seq1  ATATTTATAACACTGTATGAGTTTCAGCATGCAATCACCTGCCCCTCTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAACACTGTATGAGTTTCAGCATGCAATCACCTGCCCCTCTAG  1028

seq1  GAGACTGTGAACTTTCTACAAGGGAAGAGGCATAAGCCTTCCATATATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTGAACTTTCTACAAGGGAAGAGGCATAAGCCTTCCATATATAT  1078

seq1  CAAAACCTTTATATAGTAAAGGCTCACTATTCTATGTTGATGATAAGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTTTATATAGTAAAGGCTCACTATTCTATGTTGATGATAAGGAA  1128

seq1  AAAGAACTGAAATACGTTTTTTACTTATGTAGTTGATGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGAAATACGTTTTTTACTTATGTAGTTGATGAATTC  1171

seq1: chr3_63043649_63044746
seq2: B6Ng01-310I22.g_64_1151

seq1  GAATTCTAAATCACAAATAAAGCCCAGATTTTAGTAGATTAGAGGTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATCACAAATAAAGCCCAGATTTTAGTAGATTAGAGGTAAGG  50

seq1  CCATTCTCTGACTGTTTTTTGAACCAGTTTCAGAAACCTTGATAGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTGACTGTTTTTTGAACCAGTTTCAGAAACCTTGATAGTCAGT  100

seq1  ACCTAGCACAGCTGCTTGAATACTTCCAAGGACTTTGTCTCTCAGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCACAGCTGCTTGAATACTTCCAAGGACTTTGTCTCTCAGAACTG  150

seq1  TGCTCTGTCAGTCAAACCACGTCTTTGGAGAACTACATGAGATTAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTCAGTCAAACCACGTCTTTGGAGAACTACATGAGATTAGAAAT  200

seq1  CACTCAGTGGATAATGTACCTCATTTACCACTTGGCTATATTCCCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTGGATAATGTACCTCATTTACCACTTGGCTATATTCCCTGTGA  250

seq1  GACTTGATCTTGCCATTTATCTAAGTGAGCAGGGCTCCCACTGCTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATCTTGCCATTTATCTAAGTGAGCAGGGCTCCCACTGCTATCTC  300

seq1  TCTGTGTGGCAATAAGCCATGTGATTACTCATTTCACTTTAACCATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGCAATAAGCCATGTGATTACTCATTTCACTTTAACCATAGAC  350

seq1  AGCACCAATCTTAAGGAGGCTGTTTTGGGTGAAACCATTGCCAAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATCTTAAGGAGGCTGTTTTGGGTGAAACCATTGCCAAAAAACA  400

seq1  AAAGTCAAGTGAGGGAAAGGAAAATTAACCCATTTCTACAAGAACAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGTGAGGGAAAGGAAAATTAACCCATTTCTACAAGAACAATAG  450

seq1  AGAAGGAAATAGGTGGGCCAGGAATGTGACAATTTTGGCTTCTGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAATAGGTGGGCCAGGAATGTGACAATTTTGGCTTCTGTTTTTT  500

seq1  TCTCTGAGGGGGGAAAGAAAGTTAGACCATCAAGTTAGAGAGAAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGGGGGAAAGAAAGTTAGACCATCAAGTTAGAGAGAAGAGAGA  550

seq1  CAAGGGAATTGTAAAGGCCTAAATATAAAGCAAAAGGTGTTAATTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAATTGTAAAGGCCTAAATATAAAGCAAAAGGTGTTAATTAAAAG  600

seq1  ACAATAAATTACATAGATGAGACACACACAGAATTCTCTACTGGAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATTACATAGATGAGACACACACAGAATTCTCTACTGGAGGCCA  650

seq1  TAAGGACCTACTTCAGGTAAGACTCATGAATTCCAGAGGAGGTGCAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCTACTTCAGGTAAGACTCATGAATTCCAGAGGAGGTGCAGTCA  700

seq1  GATAGCAATGAGTGCCTCTCATTTCCTGTGTAGACACTCTCATTCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAATGAGTGCCTCTCATTTCCTGTGTAGACACTCTCATTCTGAGA  750

seq1  TCATTAGTAAAAGATATGGTAAGAGAAACCTTTTAATGAAATTTAAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTAAAAGATATGGTAAGAGAAACCTTTTAATGAAATTTAAAGTT  800

seq1  AACCCCAGAAATTTTTGTAAGATTGCTAATTAAAGTACTATAGTAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGAAATTTTTGTAAGATTGCTAATTAAAGTACTATAGTAAAAAT  850

seq1  AATTTTCTGGCTTTAGTCATTTTATGTTGACCATTTTAAAGATGCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGGCTTTAGTCATTTTATGTTGACCATTTTAAAGATGCTTCTT  900

seq1  TTGAACTGTTCTATGGCTGTCAAGATAGCTCTCCATGCAAAGGCTGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTTCTATGGCTGTCAAGATAGCTCTCCATGCAAAGGCTGAAAG  950

seq1  GACAGAACTAATGTCCACAAGTGTCTTGTGCATGTATACAACCTCCCACC  1000
      |||||||||||||||||| |||||| ||||||||||||||  ||||||||
seq2  GACAGAACTAATGTCCAC-AGTGTC-TGTGCATGTATACA--CTCCCACC  996

seq1  CTCCACAAAAGAAATAAATGGAATTAAAACACTCACAATGAAGTA-TTTG  1049
      |||||||||   ||||||||    || ||||||||| ||| |||| ||||
seq2  CTCCACAAA--GAATAAATG----TATAACACTCAC-ATG-AGTATTTTG  1038

seq1  TAGGAAATGGGGCATCATACATGCA--TTTTTCTCTTAAATAGTTTTTTT  1097
      || ||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TA-GAAATGGGGCATCATACATGCATTTTTTTCTCTTAAATAGTTTTTTT  1087

seq1  T  1098
      |
seq2  T  1088