BAC Information

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BAC

Clone NameB6Ng01-311L01
Chromosome3 (Build37)
Map Location 96,188,484 - 96,238,016
singlet/doubletdoublet
Overlap genePafah1b1-ps1, Terc, BC107364
Upstream gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream geneLOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L01.bB6Ng01-311L01.g
ACCGA103346GA103347
length1,120447
definitionB6Ng01-311L01.b B6Ng01-311L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,236,911 - 96,238,016)(96,188,484 - 96,188,938)
sequence
gaattcatacaggagattacatcaggtttctgttcttcccttgaaaggac
aacataaaatccatttgtcttcatttaaggaccaggattgatttagaaaa
gaaagccgtaagacaccagctccaggaacagaccataaaatccaggagca
aggtcatcaaaccccctcccaagaacagcctggggataaccacaaaaatg
ggaaaatatctcagggtgagccatctgtgctgggcagccctatcccatct
catggttaaacattcatgacataggaatacagaccactgaccacctgtga
ccacctagcacccaccaataagttttacattatctaatccctctaaaaat
tcccctaattccctttaagaaggcctgtgcacctttgtctagggttgcca
tttagaagaatggttgaccccaccaccaccaccaccaatgttgattgttt
ctgcagaataaatgctgtttgtctttacataatatctgagtctggggtct
tccttcagctattttctaatgtgcttttccaaactttttcttttgtccat
agtctttccagcacagcatatgttatatacatccacctgatatacccata
agggagccaacgtttcctgacggaagtaagcaggtggtataaaggaaagc
catggcagatataacctggatgggctgcgttgtctaggctgggcagctga
agctccaaggtctctaggaagctttccaagggtgataaccgagtccttga
atgttgcgttctctcattcttctcctatcccccgaagtggaaatttctag
ctgtgtcatgtgatatgttgctgaagcagacccccgagaggacacgtgag
gtttggagagagtgtaagtaagccctaacagacagtgaggagcgctttcg
ttgcctgccgtgcaacactgtgttagtttttcttctttgcagatctttac
tttgtttgttgagagagcatggcagaagacttctggcattctggctggtt
ctggtcacctcccgtagagtcctggcttgtttctgctgggatcggtgcca
tcactgctgattcgtatttggtgacatgtttgactgacttgttggtatct
tgacaaagaagattggaatc
ttcattgcaccttgtttcttccatgtctcaagggacccagaagggcagcg
aaattcacctagaaaggagacagcaggagactggagagagatatggcttg
gctgttaagaatgttgccagagatggaggcaatggctaagcaataaccaa
cccaacttgagacccatcccatgggcatgcaccaatctcagacactacta
atgatactctgttatattcgcagtcagcctagcataactgtcctctgaga
ggttccacacagcagcggactgaaacagatgcagagacccagagccagac
attgggtggagctgggggagtcttgtggaagagatggggggaggattgaa
gcccacaaatggataggattccactacattcatctaacctggacccttgg
ctctccgagactgttttccatccagagagagtacacgggctgaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96236911_96238016
seq2: B6Ng01-311L01.b_56_1163 (reverse)

seq1  GATTCCAATCTTCTTTGTCAAGATACCAACAGTCCAGTTCAAACATGTCA  50
      |||||||||||||||||||||||||||||||   ||| ||||||||||||
seq2  GATTCCAATCTTCTTTGTCAAGATACCAACAAGTCAG-TCAAACATGTCA  49

seq1  CCAAATACGAATCAGCAGTGATGGCA-CGAT-CCAGCAGAAAC-AGCCAG  97
      |||||||||||||||||||||||||| |||| ||||||||||| ||||||
seq2  CCAAATACGAATCAGCAGTGATGGCACCGATCCCAGCAGAAACAAGCCAG  99

seq1  GACTCTACGGGA-GTGACCAGAACCAGCCAGAATGCCAGAAGTTCTCTGC  146
      |||||||||||| ||||||||||||||||||||||||||||||  |||||
seq2  GACTCTACGGGAGGTGACCAGAACCAGCCAGAATGCCAGAAGTCTTCTGC  149

seq1  CATGCTTCTCTCAACAAACAAAGTAAAGATCTGCAAAGAAGAAAAACTAA  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGC-TCTCTCAACAAACAAAGTAAAGATCTGCAAAGAAGAAAAACTAA  198

seq1  CACAGTGTTGCACGGCAGGCAACGAAAGCGCTCCTCACTGTCTGTTAGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTTGCACGGCAGGCAACGAAAGCGCTCCTCACTGTCTGTTAGGG  248

seq1  CTTACTTACACTCTCTCCAAACCTCACGTGTCCTCTCGGGGGTCTGCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTACACTCTCTCCAAACCTCACGTGTCCTCTCGGGGGTCTGCTTC  298

seq1  AGCAACATATCACATGACACAGCTAGAAATTTCCACTTCGGGGGATAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATATCACATGACACAGCTAGAAATTTCCACTTCGGGGGATAGGA  348

seq1  GAAGAATGAGAGAACGCAACATTCAAGGACTCGGTTATCACCCTTGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGAGAGAACGCAACATTCAAGGACTCGGTTATCACCCTTGGAAA  398

seq1  GCTTCCTAGAGACCTTGGAGCTTCAGCTGCCCAGCCTAGACAACGCAGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAGAGACCTTGGAGCTTCAGCTGCCCAGCCTAGACAACGCAGCC  448

