BAC Information

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BAC

Clone NameB6Ng01-316A19
Chromosome3 (Build37)
Map Location 120,168,336 - 120,208,160
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316A19.bB6Ng01-316A19.g
ACCGA106542GA106543
length7431,076
definitionB6Ng01-316A19.b B6Ng01-316A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,207,418 - 120,208,160)(120,168,336 - 120,169,417)
sequence
gaattctttgtacaatgctgcaccccattttaatagggttatttgggtct
ctggagtctaatttcttgagttctttgtataaattggatattagtcctct
attggatgtagggttggtaaagatcttttcccaatctgttcgttgccatt
ttgtcctattgacagtgtcctttgccttacagaagctttgtacttttatg
aggtcctgttatgccctaagttcacaggaaaccctgacaagcccaagaat
tgtgaagtctgctgcaacttgcaagcaaaagggtctttattttcaagttt
gaacttggtttgtccacctagcactcactttgaatgctggcaagcaaacc
tgaatccagaaaagattgagtttatatacagtatagttagaaatagtgtg
actatttacagaaaaggggagtagagggtagactagtactgaagcgggag
gggttttaatgggttcaagcactaattttatgaccaggtgtaactgttag
tgacctcacctctgtttaacttttactttttccatggtctcccttgagct
tgttatttctctaaggtctcaagaagaagcacctggagatttatcaggag
gcatgttggtctttggagacacagaggaggtgcccttctaacactagggg
aaggggagggagccctgggatgctcaggaggatgctgcacagactccagc
tgtatgcatatcctgcttgccttgggggggatgtaggatggga

gaattcttctttcttccaactttctccaatcttgcaaccccctaatacta
catagaagaacaaaagcgataggggggagaggctgtgacattatcattag
actacttactgatgattagggacattgagttccttggggcaaggttgatc
ttcaacttcagaatatctaatttcttctctcttctttgtacacaagtacc
atgaccaacaacaactaacagctaccaaccaacaatccacaacacacact
gccttttggggccctagcatttatataccttctgaaacgtccccagaatt
ccaaatgtcacacaaattgcataaactatctgcccctggaaaaatcatgt
ccctgctggagcatgaggcaaatcatagtcagctgctgtggataatctga
ggcagccccctatatcccacacctggaattaaaaggaaaacatcttcaca
atacttctgcagcttttttaaagataccaaactctaaaattgtcactgca
gttccccaccttgggcgagcgacccttagttcccgttggtcaggaaagta
aaagtaaaatgaaggagaggaacctcaacagaagcagactgccttttatt
caaaagatgaaggacggcaatatctcagagggagcctgtgtattaaggcc
ttagggtgttatttttttagggtggaagattccatctgcagatcagctac
cctcagcctcaaagctgtaaataccaatggaggttggtgtgctgaccttc
ttgcctgaagcttcctagctccccctgcagatgttatcagcctgtcagct
tttctgtaggtagtttctcagctaccctgatgcttttagttcatgaactt
ttcagggcccagggggcctcggaattgaattagggtccccaggtttttag
ggcaagtattttatgaactgagccatcgttctagcctaagaatgactcac
tgcaaaaggcaagttaaatcaaattcttcttcttctcaagttcttttttc
ttctcacaggtcacctaaacttacataaaagctttcgaacactctatcag
tctacctcatccttctaacatatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120207418_120208160
seq2: B6Ng01-316A19.b_46_788 (reverse)

seq1  TCCCATCCTACATCCCCCCCAAGGCAAGCAGGATATGCATACAGCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCTACATCCCCCCCAAGGCAAGCAGGATATGCATACAGCTGGAG  50

seq1  TCTGTGCAGCATCCTCCTGAGCATCCCAGGGCTCCCTCCCCTTCCCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGCATCCTCCTGAGCATCCCAGGGCTCCCTCCCCTTCCCCTAG  100

seq1  TGTTAGAAGGGCACCTCCTCTGTGTCTCCAAAGACCAACATGCCTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGGGCACCTCCTCTGTGTCTCCAAAGACCAACATGCCTCCTGA  150

seq1  TAAATCTCCAGGTGCTTCTTCTTGAGACCTTAGAGAAATAACAAGCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCCAGGTGCTTCTTCTTGAGACCTTAGAGAAATAACAAGCTCAA  200

seq1  GGGAGACCATGGAAAAAGTAAAAGTTAAACAGAGGTGAGGTCACTAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCATGGAAAAAGTAAAAGTTAAACAGAGGTGAGGTCACTAACAG  250

seq1  TTACACCTGGTCATAAAATTAGTGCTTGAACCCATTAAAACCCCTCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTGGTCATAAAATTAGTGCTTGAACCCATTAAAACCCCTCCCGC  300

seq1  TTCAGTACTAGTCTACCCTCTACTCCCCTTTTCTGTAAATAGTCACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACTAGTCTACCCTCTACTCCCCTTTTCTGTAAATAGTCACACTA  350

seq1  TTTCTAACTATACTGTATATAAACTCAATCTTTTCTGGATTCAGGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTATACTGTATATAAACTCAATCTTTTCTGGATTCAGGTTTGC  400

seq1  TTGCCAGCATTCAAAGTGAGTGCTAGGTGGACAAACCAAGTTCAAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCATTCAAAGTGAGTGCTAGGTGGACAAACCAAGTTCAAACTTG  450

seq1  AAAATAAAGACCCTTTTGCTTGCAAGTTGCAGCAGACTTCACAATTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGACCCTTTTGCTTGCAAGTTGCAGCAGACTTCACAATTCTTG  500

seq1  GGCTTGTCAGGGTTTCCTGTGAACTTAGGGCATAACAGGACCTCATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCAGGGTTTCCTGTGAACTTAGGGCATAACAGGACCTCATAAAA  550

