BAC Information

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BAC

Clone NameB6Ng01-311I09
Chromosome3 (Build37)
Map Location 90,117,775 - 90,317,399
singlet/doubletdoublet
Overlap geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneS100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311I09.bB6Ng01-311I09.g
ACCGA103220GA103221
length1,123895
definitionB6Ng01-311I09.b B6Ng01-311I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,316,272 - 90,317,399)(90,117,775 - 90,118,658)
sequence
gaattctctctcccactgtctctgtaacaactgcttcttgtgactggagt
tcaggtgacagtcacaagggctccactgaagagctggcatgtcatctaat
caggacccattgtccagaatactcagtggtgaagaaggatgaggacacct
gagctgagacacatgagcaacccctgaggctgtggaaggcatgaccctcc
cagggccgaaagatcgagccccccaccccaccccagtttagtagtctctt
ctcaatagacttctccattctcccactctcgcccagcccttgagctcaaa
tgacctcatacattcagccctttatcaaacacaaaccagccctagcctgc
tcccactggagctaccgaaccaacgctggcccgtggcagcaatggacagc
atcaggaagaacacctacaaagctcgtctccaaggaaaagcctcagacat
ctcttctcccttccttctacctacctgatggaaagggatgattttgcaga
gaaaaggactagaacaggcagtcatgttaagaataccgccataccgcccc
ccccacccccgtcccccaaagaagccaaaatggcatgctgaagagagagg
gggaactcagaccagtaatctcagcacacagagacacgactgcccagaag
ctaaggatctgcttgagctaattccaggacagcacaggctacagagtgtg
accctgctataaataaataaatcccaagcacaaaaagatggagatgtagc
caaagggacctgggctgaatcctcggtatcttaagaggaagagccatgct
tgctgacaggaagcttgggaacagtaagacacctcttcctcactgacccc
ccatcagctcaccaaaggtatcagacttcttcctggggtaggcagaggag
atcgtagcccacttagtagcaacaacaagcttaactgtgacaggcctgga
aggtaaaactagagctcgaagctgcctggtcctgtgtccacccatgtctc
ccctcccgcttcccagcctgagtcagccactgcagatgttcttttgcagc
tctgaagacagtccagtttctatggctcatctcaatgactattcctgact
cccctctgacgggaattgataga
gaattcttcgtcaaaaatctctattgtatgatcctagccattaggaggct
gagacagaatgattgataattccaggttaatctgccttacaaagtgaaag
gctgctgggcaaaacaaagcaacccttcccaaagaaacaaaatctgtttt
tgaatagctcttatcagtacactctttgttttgagacaaaatttcactct
gtagtccaggctggtctggaactcactctagtccaggatggccttgaatt
tatagcaagctccctgcttcagtctctagtgctggaattatgtgttttga
gtcaccatgccatgcctagctttgaatatgtttttccttctttcaataaa
gactgagacagacacagatacttgtacctaaccattggactgaagttggg
gactcctatggttgaattaggggaaggatttaaaaatctgaaggggaagg
tgaccccagaggaagaccagcagactcaacaaacccagacccctgggagc
tcccagagactgagccaccaaccaggcagcatacatgggctgatctgagg
cccctggcacatatataccacactgcctggtttggcctcagtgtgagaag
atggacctaatcctcaagagacttgaggccccagggaagggggatgcctg
ttgggtggggatcatcctctaggaggtaaaggggaggagaaatgggatga
ggaactgtgggaggaggaaccaggagagggagtcaacagctggaaatgta
aaagaaaataaaataaaaataatataatctagtctttttttgcaatatat
cttgggataaggagcaatgaaatttttaaaaggatttattttttatgtgt
gtcaggagctgcttgaattttatgtacatgtaccacttctatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90316272_90317399
seq2: B6Ng01-311I09.b_49_1171 (reverse)

seq1  TCTATCATTTCCCCGTCAGA-GGGAGTCAGGGATAGGCATGGAGATGAAG  49
      ||||||| || ||||||||| |||||||||| |||| ||| |||||| ||
seq2  TCTATCAATT-CCCGTCAGAGGGGAGTCAGGAATAGTCATTGAGATG-AG  48

seq1  CAATAGGAACTGGACTGTCTTCAGAAGCCTGCAAAAG-ACATCTGCAGTG  98
      | |||| ||||||||||||||||||   ||||||||| ||||||||||||
seq2  CCATAGAAACTGGACTGTCTTCAGA--GCTGCAAAAGAACATCTGCAGTG  96