seq1  CATCCAGGTTATATCTGCCATGGCTTTCCTTTATACCACCTGCTTACTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGTTATATCTGCCATGGCTTTCCTTTATACCACCTGCTTACTTC  498

seq1  CGTCAGGAAACGTTGGCTCCCTTATGGGTATATCAGGTGGATGTATATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGAAACGTTGGCTCCCTTATGGGTATATCAGGTGGATGTATATAA  548

seq1  CATATGCTGTGCTGGAAAGACTATGGACAAAAGAAAAAGTTTGGAAAAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGTGCTGGAAAGACTATGGACAAAAGAAAAAGTTTGGAAAAGC  598

seq1  ACATTAGAAAATAGCTGAAGGAAGACCCCAGACTCAGATATTATGTAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGAAAATAGCTGAAGGAAGACCCCAGACTCAGATATTATGTAAAG  648

seq1  ACAAACAGCATTTATTCTGCAGAAACAATCAACATTGGTGGTGGTGGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGCATTTATTCTGCAGAAACAATCAACATTGGTGGTGGTGGTGG  698

seq1  TGGGGTCAACCATTCTTCTAAATGGCAACCCTAGACAAAGGTGCACAGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCAACCATTCTTCTAAATGGCAACCCTAGACAAAGGTGCACAGGC  748

seq1  CTTCTTAAAGGGAATTAGGGGAATTTTTAGAGGGATTAGATAATGTAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAGGGAATTAGGGGAATTTTTAGAGGGATTAGATAATGTAAAA  798

seq1  CTTATTGGTGGGTGCTAGGTGGTCACAGGTGGTCAGTGGTCTGTATTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGTGGGTGCTAGGTGGTCACAGGTGGTCAGTGGTCTGTATTCCT  848

seq1  ATGTCATGAATGTTTAACCATGAGATGGGATAGGGCTGCCCAGCACAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGAATGTTTAACCATGAGATGGGATAGGGCTGCCCAGCACAGAT  898

seq1  GGCTCACCCTGAGATATTTTCCCATTTTTGTGGTTATCCCCAGGCTGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCCTGAGATATTTTCCCATTTTTGTGGTTATCCCCAGGCTGTTC  948

seq1  TTGGGAGGGGGTTTGATGACCTTGCTCCTGGATTTTATGGTCTGTTCCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGGGTTTGATGACCTTGCTCCTGGATTTTATGGTCTGTTCCTG  998

seq1  GAGCTGGTGTCTTACGGCTTTCTTTTCTAAATCAATCCTGGTCCTTAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGTGTCTTACGGCTTTCTTTTCTAAATCAATCCTGGTCCTTAAAT  1048

seq1  GAAGACAAATGGATTTTATGTTGTCCTTTCAAGGGAAGAACAGAAACCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAATGGATTTTATGTTGTCCTTTCAAGGGAAGAACAGAAACCTG  1098

seq1  ATGTAATCTC  1106
      ||||||||||
seq2  ATGTAATCTC  1108

seq1: chr3_96188484_96188938
seq2: B6Ng01-311L01.g_66_518

seq1  GAATTCTTCATTGCACCTTGTTTCTTCCATGTCTCAAGGGACCCAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTGCACCTTGTTTCTTCCATGTCTCAAGGGACCCAGAAGG  50

seq1  GCAGCGAAATTCACCTAGAAAGGAGACAGCAGGAGACTGGAGAGAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAAATTCACCTAGAAAGGAGACAGCAGGAGACTGGAGAGAGATAT  100

seq1  GGCTTGGCTGTTAAGAATGTTGCCAGAGATGGAGGCAATGGCTAAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTGTTAAGAATGTTGCCAGAGATGGAGGCAATGGCTAAGCAAT  150

seq1  AACCAACCCAACTTGAGACCCATCCCATGGGCATGCACCAATCTCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCCAACTTGAGACCCATCCCATGGGCATGCACCAATCTCAGACA  200

seq1  CTACTAATGATACTCTGTTATATTCGCAGTCAGCCTAGCATAACTGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATGATACTCTGTTATATTCGCAGTCAGCCTAGCATAACTGTCCT  250

seq1  CTGAGAGGTTCCACACAGCAGCGGACTGAAACAGATGCAGAGACCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGTTCCACACAGCAGCGGACTGAAACAGATGCAGAGACCCAGAG  300

seq1  CCAGACATTGGGTGGAGCTGGGGGAGTCTTGTGGAAGAGATGGGGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTGGGTGGAGCTGGGGGAGTCTTGTGGAAGAGATGGGGGGAGG  350

seq1  ATTGAAGCCCACAAAGTGGATAGGATTCCACTACAGTCAACTAACCTGGA  400
      ||||||||||||||| ||||||||||||||||||| ||| ||||||||||
seq2  ATTGAAGCCCACAAA-TGGATAGGATTCCACTACATTCATCTAACCTGGA  399

seq1  CCCTTGGCTCTCCGAGACTGAACCACCAGCCAAAGAGAGTACACGGGCTG  450
      ||||||||||||||||||||     ||| ||| |||||||||||||||||
seq2  CCCTTGGCTCTCCGAGACTG-TTTTCCATCCAGAGAGAGTACACGGGCTG  448

seq1  AACTG  455
      |||||
seq2  AACTG  453