seq1  GTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAGGACAAAATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAGGACAAAATGGCA  600

seq1  ACGAACAGATTGGGAAAAGATCTTTACCAACCCTACATCCAATAGAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACAGATTGGGAAAAGATCTTTACCAACCCTACATCCAATAGAGGAC  650

seq1  TAATATCCAATTTATACAAAGAACTCAAGAAATTAGACTCCAGAGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATTTATACAAAGAACTCAAGAAATTAGACTCCAGAGACCCA  700

seq1  AATAACCCTATTAAAATGGGGTGCAGCATTGTACAAAGAATTC  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCTATTAAAATGGGGTGCAGCATTGTACAAAGAATTC  743


seq1: chr3_120168336_120169417
seq2: B6Ng01-316A19.g_67_1141

seq1  AATTCTTCTTTCTTCCAACTTTCTCCAATCTTGCAACCCCCTAATACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTTTCTTCCAACTTTCTCCAATCTTGCAACCCCCTAATACTAC  50

seq1  ATAGAAGAACAAAAGCGATAGGGGGGAGAGGCTGTGACATTATCATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAACAAAAGCGATAGGGGGGAGAGGCTGTGACATTATCATTAGA  100

seq1  CTACTTACTGATGATTAGGGACATTGAGTTCCTTGGGGCAAGGTTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACTGATGATTAGGGACATTGAGTTCCTTGGGGCAAGGTTGATCT  150

seq1  TCAACTTCAGAATATCTAATTTCTTCTCTCTTCTTTGTACACAAGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCAGAATATCTAATTTCTTCTCTCTTCTTTGTACACAAGTACCA  200

seq1  TGACCAACAACAACTAACAGCTACCAACCAACAATCCACAACACACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACAACAACTAACAGCTACCAACCAACAATCCACAACACACACTG  250

seq1  CCTTTTGGGGCCCTAGCATTTATATACCTTCTGAAACGTCCCCAGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGGGCCCTAGCATTTATATACCTTCTGAAACGTCCCCAGAATTC  300

seq1  CAAATGTCACACAAATTGCATAAACTATCTGCCCCTGGAAAAATCATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCACACAAATTGCATAAACTATCTGCCCCTGGAAAAATCATGTC  350

seq1  CCTGCTGGAGCATGAGGCAAATCATAGTCAGCTGCTGTGGATAATCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGAGCATGAGGCAAATCATAGTCAGCTGCTGTGGATAATCTGAG  400

seq1  GCAGCCCCCTATATCCCACACCTGGAATTAAAAGGAAAACATCTTCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCCTATATCCCACACCTGGAATTAAAAGGAAAACATCTTCACAA  450

seq1  TACTTCTGCAGCTTTTTTAAAGATACCAAACTCTAAAATTGTCACTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGCAGCTTTTTTAAAGATACCAAACTCTAAAATTGTCACTGCAG  500

seq1  TTCCCCACCTTGGGCGAGCGACCCTTAGTTCCCGTTGGTCAGGAAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCTTGGGCGAGCGACCCTTAGTTCCCGTTGGTCAGGAAAGTAA  550

seq1  AAGTAAAATGAAGGAGAGGAACCTCAACAGAAGCAGACTGCCTTTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATGAAGGAGAGGAACCTCAACAGAAGCAGACTGCCTTTTATTC  600

seq1  AAAAGATGAAGGACGGCAATATCTCAGAGGGAGCCTGTGTATTAAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGAAGGACGGCAATATCTCAGAGGGAGCCTGTGTATTAAGGCCT  650

seq1  TAGGGTGTTATTTTTTTAGGGTGGAAGATTCCATCTGCAGATCAGCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTTATTTTTTTAGGGTGGAAGATTCCATCTGCAGATCAGCTACC  700

seq1  CTCAGCCTCAAAGCTGTAAATACCAATGGAGGTTGGTGTGCTGACCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCAAAGCTGTAAATACCAATGGAGGTTGGTGTGCTGACCTTCT  750

seq1  TGCCTGAAGCTTCCTAGCTCCCCCTGCAGATGTTATCAGCCTGTCAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAGCTTCCTAGCTCCCCCTGCAGATGTTATCAGCCTGTCAGCTT  800

seq1  TTCTGTAGGTAGTTTCTCAGCTACCCTGATGCTTTTAGTTCATGAACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGGTAGTTTCTCAGCTACCCTGATGCTTTTAGTTCATGAACTTT  850

seq1  TCAGGGCCCAGGGGGCCTCGGAATTGAATTAGGGTCCCCAGGTTTTTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCCAGGGGGCCTCGGAATTGAATTAGGGTCCCCAGGTTTTTAGG  900

seq1  GCAAGTATTTTATGAACTGAGCCATCGTTCTAGCCTAAGAATGACTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATTTTATGAACTGAGCCATCGTTCTAGCCTAAGAATGACTCACT  950

seq1  GCAAAAGGCAAGTTAAATCAAATTCTTCTTCTTCTCAAGTTC-TTTTTCT  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCAAAAGGCAAGTTAAATCAAATTCTTCTTCTTCTCAAGTTCTTTTTTCT  1000

seq1  TCTCAACAGGTCACCTTAAACTTTACATAAAAGGCTTTCG-ACACTCTAT  1048
      |||| |||||||||| ||||| |||||||||| ||||||| |||||||||
seq2  TCTC-ACAGGTCACC-TAAAC-TTACATAAAA-GCTTTCGAACACTCTAT  1046

seq1  CAGGTTCTACCTCAATCCCTTCTAACATTATCTC  1082
      |||  |||||||||   |||||||||| ||||||
seq2  CAG--TCTACCTCA--TCCTTCTAACA-TATCTC  1075


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