seq1  GCTGACTCAAGGCTGGGGAGCGGGAGGGGAGACATGGGTGGACACAGGAC  148
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGACTC-AGGCTGGGAAGCGGGAGGGGAGACATGGGTGGACACAGGAC  145

seq1  CAGGCAGGCTTCGAGCTCTAGTTTTACCTTCCAGGCCTGTCACAGTTAAG  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCA-GCTTCGAGCTCTAGTTTTACCTTCCAGGCCTGTCACAGTTAAG  194

seq1  CTTTGTTGTTGCTACTAAGTGGGCTACGATCTCCTCTGCCTACCCCAGGA  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTGTTGTTGCTACTAAGTGGGCTACGATCTCCTCTGCCTACCCCAGGA  243

seq1  AGAAGTCTGATACCTTTGGTGAGCTGATGGGGGGTCAGTGAGGAAGAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGATACCTTTGGTGAGCTGATGGGGGGTCAGTGAGGAAGAGGT  293

seq1  GTCTTACTGTTCCCAAGCTTCCTGTCAGCAAGCATGGCTCTTCCTCTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACTGTTCCCAAGCTTCCTGTCAGCAAGCATGGCTCTTCCTCTTAA  343

seq1  GATACCGAGGATTCAGCCCAGGTCCCTTTGGCTACATCTCCATCTTTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCGAGGATTCAGCCCAGGTCCCTTTGGCTACATCTCCATCTTTTTG  393

seq1  TGCTTGGGATTTATTTATTTATAGCAGGGTCACACTCTGTAGCCTGTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGATTTATTTATTTATAGCAGGGTCACACTCTGTAGCCTGTGCT  443

seq1  GTCCTGGAATTAGCTCAAGCAGATCCTTAGCTTCTGGGCAGTCGTGTCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAATTAGCTCAAGCAGATCCTTAGCTTCTGGGCAGTCGTGTCTC  493

seq1  TGTGTGCTGAGATTACTGGTCTGAGTTCCCCCTCTCTCTTCAGCATGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGAGATTACTGGTCTGAGTTCCCCCTCTCTCTTCAGCATGCCA  543

seq1  TTTTGGCTTCTTTGGGGGACGGGGGTGGGGGGGGCGGTATGGCGGTATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTCTTTGGGGGACGGGGGTGGGGGGGGCGGTATGGCGGTATTC  593

seq1  TTAACATGACTGCCTGTTCTAGTCCTTTTCTCTGCAAAATCATCCCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGACTGCCTGTTCTAGTCCTTTTCTCTGCAAAATCATCCCTTTC  643

seq1  CATCAGGTAGGTAGAAGGAAGGGAGAAGAGATGTCTGAGGCTTTTCCTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTAGGTAGAAGGAAGGGAGAAGAGATGTCTGAGGCTTTTCCTTG  693

seq1  GAGACGAGCTTTGTAGGTGTTCTTCCTGATGCTGTCCATTGCTGCCACGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAGCTTTGTAGGTGTTCTTCCTGATGCTGTCCATTGCTGCCACGG  743

seq1  GCCAGCGTTGGTTCGGTAGCTCCAGTGGGAGCAGGCTAGGGCTGGTTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGTTGGTTCGGTAGCTCCAGTGGGAGCAGGCTAGGGCTGGTTTGT  793

seq1  GTTTGATAAAGGGCTGAATGTATGAGGTCATTTGAGCTCAAGGGCTGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAAAGGGCTGAATGTATGAGGTCATTTGAGCTCAAGGGCTGGGC  843

seq1  GAGAGTGGGAGAATGGAGAAGTCTATTGAGAAGAGACTACTAAACTGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGGAGAATGGAGAAGTCTATTGAGAAGAGACTACTAAACTGGGG  893

seq1  TGGGGTGGGGGGCTCGATCTTTCGGCCCTGGGAGGGTCATGCCTTCCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGGGGCTCGATCTTTCGGCCCTGGGAGGGTCATGCCTTCCACA  943

seq1  GCCTCAGGGGTTGCTCATGTGTCTCAGCTCAGGTGTCCTCATCCTTCTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGGGTTGCTCATGTGTCTCAGCTCAGGTGTCCTCATCCTTCTTC  993

seq1  ACCACTGAGTATTCTGGACAATGGGTCCTGATTAGATGACATGCCAGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGTATTCTGGACAATGGGTCCTGATTAGATGACATGCCAGCTC  1043

seq1  TTCAGTGGAGCCCTTGTGACTGTCACCTGAACTCCAGTCACAAGAAGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGAGCCCTTGTGACTGTCACCTGAACTCCAGTCACAAGAAGCAG  1093

seq1  TTGTTACAGAGACAGTGGGAGAGAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TTGTTACAGAGACAGTGGGAGAGAGAATTC  1123

seq1: chr3_90117775_90118658
seq2: B6Ng01-311I09.g_68_962

seq1  GAATTCTTCGTCAAAAATCTCTATTGTATGATCCTAGCCATTAGGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGTCAAAAATCTCTATTGTATGATCCTAGCCATTAGGAGGCT  50

seq1  GAGACAGAATGATTGATAATTCCAGGTTAATCTGCCTTACAAAGTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAATGATTGATAATTCCAGGTTAATCTGCCTTACAAAGTGAAAG  100

seq1  GCTGCTGGGCAAAACAAAGCAACCCTTCCCAAAGAAACAAAATCTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGCAAAACAAAGCAACCCTTCCCAAAGAAACAAAATCTGTTTT  150

seq1  TGAATAGCTCTTATCAGTACACTCTTTGTTTTGAGACAAAATTTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCTCTTATCAGTACACTCTTTGTTTTGAGACAAAATTTCACTCT  200

seq1  GTAGTCCAGGCTGGTCTGGAACTCACTCTAGTCCAGGATGGCCTTGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCAGGCTGGTCTGGAACTCACTCTAGTCCAGGATGGCCTTGAATT  250

seq1  TATAGCAAGCTCCCTGCTTCAGTCTCTAGTGCTGGAATTATGTGTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGCTCCCTGCTTCAGTCTCTAGTGCTGGAATTATGTGTTTTGA  300

seq1  GTCACCATGCCATGCCTAGCTTTGAATATGTTTTTCCTTCTTTCAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGCCATGCCTAGCTTTGAATATGTTTTTCCTTCTTTCAATAAA  350

seq1  GACTGAGACAGACACAGATACTTGTACCTAACCATTGGACTGAAGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGACAGACACAGATACTTGTACCTAACCATTGGACTGAAGTTGGG  400

seq1  GACTCCTATGGTTGAATTAGGGGAAGGATTTAAAAATCTGAAGGGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTATGGTTGAATTAGGGGAAGGATTTAAAAATCTGAAGGGGAAGG  450

seq1  TGACCCCAGAGGAAGACCAGCAGACTCAACAAACCCAGACCCCTGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGAGGAAGACCAGCAGACTCAACAAACCCAGACCCCTGGGAGC  500

seq1  TCCCAGAGACTGAGCCACCAACCAGGCAGCATACATGGGCTGATCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGACTGAGCCACCAACCAGGCAGCATACATGGGCTGATCTGAGG  550

seq1  CCCCTGGCACATATATACCACACTGCCTGGTTTGGCCTCAGTGTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCACATATATACCACACTGCCTGGTTTGGCCTCAGTGTGAGAAG  600

seq1  ATGGACCTAATCCTCAAGAGACTTGAGGCCCCAGGGAAGGGGGATGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTAATCCTCAAGAGACTTGAGGCCCCAGGGAAGGGGGATGCCTG  650

seq1  TTGGGTGGGGATCATCCTCTAGGAGGTAAAGGGGAGGAGAAATGGGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGGATCATCCTCTAGGAGGTAAAGGGGAGGAGAAATGGGATGA  700

seq1  GGAACTGTGGGAGGAGGAACCAGGAGAGGGAGTCAACAGCTGG-AATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAACTGTGGGAGGAGGAACCAGGAGAGGGAGTCAACAGCTGGAAATGTA  750

seq1  AA--GAAATAAAAT-AAAATAATAT-ATCTAGTC-TTTTTTGCAATAT-T  793
      ||   ||||||||| |||||||||| |||||||| ||||||||||||| |
seq2  AAAGAAAATAAAATAAAAATAATATAATCTAGTCTTTTTTTGCAATATAT  800

seq1  CTT-GGAT-AGGAGCAATGAATTTTTTAAAAGGATTTA-TTTTTATGTGT  840
      ||| |||| |||||||||||| |||||||||||||||| |||||||||||
seq2  CTTGGGATAAGGAGCAATGAAATTTTTAAAAGGATTTATTTTTTATGTGT  850

seq1  GTCAGGAGCTGCATGTA-TTTATGTACATGTACCACTTCTATGAC  884
      |||||||||||| || | |||||||||||||||||||||||||||
seq2  GTCAGGAGCTGCTTGAATTTTATGTACATGTACCACTTCTATGAC  895